X-153927749-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927749
    reference: chr 0
allele count: 1
allele frequency: 1.149042273265233e-5
allele num: 87029
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1165A>C
  hgvsp: ENSP00000358581.4:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.712A>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1165A>C
  hgvsp: ENSP00000399588.2:p.Ser389Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1162A>C
  hgvsp: ENSP00000358588.3:p.Ser388Arg
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2183
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser389Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-153927772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927772
    reference: chr 0
allele count: 1
allele frequency: 1.183894301916725e-5
allele num: 84467
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1142C>T
  hgvsp: ENSP00000399588.2:p.Pro381Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1139C>T
  hgvsp: ENSP00000358588.3:p.Pro380Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1142C>T
  hgvsp: ENSP00000358581.4:p.Pro381Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.689C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro381Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-153927781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927781
    reference: chr 0
allele count: 4
allele frequency: 4.946271129851983e-5
allele num: 80869
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1130G>A
  hgvsp: ENSP00000358588.3:p.Arg377Lys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1133G>A
  hgvsp: ENSP00000399588.2:p.Arg378Lys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1133G>A
  hgvsp: ENSP00000358581.4:p.Arg378Lys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.680G>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg378Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-153927782-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927782
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927782
    reference: chr 0
allele count: 1
allele frequency: 1.236567782462996e-5
allele num: 80869
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.679A>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1129A>T
  hgvsp: ENSP00000358588.3:p.Arg377Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1132A>T
  hgvsp: ENSP00000399588.2:p.Arg378Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1132A>T
  hgvsp: ENSP00000358581.4:p.Arg378Trp
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg378Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-153927808-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927808
    reference: chr 0
allele count: 1
allele frequency: 1.347055337033245e-5
allele num: 74236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1123-20C>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1126-20C>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1126-20C>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.673-20C>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

X-153927820-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927820
    reference: chr 0
allele count: 1
allele frequency: 1.409324088167315e-5
allele num: 70956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1126-32G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1126-32G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1123-32G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.673-32G>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 390
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genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

X-153927835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927835
    reference: chr 0
allele count: 1
allele frequency: 1.491624528273743e-5
allele num: 67041
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1126-47T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.673-47T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1123-47T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1126-47T>C
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15649
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-153927836-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927836
    reference: chr 0
allele count: 1
allele frequency: 1.493384307517697e-5
allele num: 66962
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1126-48T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.673-48T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1126-48T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1123-48T>C
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-153927836-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153927836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153927835
    reference: chr 0
allele count: 2
allele frequency: 2.986768615035393e-5
allele num: 66962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.673-49delG
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1123-49delG
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1126-49delG
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1126-49delG
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: AC
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

X-153928245-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928245
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928245
    reference: chr 0
allele count: 3
allele frequency: 3.437922577983544e-5
allele num: 87262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.672+34A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1122+34A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1125+34A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1125+34A>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

X-153928251-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928251
    reference: chr 0
allele count: 30
allele frequency: 3.436859168967453e-4
allele num: 87289
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.672+28G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1122+28G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1125+28G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1125+28G>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-153928260-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928260
    reference: chr 0
allele count: 7
allele frequency: 8.006679858624911e-5
allele num: 87427
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1125+19T>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1122+19T>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.672+19T>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1125+19T>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-153928285-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928285
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928285
    reference: chr 0
allele count: 2
allele frequency: 2.281802624073018e-5
allele num: 87650
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1119G>T
  hgvsp: ENSP00000399588.2:p.Leu373Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1119G>T
  hgvsp: ENSP00000358581.4:p.Leu373Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.666G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1116G>T
  hgvsp: ENSP00000358588.3:p.Leu372Phe
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3352
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu373Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

X-153928290-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928290
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928290
    reference: chr 0
allele count: 1
allele frequency: 1.140706097074089e-5
allele num: 87665
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1111A>T
  hgvsp: ENSP00000358588.3:p.Ser371Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1114A>T
  hgvsp: ENSP00000399588.2:p.Ser372Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1114A>T
  hgvsp: ENSP00000358581.4:p.Ser372Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.661A>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 483
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser372Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-153928300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928300
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928300
    reference: chr 0
allele count: 3
allele frequency: 3.422040220379391e-5
allele num: 87667
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1104C>G
  hgvsp: ENSP00000399588.2:p.Asp368Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1101C>G
  hgvsp: ENSP00000358588.3:p.Asp367Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.651C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1104C>G
  hgvsp: ENSP00000358581.4:p.Asp368Glu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3494
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
hgvs: p.Asp368Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-153928313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928313
    reference: chr 0
allele count: 7
allele frequency: 7.984760514218577e-5
allele num: 87667
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.638T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1088T>C
  hgvsp: ENSP00000358588.3:p.Leu363Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1091T>C
  hgvsp: ENSP00000399588.2:p.Leu364Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1091T>C
  hgvsp: ENSP00000358581.4:p.Leu364Ser
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
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genotype depth: GenotypeDepth
  all individuals: 3039
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1001
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 705
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
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genotype quality: GenotypeQuality
  all individuals: 2944
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  variant carriers: 0
hgvs: p.Leu364Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

X-153928332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928332
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928332
    reference: chr 0
allele count: 1
allele frequency: 1.14105753212077e-5
allele num: 87638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1069G>A
  hgvsp: ENSP00000358588.3:p.Asp357Asn
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.619G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1072G>A
  hgvsp: ENSP00000358581.4:p.Asp358Asn
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1072G>A
  hgvsp: ENSP00000399588.2:p.Asp358Asn
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp358Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-153928359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928359
    reference: chr 0
allele count: 3
allele frequency: 3.429982621421385e-5
allele num: 87464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1067-25C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1070-25C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.617-25C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1070-25C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153928361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928361
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928361
    reference: chr 0
allele count: 1
allele frequency: 1.143484425742121e-5
allele num: 87452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1070-27C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1067-27C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1070-27C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.617-27C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1000
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26300
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-153928369-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928369
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928369
    reference: chr 0
allele count: 2
allele frequency: 2.288015375463323e-5
allele num: 87412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1070-35C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.617-35C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1070-35C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1067-35C>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1359
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153928371-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928371
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928371
    reference: chr 0
allele count: 1
allele frequency: 1.144086218337414e-5
allele num: 87406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1070-37T>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1070-37T>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.617-37T>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1067-37T>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
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site quality: MQ

X-153928377-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153928377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153928377
    reference: chr 0
allele count: 1
allele frequency: 1.145134324256235e-5
allele num: 87326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1067-43A>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1070-43A>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1070-43A>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000160219
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  gene symbol: GAB3
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  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS

X-153940463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940463
    reference: chr 0
allele count: 4
allele frequency: 5.183092751444787e-5
allele num: 77174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1066+41G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+1019G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
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  gene symbol: GAB3
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  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
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X-153940464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940464
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940464
    reference: chr 0
allele count: 1
allele frequency: 1.294531897265949e-5
allele num: 77248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+1018C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1069+40C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1066+40C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1069+40C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
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site quality: VQSLOD
site quality: FS
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site quality: MQ
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X-153940476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940476
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940476
    reference: chr 0
allele count: 1
allele frequency: 1.281509105122192e-5
allele num: 78033
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+1006G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1066+28G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
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  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1069+28G>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-153940477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940477
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940477
    reference: chr 0
allele count: 7
allele frequency: 8.947630795188731e-5
allele num: 78233
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+1005C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1069+27C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1069+27C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1066+27C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5433
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-153940482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940482
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940482
    reference: chr 0
allele count: 1
allele frequency: 1.267893141965995e-5
allele num: 78871
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+1000T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1069+22T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1066+22T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1069+22T>C
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 518
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-153940521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940521
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940521
    reference: chr 0
allele count: 1
allele frequency: 1.220747830120732e-5
allele num: 81917
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1049A>G
  hgvsp: ENSP00000358588.3:p.Asn350Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1052A>G
  hgvsp: ENSP00000399588.2:p.Asn351Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+961A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1052A>G
  hgvsp: ENSP00000358581.4:p.Asn351Ser
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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  variant carriers: 0
hgvs: p.Asn351Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-153940535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940535
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940535
    reference: chr 0
allele count: 2
allele frequency: 2.403672812056823e-5
allele num: 83206
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1038C>G
  hgvsp: ENST00000424127.2:c.1038C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+947C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1038C>G
  hgvsp: ENST00000369568.4:c.1038C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1035C>G
  hgvsp: ENST00000369575.3:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu346Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-153940547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940547
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940547
    reference: chr 0
allele count: 1
allele frequency: 1.187169076619892e-5
allele num: 84234
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1026A>G
  hgvsp: ENST00000424127.2:c.1026A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1026A>G
  hgvsp: ENST00000369568.4:c.1026A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1023A>G
  hgvsp: ENST00000369575.3:c.1023A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+935A>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5912
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  variant carriers: 0
hgvs: p.Arg342Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-153940551-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940551
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940551
    reference: chr 0
allele count: 1
allele frequency: 1.182438424519043e-5
allele num: 84571
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1022C>A
  hgvsp: ENSP00000358581.4:p.Pro341Gln
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1022C>A
  hgvsp: ENSP00000399588.2:p.Pro341Gln
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1019C>A
  hgvsp: ENSP00000358588.3:p.Pro340Gln
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+931C>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1926
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hgvs: p.Pro341Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-153940563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940563
    reference: chr 0
allele count: 3
allele frequency: 3.49862387460932e-5
allele num: 85748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+919G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1007G>A
  hgvsp: ENSP00000358588.3:p.Cys336Tyr
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1010G>A
  hgvsp: ENSP00000358581.4:p.Cys337Tyr
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1010G>A
  hgvsp: ENSP00000399588.2:p.Cys337Tyr
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 1122
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hgvs: p.Cys337Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-153940568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940568
    reference: chr 0
allele count: 1
allele frequency: 1.159810255042275e-5
allele num: 86221
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+914A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.1005A>G
  hgvsp: ENST00000424127.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.1005A>G
  hgvsp: ENST00000369568.4:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.1002A>G
  hgvsp: ENST00000369575.3:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19798
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro335Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-153940587-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940587
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940587
    reference: chr 0
allele count: 1
allele frequency: 1.146894210478026e-5
allele num: 87192
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.986A>C
  hgvsp: ENSP00000399588.2:p.His329Pro
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+895A>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.986A>C
  hgvsp: ENSP00000358581.4:p.His329Pro
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.983A>C
  hgvsp: ENSP00000358588.3:p.His328Pro
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His329Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-153940597-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940597
    reference: chr 0
allele count: 1
allele frequency: 1.144714851530484e-5
allele num: 87358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.973T>A
  hgvsp: ENSP00000358588.3:p.Trp325Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.976T>A
  hgvsp: ENSP00000399588.2:p.Trp326Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+885T>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.976T>A
  hgvsp: ENSP00000358581.4:p.Trp326Arg
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Trp326Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-153940608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940608
    reference: chr 0
allele count: 1
allele frequency: 1.14370675358838e-5
allele num: 87435
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.965G>A
  hgvsp: ENSP00000358581.4:p.Arg322His
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.965G>A
  hgvsp: ENSP00000399588.2:p.Arg322His
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.962G>A
  hgvsp: ENSP00000358588.3:p.Arg321His
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+874G>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Arg322His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
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site quality: QD

X-153940609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940609
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940609
    reference: chr 0
allele count: 4
allele frequency: 4.573676206592954e-5
allele num: 87457
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+873C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.964C>T
  hgvsp: ENSP00000399588.2:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.961C>T
  hgvsp: ENSP00000358588.3:p.Arg321Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
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  hgvsp: ENSP00000358581.4:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20435
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg322Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-153940610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940610
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940610
    reference: chr 0
allele count: 1
allele frequency: 1.143327540473795e-5
allele num: 87464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.960G>A
  hgvsp: ENST00000369575.3:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.963G>A
  hgvsp: ENST00000424127.2:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+872G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.963G>A
  hgvsp: ENST00000369568.4:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 204
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg321Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-153940612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940612
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940612
    reference: chr 0
allele count: 3
allele frequency: 3.429041697147037e-5
allele num: 87488
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.961C>T
  hgvsp: ENSP00000399588.2:p.Arg321Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+870C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.958C>T
  hgvsp: ENSP00000358588.3:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.961C>T
  hgvsp: ENSP00000358581.4:p.Arg321Trp
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29757
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 241
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genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
hgvs: p.Arg321Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-153940617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940617
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940617
    reference: chr 0
allele count: 6
allele frequency: 6.85643762355872e-5
allele num: 87509
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.953C>G
  hgvsp: ENSP00000358588.3:p.Ser318Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+865C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.956C>G
  hgvsp: ENSP00000399588.2:p.Ser319Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.956C>G
  hgvsp: ENSP00000358581.4:p.Ser319Cys
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48434
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  variant carriers: 0
hgvs: p.Ser319Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

X-153940623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940623
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940623
    reference: chr 0
allele count: 1
allele frequency: 1.142465440420427e-5
allele num: 87530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+859A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.950A>G
  hgvsp: ENSP00000399588.2:p.His317Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.947A>G
  hgvsp: ENSP00000358588.3:p.His316Arg
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.950A>G
  hgvsp: ENSP00000358581.4:p.His317Arg
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His317Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

X-153940637-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940637
    reference: chr 0
allele count: 9
allele frequency: 1.027819651911745e-4
allele num: 87564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+845C>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.936C>A
  hgvsp: ENST00000424127.2:c.936C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.933C>A
  hgvsp: ENST00000369575.3:c.933C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.936C>A
  hgvsp: ENST00000369568.4:c.936C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
hgvs: p.Pro312Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

X-153940640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940640
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940640
    reference: chr 0
allele count: 1
allele frequency: 1.14200879346771e-5
allele num: 87565
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.933C>T
  hgvsp: ENST00000424127.2:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+842C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.933C>T
  hgvsp: ENST00000369568.4:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.930C>T
  hgvsp: ENST00000369575.3:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg311Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-153940642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940642
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940642
    reference: chr 0
allele count: 1
allele frequency: 1.14195662848725e-5
allele num: 87569
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+840C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.931C>T
  hgvsp: ENSP00000399588.2:p.Arg311Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.928C>T
  hgvsp: ENSP00000358588.3:p.Arg310Cys
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.931C>T
  hgvsp: ENSP00000358581.4:p.Arg311Cys
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg311Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

X-153940644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940644
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940644
    reference: chr 0
allele count: 1
allele frequency: 1.141800162135623e-5
allele num: 87581
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.929C>T
  hgvsp: ENSP00000358581.4:p.Pro310Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+838C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.929C>T
  hgvsp: ENSP00000399588.2:p.Pro310Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.926C>T
  hgvsp: ENSP00000358588.3:p.Pro309Leu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro310Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

X-153940651-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940651
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940651
    reference: chr 0
allele count: 1
allele frequency: 1.141578574853307e-5
allele num: 87598
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.922C>G
  hgvsp: ENSP00000399588.2:p.Pro308Ala
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.919C>G
  hgvsp: ENSP00000358588.3:p.Pro307Ala
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.922C>G
  hgvsp: ENSP00000358581.4:p.Pro308Ala
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+831C>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6204
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  variant carriers: 0
hgvs: p.Pro308Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-153940660-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940660
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940660
    reference: chr 0
allele count: 1
allele frequency: 1.14143524067162e-5
allele num: 87609
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.913T>C
  hgvsp: ENSP00000358581.4:p.Ser305Pro
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.913T>C
  hgvsp: ENSP00000399588.2:p.Ser305Pro
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.910T>C
  hgvsp: ENSP00000358588.3:p.Ser304Pro
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+822T>C
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
hgvs: p.Ser305Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-153940666-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940666
    reference: chr 0
allele count: 1
allele frequency: 1.141278917154563e-5
allele num: 87621
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.907A>G
  hgvsp: ENSP00000358581.4:p.Ile303Val
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.907A>G
  hgvsp: ENSP00000399588.2:p.Ile303Val
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+816A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.904A>G
  hgvsp: ENSP00000358588.3:p.Ile302Val
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48621
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hgvs: p.Ile303Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153940693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940693
    reference: chr 0
allele count: 1
allele frequency: 1.141578574853307e-5
allele num: 87598
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.880T>C
  hgvsp: ENST00000424127.2:c.880T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.880T>C
  hgvsp: ENST00000369568.4:c.880T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+789T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.877T>C
  hgvsp: ENST00000369575.3:c.877T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu294Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153940695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940695
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940695
    reference: chr 0
allele count: 16
allele frequency: 1.826588275586506e-4
allele num: 87595
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+787C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.878C>T
  hgvsp: ENSP00000358581.4:p.Ser293Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.875C>T
  hgvsp: ENSP00000358588.3:p.Ser292Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.878C>T
  hgvsp: ENSP00000399588.2:p.Ser293Phe
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 235
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser293Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-153940737-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940737
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940737
    reference: chr 0
allele count: 3
allele frequency: 3.459968168292851e-5
allele num: 86706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.833G>T
  hgvsp: ENSP00000358588.3:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+745G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.836G>T
  hgvsp: ENSP00000399588.2:p.Ser279Ile
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.836G>T
  hgvsp: ENSP00000358581.4:p.Ser279Ile
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 46929
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  variant carriers: 0
hgvs: p.Ser279Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-153940744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940744
    reference: chr 0
allele count: 36
allele frequency: 4.169707078077765e-4
allele num: 86337
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.826C>T
  hgvsp: ENST00000369575.3:c.826C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.829C>T
  hgvsp: ENST00000424127.2:c.829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+738C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.829C>T
  hgvsp: ENST00000369568.4:c.829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27795
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu277Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-153940749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940749
    reference: chr 0
allele count: 1
allele frequency: 1.162169072356646e-5
allele num: 86046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.824C>T
  hgvsp: ENSP00000358581.4:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+733C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.824C>T
  hgvsp: ENSP00000399588.2:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.821C>T
  hgvsp: ENSP00000358588.3:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
hgvs: p.Pro275Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-153940780-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940780
    reference: chr 0
allele count: 27
allele frequency: 3.215051202667301e-4
allele num: 83980
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.793G>T
  hgvsp: ENSP00000399588.2:p.Gly265Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.793G>T
  hgvsp: ENSP00000358581.4:p.Gly265Trp
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+702G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.790G>T
  hgvsp: ENSP00000358588.3:p.Gly264Trp
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 528
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Gly265Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

X-153940782-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940782
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940782
    reference: chr 0
allele count: 1
allele frequency: 1.192876143670003e-5
allele num: 83831
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.791A>G
  hgvsp: ENSP00000358581.4:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.791A>G
  hgvsp: ENSP00000399588.2:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+700A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.788A>G
  hgvsp: ENSP00000358588.3:p.Asn263Ser
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6772
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn264Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

X-153940790-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940790
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940790
    reference: chr 0
allele count: 1
allele frequency: 1.198035222235534e-5
allele num: 83470
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.783A>G
  hgvsp: ENST00000424127.2:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.783A>G
  hgvsp: ENST00000369568.4:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.780A>G
  hgvsp: ENST00000369575.3:c.780A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+692A>G
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1223
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hgvs: p.Arg261Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

X-153940793-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940793
    reference: chr 0
allele count: 2
allele frequency: 2.404019520638508e-5
allele num: 83194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.780T>C
  hgvsp: ENST00000369568.4:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.780T>C
  hgvsp: ENST00000424127.2:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+689T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.777T>C
  hgvsp: ENST00000369575.3:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1900
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genotype quality: GenotypeQuality
  all individuals: 529
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  variant carriers: 0
hgvs: p.Ser260Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-153940794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940794
    reference: chr 0
allele count: 2
allele frequency: 2.405349497281955e-5
allele num: 83148
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.779G>A
  hgvsp: ENSP00000399588.2:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.776G>A
  hgvsp: ENSP00000358588.3:p.Ser259Asn
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+688G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.779G>A
  hgvsp: ENSP00000358581.4:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser260Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-153940809-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940809
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940809
    reference: chr 0
allele count: 1
allele frequency: 1.216382235953826e-5
allele num: 82211
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.764C>G
  hgvsp: ENSP00000399588.2:p.Ala255Gly
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.764C>G
  hgvsp: ENSP00000358581.4:p.Ala255Gly
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+673C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.761C>G
  hgvsp: ENSP00000358588.3:p.Ala254Gly
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2457
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  variant carriers: 0
hgvs: p.Ala255Gly
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-153940818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940818
    reference: chr 0
allele count: 2
allele frequency: 2.449299500342902e-5
allele num: 81656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.752G>T
  hgvsp: ENSP00000358588.3:p.Arg251Met
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+664G>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.755G>T
  hgvsp: ENSP00000358581.4:p.Arg252Met
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.755G>T
  hgvsp: ENSP00000399588.2:p.Arg252Met
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg252Met
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-153940820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940820
    reference: chr 0
allele count: 13
allele frequency: 1.593801338793125e-4
allele num: 81566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.753G>A
  hgvsp: ENST00000369568.4:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+662G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.753G>A
  hgvsp: ENST00000424127.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.750G>A
  hgvsp: ENST00000369575.3:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser251Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-153940821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940821
    reference: chr 0
allele count: 4
allele frequency: 4.90689172943399e-5
allele num: 81518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+661C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.752C>T
  hgvsp: ENSP00000358581.4:p.Ser251Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.749C>T
  hgvsp: ENSP00000358588.3:p.Ser250Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.752C>T
  hgvsp: ENSP00000399588.2:p.Ser251Leu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25828
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ser251Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-153940823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940823
    reference: chr 0
allele count: 4
allele frequency: 4.908818692781582e-5
allele num: 81486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.750C>T
  hgvsp: ENST00000369568.4:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+659C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.747C>T
  hgvsp: ENST00000369575.3:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.750C>T
  hgvsp: ENST00000424127.2:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
hgvs: p.Ser250Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-153940824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940824
    reference: chr 0
allele count: 1
allele frequency: 1.227355294810742e-5
allele num: 81476
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.749C>T
  hgvsp: ENSP00000399588.2:p.Ser250Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.749C>T
  hgvsp: ENSP00000358581.4:p.Ser250Phe
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+658C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.746C>T
  hgvsp: ENSP00000358588.3:p.Ser249Phe
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser250Phe
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-153940828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940828
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940828
    reference: chr 0
allele count: 6
allele frequency: 7.376444553725105e-5
allele num: 81340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.742C>T
  hgvsp: ENSP00000358588.3:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+654C>T
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.745C>T
  hgvsp: ENSP00000358581.4:p.Pro249Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.745C>T
  hgvsp: ENSP00000399588.2:p.Pro249Ser
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1202
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  variant carriers: 0
hgvs: p.Pro249Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153940837-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940837
    reference: chr 0
allele count: 1
allele frequency: 1.232802406430297e-5
allele num: 81116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.733C>G
  hgvsp: ENSP00000358588.3:p.Gln245Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+645C>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.736C>G
  hgvsp: ENSP00000358581.4:p.Gln246Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.736C>G
  hgvsp: ENSP00000399588.2:p.Gln246Glu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln246Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-153940861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940861
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940861
    reference: chr 0
allele count: 3314
allele frequency: 4.099202177005381e-2
allele num: 80845
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.712C>T
  hgvsp: ENSP00000358581.4:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.712C>T
  hgvsp: ENSP00000399588.2:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.709C>T
  hgvsp: ENSP00000358588.3:p.Pro237Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+621C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
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  variant carriers: 110
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 12
hgvs: p.Pro238Ser
num of homozygotes: 57
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

X-153940864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940864
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940864
    reference: chr 0
allele count: 1
allele frequency: 1.236904275978082e-5
allele num: 80847
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.709C>T
  hgvsp: ENSP00000358581.4:p.His237Tyr
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.709C>T
  hgvsp: ENSP00000399588.2:p.His237Tyr
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.706C>T
  hgvsp: ENSP00000358588.3:p.His236Tyr
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+618C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34
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  variant carriers: 0
hgvs: p.His237Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153940882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940882
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940882
    reference: chr 0
allele count: 2
allele frequency: 2.476964232636481e-5
allele num: 80744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.691C>T
  hgvsp: ENSP00000358581.4:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.688C>T
  hgvsp: ENSP00000358588.3:p.Pro230Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.691C>T
  hgvsp: ENSP00000399588.2:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+600C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20613
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 400
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro231Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153940886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940886
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940886
    reference: chr 0
allele count: 1
allele frequency: 1.239280226044713e-5
allele num: 80692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.684G>A
  hgvsp: ENST00000369575.3:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.687G>A
  hgvsp: ENST00000369568.4:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.687G>A
  hgvsp: ENST00000424127.2:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+596G>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 45074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro229Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

X-153940887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940887
    reference: chr 0
allele count: 1
allele frequency: 1.239357021577206e-5
allele num: 80687
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.686C>T
  hgvsp: ENSP00000399588.2:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.686C>T
  hgvsp: ENSP00000358581.4:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.683C>T
  hgvsp: ENSP00000358588.3:p.Pro228Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+595C>T
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20605
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45109
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro229Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

X-153940903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940903
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940903
    reference: chr 0
allele count: 1
allele frequency: 1.241665321529235e-5
allele num: 80537
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.670G>A
  hgvsp: ENSP00000399588.2:p.Val224Ile
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.667G>A
  hgvsp: ENSP00000358588.3:p.Val223Ile
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+579G>A
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.670G>A
  hgvsp: ENSP00000358581.4:p.Val224Ile
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 898
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  variant carriers: 0
hgvs: p.Val224Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-153940910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940910
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940910
    reference: chr 0
allele count: 1
allele frequency: 1.243348087730641e-5
allele num: 80428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.663T>C
  hgvsp: ENST00000369568.4:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+572T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.663T>C
  hgvsp: ENST00000424127.2:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.660T>C
  hgvsp: ENST00000369575.3:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 126
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp221Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-153940913-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940913
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940913
    reference: chr 0
allele count: 1
allele frequency: 1.244911424552143e-5
allele num: 80327
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.657T>A
  hgvsp: ENSP00000358588.3:p.Asp219Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.660T>A
  hgvsp: ENSP00000358581.4:p.Asp220Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.660T>A
  hgvsp: ENSP00000399588.2:p.Asp220Glu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+569T>A
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20478
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Asp220Glu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

X-153940918-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940918
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940918
    reference: chr 0
allele count: 2
allele frequency: 2.49482324177332e-5
allele num: 80166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+564T>C
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.655T>C
  hgvsp: ENSP00000358581.4:p.Phe219Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.655T>C
  hgvsp: ENSP00000399588.2:p.Phe219Leu
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.652T>C
  hgvsp: ENSP00000358588.3:p.Phe218Leu
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Phe219Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-153940928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153940928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153940928
    reference: chr 0
allele count: 16
allele frequency: 2.008586708177459e-4
allele num: 79658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160219
  ensembl transcript: ENST00000496390
  gene symbol: GAB3
  hgvsc: ENST00000496390.1:n.616+554A>G
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358588
  ensembl transcript: ENST00000369575
  gene symbol: GAB3
  hgvsc: ENST00000369575.3:c.642A>G
  hgvsp: ENST00000369575.3:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000399588
  ensembl transcript: ENST00000424127
  gene symbol: GAB3
  hgvsc: ENST00000424127.2:c.645A>G
  hgvsp: ENST00000424127.2:c.645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160219
  ensembl protein: ENSP00000358581
  ensembl transcript: ENST00000369568
  gene symbol: GAB3
  hgvsc: ENST00000369568.4:c.645A>G
  hgvsp: ENST00000369568.4:c.645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20135
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Glu215Glu
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.019679820536352e-4
allele num: 9807
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.691317e6

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-1

QD
type: SiteQuality
SIO_000300: 3.279e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.541069502234551e-4
allele num: 6489
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.584e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.591171e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.761e1

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6281
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.99188818170473e-4
allele num: 8013
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44891
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.443584e6

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

MQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

FS
type: SiteQuality
SIO_000300: 1.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30708
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8807
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.246882793017456e-4
allele num: 8020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8163
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.441658e6

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7811
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3773
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41537
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5783
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.521838380763963e-4
allele num: 6571
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.534e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.561e0

DP
type: SiteQuality
SIO_000300: 1.151541e6

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 6.17e0

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39785
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.307531380753138e-4
allele num: 7648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7951
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3603
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 1.512e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

FS
type: SiteQuality
SIO_000300: 3.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

DP
type: SiteQuality
SIO_000300: 1.032055e6

VQSLOD
type: SiteQuality
SIO_000300: -7.348e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

GenotypeQuality
all individuals: 3300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5077
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7391
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37607
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5383
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.902587519025875e-4
allele num: 5256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.57761e5

QD
type: SiteQuality
SIO_000300: 2.898e1

VQSLOD
type: SiteQuality
SIO_000300: -1.209e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 467
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.661839863713799e-5
allele num: 37568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.601e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

DP
type: SiteQuality
SIO_000300: 9.57622e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

QD
type: SiteQuality
SIO_000300: 1.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.323679727427598e-5
allele num: 37568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3427
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 467
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.601e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

DP
type: SiteQuality
SIO_000300: 9.57622e5

QD
type: SiteQuality
SIO_000300: 1.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176055509820064e-4
allele num: 8503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088380252276334e-5
allele num: 47884
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.26e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 3.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.94e1

DP
type: SiteQuality
SIO_000300: 2.825596e6

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
all individuals: 2499
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 29
allele frequency: 2.958579881656805e-3
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47893
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.594896331738437e-3
allele num: 627
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.368e1

DP
type: SiteQuality
SIO_000300: 2.831541e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.351e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.197000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.701e0

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26320
bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 7
allele frequency: 1.05501130369254e-3
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47917
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.586e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.072e0

FS
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.130000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 2.83887e6

QD
type: SiteQuality
SIO_000300: 1.704e1

GenotypeQuality
all individuals: 26317
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47953
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.14799699280421e-4
allele num: 9311
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10079
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.64e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 2.847533e6

QD
type: SiteQuality
SIO_000300: 1.516e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.865e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10087
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175226231049477e-4
allele num: 8509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 4.945e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 2.847968e6

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26316
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.972357079163777e-4
allele num: 10093
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.75e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.848227e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 3.169e1

GenotypeQuality
all individuals: 5288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085027418110548e-5
allele num: 47961
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.944125222904696e-4
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 2.848246e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.066e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.302e0

QD
type: SiteQuality
SIO_000300: 1.769e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 16314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085418752085419e-5
allele num: 47952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.845766e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.195e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.726e1

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9985
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47899
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.5306578792515e-4
allele num: 8497
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 6.302e0

DP
type: SiteQuality
SIO_000300: 2.817756e6

QD
type: SiteQuality
SIO_000300: 1.504e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 3228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508523155830442e-4
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47889
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.01e-2

QD
type: SiteQuality
SIO_000300: 2.032e1

DP
type: SiteQuality
SIO_000300: 2.814656e6

FS
type: SiteQuality
SIO_000300: 8.427e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.416e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 2865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26295
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1974
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088511100436499e-5
allele num: 47881
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177163037080636e-4
allele num: 8495
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.626e0

QD
type: SiteQuality
SIO_000300: 1.76e1

DP
type: SiteQuality
SIO_000300: 2.797444e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 2.321e0

VQSLOD
type: SiteQuality
SIO_000300: -9.525e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11489
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9963
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088729217144289e-5
allele num: 47876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

DP
type: SiteQuality
SIO_000300: 2.788975e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.246e0

FS
type: SiteQuality
SIO_000300: 4.519e0

VQSLOD
type: SiteQuality
SIO_000300: -3.368e0

QD
type: SiteQuality
SIO_000300: 3.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 10166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089820484420388e-5
allele num: 47851
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.812e-1

DP
type: SiteQuality
SIO_000300: 2.774161e6

QD
type: SiteQuality
SIO_000300: 3.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4377
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.647717910693689e-4
allele num: 6069
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.75234521575985e-4
allele num: 7995
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43717
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 6.681e0

DP
type: SiteQuality
SIO_000300: 1.310468e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

GenotypeQuality
all individuals: 30835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43777
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 535
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8997
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.822821728034998e-4
allele num: 5486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6081
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.320059e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5555
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8041
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.622323166774821e-4
allele num: 6164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4407
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9055
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44269
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.23e0

DP
type: SiteQuality
SIO_000300: 1.383039e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 1923
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.103265666372463e-4
allele num: 9064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6183
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8053
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.504504504504505e-5
allele num: 44400
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 7.167174341515857e-4
allele num: 5581
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.257e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.783e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

DP
type: SiteQuality
SIO_000300: 1.393043e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40527
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6257
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.232142857142857e-5
allele num: 44800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4429
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.456e-1

DP
type: SiteQuality
SIO_000300: 1.418135e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.006e1

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.160433815110074e-5
allele num: 46287
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

DP
type: SiteQuality
SIO_000300: 1.479757e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.655e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 44448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.275514130574202e-5
allele num: 46778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7109
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.389e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.49562e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8445
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47111
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 1.508133e6

MQRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 7.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7883
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47221
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.513488e6

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.857e0

FS
type: SiteQuality
SIO_000300: 5.218e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.051e0

MQ
type: SiteQuality
SIO_000300: 5.818e1

QD
type: SiteQuality
SIO_000300: 9.18e0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.312865620133833e-5
allele num: 47522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8693
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 1.532539e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

QD
type: SiteQuality
SIO_000300: 1.492e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9027
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.539954e6

QD
type: SiteQuality
SIO_000300: 1.572e1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089209234304815e-5
allele num: 47865
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.826e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.558754e6

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087551927854205e-5
allele num: 47903
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

DP
type: SiteQuality
SIO_000300: 1.562786e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9893
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086854900978735e-5
allele num: 47919
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.565495e6

FS
type: SiteQuality
SIO_000300: 5.426e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.434e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

GenotypeQuality
all individuals: 48334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9905
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.292306041420754e-4
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47927
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.566228e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 1.747e0

VQSLOD
type: SiteQuality
SIO_000300: -4.8e-2

QD
type: SiteQuality
SIO_000300: 1.619e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9911
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086463027875146e-5
allele num: 47928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.485e0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.582e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.34e-2

QD
type: SiteQuality
SIO_000300: 3.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

DP
type: SiteQuality
SIO_000300: 1.566038e6

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 2.146613716861651e-4
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086288909288158e-5
allele num: 47932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.566866e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.274e1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9947
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47936
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.439841150584952e-4
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 1.567942e6

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.089e-1

FS
type: SiteQuality
SIO_000300: 8.074e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.576e1

GenotypeQuality
all individuals: 1278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6214
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085984271678592e-5
allele num: 47939
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 2.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 3.328e1

DP
type: SiteQuality
SIO_000300: 1.567628e6

VQSLOD
type: SiteQuality
SIO_000300: -3.263e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 48274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.293688278231001e-4
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9993
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.042818111664963e-4
allele num: 47947
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.053e-1

QD
type: SiteQuality
SIO_000300: 1.828e1

DP
type: SiteQuality
SIO_000300: 1.569515e6

FS
type: SiteQuality
SIO_000300: 1.104e0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174950064622254e-4
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9995
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.436e1

VQSLOD
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.65e-2

DP
type: SiteQuality
SIO_000300: 1.568743e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9997
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47947
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.569512e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.076e0

VQSLOD
type: SiteQuality
SIO_000300: -6.445e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085462242706096e-5
allele num: 47951
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10007
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 1.569384e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

FS
type: SiteQuality
SIO_000300: 6.908e0

VQSLOD
type: SiteQuality
SIO_000300: -4.012e-1

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.979044007584074e-5
allele num: 10021
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47953
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 6.656e0

DP
type: SiteQuality
SIO_000300: 1.570093e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47956
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.34e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

DP
type: SiteQuality
SIO_000300: 1.570453e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 3.126e1

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10037
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085157846448976e-5
allele num: 47958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.570932e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 1.729e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
all individuals: 6221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47942
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.570704e6

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 2.674e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.692e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.587301587301587e-3
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.460067163089502e-4
allele num: 47943
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.585533376261e-4
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 1.572155e6

VQSLOD
type: SiteQuality
SIO_000300: 1.12e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.753e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.293e0

QD
type: SiteQuality
SIO_000300: 1.528e1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47759
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.068033749866496e-4
allele num: 9363
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.355157795572303e-4
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.475e0

QD
type: SiteQuality
SIO_000300: 1.683e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.545753e6

FS
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeQuality
all individuals: 46232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 4.006599104407259e-3
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.14938205265986e-4
allele num: 9305
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47678
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.602e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.48e0

QD
type: SiteQuality
SIO_000300: 1.524e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e0

DP
type: SiteQuality
SIO_000300: 1.539356e6

GenotypeQuality
all individuals: 5951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45889
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101546738399462e-5
allele num: 47584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 9.744999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.529302e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.87e-1

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1921
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 3.588039867109634e-3
allele num: 7525
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8437
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

QD
type: SiteQuality
SIO_000300: 2.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.331e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.686e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.59e-2

DP
type: SiteQuality
SIO_000300: 1.497923e6

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.34752728742757e-4
allele num: 7421
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 3.149e1

VQSLOD
type: SiteQuality
SIO_000300: -2.083e-1

DP
type: SiteQuality
SIO_000300: 1.494733e6

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077121930202499e-4
allele num: 9284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.083e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: -1.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

QD
type: SiteQuality
SIO_000300: 1.357e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

FS
type: SiteQuality
SIO_000300: 9.991e0

DP
type: SiteQuality
SIO_000300: 1.489825e6

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5852
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7013
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.276977032633335e-5
allele num: 46762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

DP
type: SiteQuality
SIO_000300: 1.487049e6

QD
type: SiteQuality
SIO_000300: 1.753e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8425
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.279173263725448e-5
allele num: 46738
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.43e-1

DP
type: SiteQuality
SIO_000300: 1.48676e6

FS
type: SiteQuality
SIO_000300: 1.073e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.193e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8399
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.15340884620354e-5
allele num: 46438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6413
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

QD
type: SiteQuality
SIO_000300: 7.17e0

DP
type: SiteQuality
SIO_000300: 1.475692e6

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.702e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43791
bin: 6.25e1
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GenotypeQuality
all individuals: 1900
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.321614555197822e-5
allele num: 46279
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6057
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.49e-1

QD
type: SiteQuality
SIO_000300: 2.45e1

MQRankSum
type: SiteQuality
SIO_000300: 9.01e-1

FS
type: SiteQuality
SIO_000300: 6.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

DP
type: SiteQuality
SIO_000300: 1.47023e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 2941
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8375
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.295196977873718e-3
allele num: 9265
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.661405549094534e-4
allele num: 6019
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.47008e6

FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.695e1

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5840
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.387774594078319e-4
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.163425134673215e-5
allele num: 46223
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5991
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.522765341860819e-4
allele num: 6567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.468945e6

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

FS
type: SiteQuality
SIO_000300: 2.426e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 2.11e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.89e-1

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
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GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6563
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46216
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.777830864787386e-4
allele num: 8372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.727e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 1.744e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

DP
type: SiteQuality
SIO_000300: 1.468392e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.163940102137973e-5
allele num: 46212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5965
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

QD
type: SiteQuality
SIO_000300: 2.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

DP
type: SiteQuality
SIO_000300: 1.468027e6

VQSLOD
type: SiteQuality
SIO_000300: -2.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
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GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5905
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.179609907861673e-4
allele num: 8357
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46157
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.466765e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.939e0

FS
type: SiteQuality
SIO_000300: 1.756e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.271e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 1894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5797
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.525320317266626e-4
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46057
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.461e0

QD
type: SiteQuality
SIO_000300: 2.008e1

DP
type: SiteQuality
SIO_000300: 1.463066e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: -7.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

GenotypeQuality
all individuals: 1063
bin: 7.25e1
variant carriers: 17

GenotypeQuality
all individuals: 42784
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 852
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 540
bin: 2.25e1
variant carriers: 23

Latino
type: Population
allele count: 93
allele frequency: 1.004970823427707e-2
allele num: 9254
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 232
allele frequency: 5.12707182320442e-2
allele num: 4525
num of homozygotes: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2689
allele frequency: 5.853669155582646e-2
allele num: 45937
num of homozygotes: 51

Other
type: Population
allele count: 24
allele frequency: 4.308797127468582e-2
allele num: 557
num of homozygotes: 0

African
type: Population
allele count: 86
allele frequency: 1.02920057443753e-2
allele num: 8356
num of homozygotes: 1

South Asian
type: Population
allele count: 189
allele frequency: 3.333333333333333e-2
allele num: 5670
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.654711e6

QD
type: SiteQuality
SIO_000300: 1.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.969e-1

FS
type: SiteQuality
SIO_000300: 1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5974
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45945
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.080730573867935e-4
allele num: 9253
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.439178e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.351e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.363e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.551e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.102e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 5941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5627
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 555
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45900
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.057636447026449e-4
allele num: 6541
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.158e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 1.43411e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6539
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.179884030169595e-5
allele num: 45874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.431474e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

QD
type: SiteQuality
SIO_000300: 2.55e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180074122520166e-5
allele num: 45870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6539
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5619
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.156e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.294e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.795e0

DP
type: SiteQuality
SIO_000300: 1.431326e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5892
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8345
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.184169142058361e-5
allele num: 45784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6531
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.424571e6

VQSLOD
type: SiteQuality
SIO_000300: -3.941e-1

QD
type: SiteQuality
SIO_000300: 3.238e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 889
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44658
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9225
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.790510295434199e-4
allele num: 5585
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4465
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45741
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 1.420874e6

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.779e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

GenotypeQuality
all individuals: 1085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.188662727073758e-5
allele num: 45690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8331
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.418018e6

VQSLOD
type: SiteQuality
SIO_000300: -1.841e-1

GenotypeQuality
all individuals: 1514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192742023900888e-5
allele num: 45605
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.806684733514002e-4
allele num: 5535
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.068e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.31e0

FS
type: SiteQuality
SIO_000300: 3.465e0

DP
type: SiteQuality
SIO_000300: 1.413328e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 1.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1