X-107844752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844752
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 28042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+37C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+37C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+37C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10560
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9161
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-107844753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844753
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844753
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 24398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+38G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+38G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+38G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 603
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-107844758-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844759
    reference: chr 0
allele count: 152
allele frequency: 1.7153820110597e-2
allele num: 8861
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+61dupT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+61dupT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+61dupT
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 458
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 146
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
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  variant carriers: 23
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 190
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 20
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 5
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-107844758-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844760
    reference: chr 0
allele count: 10
allele frequency: 1.128540796749803e-3
allele num: 8861
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+60_2041+61dupTT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+60_2041+61dupTT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+60_1497+61dupTT
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 21067
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
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  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

X-107844758-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844757
    reference: chr 0
allele count: 2249
allele frequency: 2.538088251890306e-1
allele num: 8861
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+61delT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+61delT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+61delT
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21067
  bin: 7.5e0
  variant carriers: 2314
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.25e1
  variant carriers: 632
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 919
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1524
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 1.25e1
  variant carriers: 1354
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 29593
  bin: 2.5e0
  variant carriers: 528
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 2.25e1
  variant carriers: 409
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 4.75e1
  variant carriers: 346
genotype quality: GenotypeQuality
  all individuals: 7252
  bin: 7.5e0
  variant carriers: 908
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.25e1
  variant carriers: 353
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.75e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 569
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 6.75e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 327
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 1.25e1
  variant carriers: 793
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 466
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.25e1
  variant carriers: 269
num of homozygotes: 2
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-107844758-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844756
    reference: chr 0
allele count: 932
allele frequency: 1.051800022570816e-1
allele num: 8861
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2041+60_2041+61delTT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2041+60_2041+61delTT
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1497+60_1497+61delTT
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 879
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
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  variant carriers: 710
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
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genotype depth: GenotypeDepth
  all individuals: 1400
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  variant carriers: 233
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 21067
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
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genotype depth: GenotypeDepth
  all individuals: 108
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genotype depth: GenotypeDepth
  all individuals: 15
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 421
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 365
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genotype quality: GenotypeQuality
  all individuals: 242
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  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 156
genotype quality: GenotypeQuality
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  variant carriers: 206
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 481
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  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 309
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  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 668
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  variant carriers: 198
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: CTT
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-107844758-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844755
    reference: chr 0
allele count: 182
allele frequency: 2.05394425008464e-2
allele num: 8861
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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genotype depth: GenotypeDepth
  all individuals: 9283
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  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 1400
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3814
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20
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genotype depth: GenotypeDepth
  all individuals: 108
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 29593
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  variant carriers: 14
genotype quality: GenotypeQuality
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  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 714
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 382
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genotype quality: GenotypeQuality
  all individuals: 481
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genotype quality: GenotypeQuality
  all individuals: 1034
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genotype quality: GenotypeQuality
  all individuals: 1377
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 581
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 540
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genotype quality: GenotypeQuality
  all individuals: 363
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genotype quality: GenotypeQuality
  all individuals: 421
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genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 309
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genotype quality: GenotypeQuality
  all individuals: 230
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  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 668
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  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 365
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 18
  allele frequency: 4.422604422604422e-2
  allele num: 407
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 35
  allele frequency: 5.952380952380952e-2
  allele num: 588
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 79
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 7
  allele frequency: 4.72972972972973e-2
  allele num: 148
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: CTTT
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

X-107844758-CTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107844758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107844754
    reference: chr 0
allele count: 26
allele frequency: 2.934206071549486e-3
allele num: 8861
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21067
  bin: 7.5e0
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 879
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 108
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genotype depth: GenotypeDepth
  all individuals: 9283
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20
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genotype depth: GenotypeDepth
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  variant carriers: 18
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1400
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genotype depth: GenotypeDepth
  all individuals: 31
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
  all individuals: 309
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genotype quality: GenotypeQuality
  all individuals: 1360
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genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29593
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 540
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 382
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 668
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  variant carriers: 9
genotype quality: GenotypeQuality
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  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2074
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 242
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genotype quality: GenotypeQuality
  all individuals: 714
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  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 481
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.25e1
  variant carriers: 5
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 148
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 6
  allele frequency: 2.073255010366275e-3
  allele num: 2894
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 5
  allele frequency: 1.228501228501228e-2
  allele num: 407
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 1.231527093596059e-3
  allele num: 4060
  num of homozygotes: 0
population: African
population: Latino
population: Other
reference allele: CTTTT
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-107845081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845081
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845081
    reference: chr 0
allele count: 1
allele frequency: 6.690753378830456e-5
allele num: 14946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-34C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-34C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-34C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1324
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 94
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-107845082-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845082
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845082
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14993
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-33G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-33G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-33G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
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site quality: QD

X-107845087-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845087
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845087
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-28C>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-28C>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
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  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-28C>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-107845090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845090
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15265
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-25T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-25T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-25T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
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site quality: InbreedingCoeff
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X-107845094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845094
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15393
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-21A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-21A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-21A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7535
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107845110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845110
    reference: chr 0
allele count: 1
allele frequency: 6.108362348054486e-5
allele num: 16371
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2042-5C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1498-5C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2042-5C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 87
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3773
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genotype quality: GenotypeQuality
  all individuals: 1155
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genotype quality: GenotypeQuality
  all individuals: 491
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  variant carriers: 0
hgvs: c.2042-5C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-107845125-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845125
    reference: chr 0
allele count: 1
allele frequency: 5.591590248266607e-5
allele num: 17884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2052A>G
  hgvsp: ENST00000361603.2:c.2052A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2052A>G
  hgvsp: ENST00000328300.6:c.2052A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1508A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 2170
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 556
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1178
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly684Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

X-107845128-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845128
    reference: chr 0
allele count: 1905
allele frequency: 9.781771501925546e-2
allele num: 19475
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2055T>C
  hgvsp: ENST00000328300.6:c.2055T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2055T>C
  hgvsp: ENST00000361603.2:c.2055T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1511T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18225
  bin: 7.5e0
  variant carriers: 1168
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 85
genotype depth: GenotypeDepth
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  variant carriers: 445
genotype depth: GenotypeDepth
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  variant carriers: 80
genotype depth: GenotypeDepth
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  variant carriers: 265
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 425
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  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 98
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genotype quality: GenotypeQuality
  all individuals: 1151
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  variant carriers: 48
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 56
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 202
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 421
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genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 505
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  variant carriers: 41
hgvs: p.Leu685Leu
num of homozygotes: 231
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

X-107845146-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845146
    reference: chr 0
allele count: 18
allele frequency: 1.191895113230036e-3
allele num: 15102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1529G>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2073G>T
  hgvsp: ENSP00000354505.2:p.Leu691Phe
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2073G>T
  hgvsp: ENSP00000331902.6:p.Leu691Phe
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 245
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genotype depth: GenotypeDepth
  all individuals: 508
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 9192
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Leu691Phe
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-107845155-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845155
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845155
    reference: chr 0
allele count: 1
allele frequency: 5.689576695493855e-5
allele num: 17576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2082A>T
  hgvsp: ENST00000361603.2:c.2082A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1538A>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2082A>T
  hgvsp: ENST00000328300.6:c.2082A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25873
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile694Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

X-107845177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845177
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845177
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18539
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2104G>A
  hgvsp: ENSP00000331902.6:p.Gly702Ser
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1560G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2104G>A
  hgvsp: ENSP00000354505.2:p.Gly702Ser
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly702Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-107845182-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845182
    reference: chr 0
allele count: 1
allele frequency: 5.315755900489049e-5
allele num: 18812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2109C>A
  hgvsp: ENST00000361603.2:c.2109C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1565C>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2109C>A
  hgvsp: ENST00000328300.6:c.2109C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24193
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
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  variant carriers: 1
hgvs: p.Ile703Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-107845252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845252
    reference: chr 0
allele count: 1
allele frequency: 6.228589224540641e-5
allele num: 16055
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1602+33T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2146+33T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2146+33T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1023
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

X-107845254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845254
    reference: chr 0
allele count: 1
allele frequency: 6.256647688168679e-5
allele num: 15983
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1602+35G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2146+35G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2146+35G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 404
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

X-107845257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107845257
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107845257
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2146+38G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1602+38G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2146+38G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 378
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-107846143-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846142
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16237
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-50delC
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-50delC
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-50delC
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 204
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: TC
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-107846149-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846149
    reference: chr 0
allele count: 1
allele frequency: 6.154224875376947e-5
allele num: 16249
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-45A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-45A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-45A>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 488
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-107846153-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846153
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846153
    reference: chr 0
allele count: 1
allele frequency: 6.121824303642486e-5
allele num: 16335
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-41C>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
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  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-41C>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
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X-107846154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846154
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16373
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-40C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-40C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-40C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
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site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
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site quality: InbreedingCoeff

X-107846155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846155
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846155
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16409
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-39T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-39T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-39T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-107846166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846166
    reference: chr 0
allele count: 1
allele frequency: 5.928385107896609e-5
allele num: 16868
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-28G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-28G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-28G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-107846167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846167
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846167
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16949
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-27G>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-27G>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-27G>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30275
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11745
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

X-107846182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846182
    reference: chr 0
allele count: 26
allele frequency: 1.42935678944475e-3
allele num: 18190
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2147-12A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1603-12A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2147-12A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-107846213-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846213
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 24646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2166A>G
  hgvsp: ENST00000361603.2:c.2166A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2166A>G
  hgvsp: ENST00000328300.6:c.2166A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1622A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly722Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS

X-107846219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846219
    reference: chr 0
allele count: 1
allele frequency: 3.808943399101089e-5
allele num: 26254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2172A>G
  hgvsp: ENST00000328300.6:c.2172A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1628A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2172A>G
  hgvsp: ENST00000361603.2:c.2172A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1160
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  variant carriers: 0
hgvs: p.Pro724Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-107846243-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846243
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846243
    reference: chr 0
allele count: 1
allele frequency: 3.337560910486617e-5
allele num: 29962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2196A>T
  hgvsp: ENSP00000354505.2:p.Arg732Ser
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1652A>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2196A>T
  hgvsp: ENSP00000331902.6:p.Arg732Ser
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg732Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-107846262-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846262
    reference: chr 0
allele count: 81
allele frequency: 2.801798685575925e-3
allele num: 28910
alternate allele: G
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2215C>G
  hgvsp: ENSP00000331902.6:p.Pro739Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2215C>G
  hgvsp: ENSP00000354505.2:p.Pro739Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1671C>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 17
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5552
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 200
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Pro739Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-107846263-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846263
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846263
    reference: chr 0
allele count: 3
allele frequency: 1.035661269720717e-4
allele num: 28967
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2216C>A
  hgvsp: ENSP00000331902.6:p.Pro739His
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1672C>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2216C>A
  hgvsp: ENSP00000354505.2:p.Pro739His
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
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  variant carriers: 0
hgvs: p.Pro739His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-107846271-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846271
    reference: chr 0
allele count: 1
allele frequency: 3.53356890459364e-5
allele num: 28300
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2224C>A
  hgvsp: ENSP00000331902.6:p.Pro742Thr
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1680C>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2224C>A
  hgvsp: ENSP00000354505.2:p.Pro742Thr
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro742Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-107846274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846274
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846274
    reference: chr 0
allele count: 1
allele frequency: 3.592083048960092e-5
allele num: 27839
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2227G>A
  hgvsp: ENSP00000354505.2:p.Gly743Ser
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2227G>A
  hgvsp: ENSP00000331902.6:p.Gly743Ser
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1683G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly743Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-107846280-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846280
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846280
    reference: chr 0
allele count: 1
allele frequency: 3.667705849990831e-5
allele num: 27265
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2233C>G
  hgvsp: ENSP00000331902.6:p.Pro745Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2233C>G
  hgvsp: ENSP00000354505.2:p.Pro745Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1689C>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro745Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-107846297-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846297
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846297
    reference: chr 0
allele count: 2
allele frequency: 8.568613169958442e-5
allele num: 23341
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+6G>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+6G>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+6G>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.2244+6G>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

X-107846300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846300
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846300
    reference: chr 0
allele count: 2
allele frequency: 8.858965272856131e-5
allele num: 22576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+9C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+9C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+9C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
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site quality: DP
site quality: FS
site quality: InbreedingCoeff
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site quality: BaseQRankSum

X-107846319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846319
    reference: chr 0
allele count: 1
allele frequency: 5.868889019308645e-5
allele num: 17039
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+28T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+28T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+28T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
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genotype depth: GenotypeDepth
  all individuals: 46
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

X-107846321-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846321
    reference: chr 0
allele count: 31
allele frequency: 1.873564607760184e-3
allele num: 16546
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+30A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+30A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+30A>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 829
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-107846321-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846321
    reference: chr 0
allele count: 1
allele frequency: 6.043756799226399e-5
allele num: 16546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+30A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+30A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+30A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-107846326-C-CACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846326
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846329
    reference: chr 0
allele count: 1
allele frequency: 6.56254101588135e-5
allele num: 15238
alternate allele: CACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+35_2244+36insACA
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+35_2244+36insACA
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+35_1700+36insACA
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-107846327-T-TAGAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107846327
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107846332
    reference: chr 0
allele count: 1
allele frequency: 6.56254101588135e-5
allele num: 15238
alternate allele: TAGAGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1700+36_1700+37insAGAGC
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2244+36_2244+37insAGAGC
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2244+36_2244+37insAGAGC
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-107849923-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107849923
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107849923
    reference: chr 0
allele count: 1
allele frequency: 1.142530705512711e-5
allele num: 87525
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1701-49A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2245-49A>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2245-49A>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22685
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-107849949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107849949
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107849949
    reference: chr 0
allele count: 6
allele frequency: 6.847126489250011e-5
allele num: 87628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2245-23G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2245-23G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1701-23G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22686
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6491
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-107849963-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107849963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107849963
    reference: chr 0
allele count: 1
allele frequency: 1.140510948905109e-5
allele num: 87680
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2245-9A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1701-9A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2245-9A>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22687
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2429
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2806
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-107849977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107849977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107849977
    reference: chr 0
allele count: 1
allele frequency: 1.140237853616264e-5
allele num: 87701
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1706A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2250A>G
  hgvsp: ENST00000361603.2:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2250A>G
  hgvsp: ENST00000328300.6:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19140
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22685
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu750Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-107849982-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107849982
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107849982
    reference: chr 0
allele count: 1
allele frequency: 1.140172850204091e-5
allele num: 87706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2255G>T
  hgvsp: ENSP00000354505.2:p.Gly752Val
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2255G>T
  hgvsp: ENSP00000331902.6:p.Gly752Val
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1711G>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 6513
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly752Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-107850013-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850013
    reference: chr 0
allele count: 1
allele frequency: 1.140016872249709e-5
allele num: 87718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1742A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2286A>G
  hgvsp: ENST00000328300.6:c.2286A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2286A>G
  hgvsp: ENST00000361603.2:c.2286A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3335
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genotype quality: GenotypeQuality
  all individuals: 15
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  variant carriers: 0
hgvs: p.Pro762Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

X-107850022-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850022
    reference: chr 0
allele count: 1
allele frequency: 1.139977884429042e-5
allele num: 87721
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1751A>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2295A>G
  hgvsp: ENST00000328300.6:c.2295A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2295A>G
  hgvsp: ENST00000361603.2:c.2295A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2240
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genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
hgvs: p.Pro765Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

X-107850025-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850025
    reference: chr 0
allele count: 1
allele frequency: 1.139964889081416e-5
allele num: 87722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1754T>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2298T>A
  hgvsp: ENST00000361603.2:c.2298T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2298T>A
  hgvsp: ENST00000328300.6:c.2298T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19200
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly766Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-107850026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850026
    reference: chr 0
allele count: 2
allele frequency: 2.279929778162832e-5
allele num: 87722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2299T>C
  hgvsp: ENSP00000354505.2:p.Phe767Leu
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2299T>C
  hgvsp: ENSP00000331902.6:p.Phe767Leu
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1755T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 22684
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19207
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe767Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-107850036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850036
    reference: chr 0
allele count: 1
allele frequency: 1.139951894030072e-5
allele num: 87723
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2309C>G
  hgvsp: ENSP00000354505.2:p.Ala770Gly
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1765C>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2309C>G
  hgvsp: ENSP00000331902.6:p.Ala770Gly
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 13016
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala770Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

X-107850038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850038
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850038
    reference: chr 0
allele count: 1
allele frequency: 1.139938899274999e-5
allele num: 87724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2311C>T
  hgvsp: ENSP00000354505.2:p.Leu771Phe
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2311C>T
  hgvsp: ENSP00000331902.6:p.Leu771Phe
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1767C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2990
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
hgvs: p.Leu771Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-107850044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850044
    reference: chr 0
allele count: 1
allele frequency: 1.139964889081416e-5
allele num: 87722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1773C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2317C>T
  hgvsp: ENSP00000354505.2:p.Pro773Ser
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2317C>T
  hgvsp: ENSP00000331902.6:p.Pro773Ser
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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  variant carriers: 0
hgvs: p.Pro773Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-107850056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850056
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850056
    reference: chr 0
allele count: 1
allele frequency: 1.140029868782562e-5
allele num: 87717
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2329C>T
  hgvsp: ENSP00000354505.2:p.Arg777Cys
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1785C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2329C>T
  hgvsp: ENSP00000331902.6:p.Arg777Cys
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg777Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-107850057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850057
    reference: chr 0
allele count: 2
allele frequency: 2.280137720318307e-5
allele num: 87714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1786G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2330G>A
  hgvsp: ENSP00000331902.6:p.Arg777His
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2330G>A
  hgvsp: ENSP00000354505.2:p.Arg777His
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg777His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP

X-107850065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850065
    reference: chr 0
allele count: 6
allele frequency: 6.840257193670482e-5
allele num: 87716
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2338C>G
  hgvsp: ENSP00000331902.6:p.Pro780Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1794C>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2338C>G
  hgvsp: ENSP00000354505.2:p.Pro780Ala
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5726
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro780Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-107850066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850066
    reference: chr 0
allele count: 1
allele frequency: 1.140042865611747e-5
allele num: 87716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1795C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2339C>T
  hgvsp: ENSP00000354505.2:p.Pro780Leu
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2339C>T
  hgvsp: ENSP00000331902.6:p.Pro780Leu
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4306
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro780Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-107850075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850075
    reference: chr 0
allele count: 7
allele frequency: 7.981300952055184e-5
allele num: 87705
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1804C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2348C>T
  hgvsp: ENSP00000331902.6:p.Pro783Leu
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2348C>T
  hgvsp: ENSP00000354505.2:p.Pro783Leu
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro783Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-107850076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850076
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850076
    reference: chr 0
allele count: 4519
allele frequency: 5.153910197192094e-2
allele num: 87681
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1805G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2349G>A
  hgvsp: ENST00000328300.6:c.2349G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2349G>A
  hgvsp: ENST00000361603.2:c.2349G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
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  variant carriers: 123
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 107
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 107
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6370
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  variant carriers: 4
hgvs: p.Pro783Pro
num of homozygotes: 428
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-107850087-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850087
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850087
    reference: chr 0
allele count: 1
allele frequency: 1.140406897180914e-5
allele num: 87688
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2360G>C
  hgvsp: ENSP00000354505.2:p.Gly787Ala
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1816G>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2360G>C
  hgvsp: ENSP00000331902.6:p.Gly787Ala
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
hgvs: p.Gly787Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

X-107850089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850089
    reference: chr 0
allele count: 5
allele frequency: 5.702684824015146e-5
allele num: 87678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1818C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2362C>T
  hgvsp: ENSP00000354505.2:p.Arg788Cys
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2362C>T
  hgvsp: ENSP00000331902.6:p.Arg788Cys
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2886
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genotype quality: GenotypeQuality
  all individuals: 21200
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg788Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-107850090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850090
    reference: chr 0
allele count: 7
allele frequency: 7.984214068185188e-5
allele num: 87673
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2363G>A
  hgvsp: ENSP00000331902.6:p.Arg788His
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1819G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2363G>A
  hgvsp: ENSP00000354505.2:p.Arg788His
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2508
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg788His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-107850126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850126
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850126
    reference: chr 0
allele count: 3
allele frequency: 3.430296377607025e-5
allele num: 87456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+4T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+4T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+4T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.2395+4T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

X-107850130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850130
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850130
    reference: chr 0
allele count: 1
allele frequency: 1.144151668745209e-5
allele num: 87401
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+8G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+8G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+8G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.2395+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-107850138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850138
    reference: chr 0
allele count: 1
allele frequency: 1.146526026140793e-5
allele num: 87220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+16C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+16C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+16C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-107850144-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850144
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850144
    reference: chr 0
allele count: 1
allele frequency: 1.149597066228287e-5
allele num: 86987
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+22C>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+22C>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+22C>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6384
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS

X-107850160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850160
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850160
    reference: chr 0
allele count: 3
allele frequency: 3.477132061475695e-5
allele num: 86278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+38C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+38C>T
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+38C>T
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-107850164-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850164
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850164
    reference: chr 0
allele count: 1
allele frequency: 1.161278335191379e-5
allele num: 86112
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+42T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+42T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+42T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

X-107850172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107850172
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107850172
    reference: chr 0
allele count: 1
allele frequency: 1.170987610951076e-5
allele num: 85398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2395+50T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1851+50T>C
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2395+50T>C
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

X-107858092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107858092
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107858092
    reference: chr 0
allele count: 4
allele frequency: 5.701579337476481e-5
allele num: 70156
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2396-49G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1852-49G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2396-49G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-107858097-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107858097
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107858097
    reference: chr 0
allele count: 27
allele frequency: 3.831037075925479e-4
allele num: 70477
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2396-44T>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2396-44T>G
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1852-44T>G
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14233
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13187
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

X-107858101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107858101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107858101
    reference: chr 0
allele count: 1
allele frequency: 1.413327680022613e-5
allele num: 70755
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl transcript: ENST00000483338
  gene symbol: COL4A5
  hgvsc: ENST00000483338.1:n.1852-40G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000331902
  ensembl transcript: ENST00000328300
  gene symbol: COL4A5
  hgvsc: ENST00000328300.6:c.2396-40G>A
  variant of: http://identifiers.org/hgnc/2207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188153
  ensembl protein: ENSP00000354505
  ensembl transcript: ENST00000361603
  gene symbol: COL4A5
  hgvsc: ENST00000361603.2:c.2396-40G>A
  variant of: http://identifiers.org/hgnc/2207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13035
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 775
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5389
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 251
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

DP
type: SiteQuality
SIO_000300: 7.7882e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 2.203e1

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5199
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.629e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.43e-2

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.967e1

DP
type: SiteQuality
SIO_000300: 7.64402e5

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 4

South Asian
type: Population
allele count: 47
allele frequency: 1.624049758120249e-2
allele num: 2894
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.401360544217687e-3
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 3.795620437956204e-2
allele num: 685
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 60
allele frequency: 1.477832512315271e-2
allele num: 4060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 2.027027027027027e-2
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 3.194103194103194e-2
allele num: 407
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.265822784810127e-2
allele num: 79
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 5.30482e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 1.0361e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

MQ
type: SiteQuality
SIO_000300: 5.67e1

GenotypeQuality
all individuals: 363
bin: 7.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 79
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.852216748768472e-4
allele num: 4060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 407
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.700680272108843e-3
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.2992700729927e-3
allele num: 685
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 1.0361e1

DP
type: SiteQuality
SIO_000300: 5.30482e5

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.67e1

GenotypeQuality
all individuals: 1377
bin: 9.75e1
variant carriers: 657

East Asian
type: Population
allele count: 83
allele frequency: 2.039312039312039e-1
allele num: 407
num of homozygotes: 0

African
type: Population
allele count: 183
allele frequency: 2.671532846715328e-1
allele num: 685
num of homozygotes: 0

Latino
type: Population
allele count: 98
allele frequency: 1.666666666666667e-1
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 681
allele frequency: 2.353144436765722e-1
allele num: 2894
num of homozygotes: 1

Other
type: Population
allele count: 19
allele frequency: 2.405063291139241e-1
allele num: 79
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 1.891891891891892e-1
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1157
allele frequency: 2.849753694581281e-1
allele num: 4060
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.67e1

FS
type: SiteQuality
SIO_000300: 1.0361e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 5.30482e5

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 151

South Asian
type: Population
allele count: 214
allele frequency: 7.394609536973047e-2
allele num: 2894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 25
allele frequency: 1.689189189189189e-1
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 1.474201474201474e-1
allele num: 407
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.392405063291139e-1
allele num: 79
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 445
allele frequency: 1.096059113300493e-1
allele num: 4060
num of homozygotes: 0

Latino
type: Population
allele count: 114
allele frequency: 1.938775510204082e-1
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 63
allele frequency: 9.197080291970802e-2
allele num: 685
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.74e0

DP
type: SiteQuality
SIO_000300: 5.30482e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.67e1

FS
type: SiteQuality
SIO_000300: 1.0361e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

European (Non-Finnish)
type: Population
allele count: 70
allele frequency: 1.724137931034483e-2
allele num: 4060
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 1.347615756738079e-2
allele num: 2894
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.897810218978102e-2
allele num: 685
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.30482e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 1.0361e1

MQ
type: SiteQuality
SIO_000300: 5.67e1

QD
type: SiteQuality
SIO_000300: 4.74e0

African
type: Population
allele count: 2
allele frequency: 2.91970802919708e-3
allele num: 685
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.360544217687075e-2
allele num: 588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 79
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.74e0

MQ
type: SiteQuality
SIO_000300: 5.67e1

FS
type: SiteQuality
SIO_000300: 1.0361e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 5.30482e5

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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allele num: 1969
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South Asian
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Latino
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Other
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 335
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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VQSLOD
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MQRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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DP
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MQRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.25203455615375e-4
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num of homozygotes: 0

East Asian
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African
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South Asian
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 5.76154e5

QD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 214
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.144033863402357e-4
allele num: 8741
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 513
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Other
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allele frequency: 0.0e0
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African
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QD
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InbreedingCoeff
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FS
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.701517015170152e-2
allele num: 4878
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Latino
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allele frequency: 1.459293394777266e-1
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African
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allele frequency: 4.039125431530495e-1
allele num: 3476
num of homozygotes: 216

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 29
allele frequency: 3.275725742686095e-3
allele num: 8853
num of homozygotes: 0

Other
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allele frequency: 8.235294117647059e-2
allele num: 170
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East Asian
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allele frequency: 2.31404958677686e-1
allele num: 1210
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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FS
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

Other
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African
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allele frequency: 3.932584269662922e-3
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South Asian
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European (Non-Finnish)
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allele frequency: 9.853603603603603e-4
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European (Finnish)
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East Asian
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allele frequency: 3.88098318240621e-3
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Latino
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allele frequency: 0.0e0
allele num: 404
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MQ
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FS
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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Latino
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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FS
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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East Asian
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DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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VQSLOD
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DP
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MQ
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QD
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.294833613880616e-4
allele num: 7723
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 4.516711833785004e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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MQ
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 195
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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ReadPosRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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DP
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FS
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.260716086737267e-4
allele num: 7932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 4857
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQ
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InbreedingCoeff
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FS
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QD
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DP
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8597
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
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allele frequency: 5.285627159991868e-3
allele num: 4919
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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MQRankSum
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

MQ
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VQSLOD
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InbreedingCoeff
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QD
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DP
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FS
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 1943
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.844337882700111e-4
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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FS
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 3.198653198653199e-2
allele num: 2376
num of homozygotes: 0

Other
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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FS
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 9.923916639100231e-4
allele num: 3023
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
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QD
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.684623069238454e-5
allele num: 13013
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 3656
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 3.55366027007818e-4
allele num: 2814
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 12522
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 3.679175864606328e-4
allele num: 2718
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
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FS
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MQ
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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SIO_000300: 6.50508e5

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 3.82189948404357e-4
allele num: 5233
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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FS
type: SiteQuality
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DP
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 6.67334000667334e-4
allele num: 2997
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 470
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 180
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South Asian
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allele frequency: 0.0e0
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Latino
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
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MQ
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7647
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 144
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European (Finnish)
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allele count: 1
allele frequency: 4.23728813559322e-3
allele num: 236
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 913
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.74825e5

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

Latino
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allele frequency: 1.194743130227001e-3
allele num: 837
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 142
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7413
num of homozygotes: 0

South Asian
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allele count: 0
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African
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allele count: 30
allele frequency: 1.378043178686266e-2
allele num: 2177
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East Asian
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allele frequency: 0.0e0
allele num: 890
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.63e-2

FS
type: SiteQuality
SIO_000300: 4.821e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 4.593477262287552e-4
allele num: 2177
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 837
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 890
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7413
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 212
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South Asian
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.63e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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FS
type: SiteQuality
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DP
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SIO_000300: 4.67142e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 580
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.463486023708474e-4
allele num: 6833
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
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MQRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.462843768285547e-4
allele num: 6836
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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Latino
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Other
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQ
type: SiteQuality
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VQSLOD
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FS
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 1.582278481012658e-3
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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Latino
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allele frequency: 4.29553264604811e-4
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East Asian
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South Asian
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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African
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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Other
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FS
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 633
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47966
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-1

MQ
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SIO_000300: 5.967e1

ClippingRankSum
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.084288632289799e-5
allele num: 47978
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.19e-1

DP
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SIO_000300: 2.553561e6

ClippingRankSum
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MQ
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.08415831266543e-5
allele num: 47981
num of homozygotes: 0

South Asian
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num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.878e1

FS
type: SiteQuality
SIO_000300: 5.836e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.553487e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

South Asian
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allele frequency: 1.976284584980237e-4
allele num: 10120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47979
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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African
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num of homozygotes: 0

FS
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.08415831266543e-5
allele num: 47981
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.59e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.553519e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.682e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 9.880446596186147e-5
allele num: 10121
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.284000000000001e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.084114876411988e-5
allele num: 47982
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.173e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.08420175072947e-5
allele num: 47980
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
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allele count: 0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.553292e6

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.084288632289799e-5
allele num: 47978
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 1.07342206955775e-4
allele num: 9316
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.552e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.240000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 6.4e-1

DP
type: SiteQuality
SIO_000300: 2.553427e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 9.055236945366737e-4
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47979
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
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allele count: 0
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African
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allele num: 8511
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47979
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
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East Asian
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allele frequency: 1.509433962264151e-4
allele num: 6625
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.062e0

VQSLOD
type: SiteQuality
SIO_000300: -9.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.602e1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.306e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19187
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073537305421363e-4
allele num: 9315
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.250781738586617e-4
allele num: 47970
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 2.553359e6

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 174
allele frequency: 1.719707452065626e-2
allele num: 10118
num of homozygotes: 0

African
type: Population
allele count: 2894
allele frequency: 3.401104712657186e-1
allele num: 8509
num of homozygotes: 373

Other
type: Population
allele count: 19
allele frequency: 3.001579778830964e-2
allele num: 633
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Latino
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allele count: 427
allele frequency: 4.585481099656357e-2
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num of homozygotes: 10

East Asian
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allele count: 961
allele frequency: 1.453418027828191e-1
allele num: 6612
num of homozygotes: 44

European (Non-Finnish)
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allele count: 44
allele frequency: 9.17297308566306e-4
allele num: 47967
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.015e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

DP
type: SiteQuality
SIO_000300: 2.841654e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.085288291106245e-5
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European (Finnish)
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.042752867570386e-4
allele num: 47950
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 7.514761137949544e-4
allele num: 9315
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47811
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East Asian
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allele frequency: 4.531722054380665e-4
allele num: 6620
num of homozygotes: 0

FS
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ClippingRankSum
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.093188763762716e-5
allele num: 47774
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.195886151638364e-4
allele num: 8362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47673
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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MQRankSum
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DP
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4527
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African
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allele count: 1
allele frequency: 1.20875135984528e-4
allele num: 8273
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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FS
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
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allele frequency: 3.232410300614158e-4
allele num: 9281
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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allele num: 4521
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African
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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QD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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num of homozygotes: 0

South Asian
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Other
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.142015636714148e-5
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQ
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DP
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GenotypeQuality
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variant carriers: 3

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 2.642007926023778e-5
allele num: 37850
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Other
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Latino
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African
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allele frequency: 4.109589041095891e-4
allele num: 7300
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South Asian
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeQuality
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bin: 4.25e1
variant carriers: 1

South Asian
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num of homozygotes: 0

Latino
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African
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allele frequency: 3.688020762190958e-3
allele num: 7321
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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