X-30737512-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737511
    reference: chr 0
allele count: 1
allele frequency: 1.39312631476296e-5
allele num: 71781
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2183delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1055-20delT
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*911-20delT
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1037-20delT
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1037-20delT
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4315delA
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.440-20delT
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24599
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: GT
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-30737514-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737514
    reference: chr 0
allele count: 1
allele frequency: 1.37164803511419e-5
allele num: 72905
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1037-22T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*911-22T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.440-22T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2185T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1055-22T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1037-22T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4314A>G
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 363
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genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-30737528-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737528
    reference: chr 0
allele count: 9
allele frequency: 1.139702157836085e-4
allele num: 78968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*911-8A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1055-8A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1037-8A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1037-8A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4300T>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2171A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.440-8A>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1037-8A>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

X-30737529-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737529
    reference: chr 0
allele count: 6
allele frequency: 7.550018875047188e-5
allele num: 79470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1037-7A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*911-7A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4299T>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1037-7A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1055-7A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2170A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.440-7A>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 1
hgvs: c.1037-7A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-30737540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737540
    reference: chr 0
allele count: 1
allele frequency: 1.209453085314821e-5
allele num: 82682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1041A>G
  hgvsp: ENST00000378945.3:c.1041A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2159A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*915A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1041A>G
  hgvsp: ENST00000378943.3:c.1041A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1059A>G
  hgvsp: ENST00000378946.3:c.1059A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.444A>G
  hgvsp: ENST00000427190.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4288T>C
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys347Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-30737550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737550
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737550
    reference: chr 0
allele count: 3
allele frequency: 3.544674717016802e-5
allele num: 84634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1051G>A
  hgvsp: ENSP00000368228.3:p.Glu351Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1069G>A
  hgvsp: ENSP00000368229.3:p.Glu357Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1051G>A
  hgvsp: ENSP00000368226.3:p.Glu351Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*925G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.454G>A
  hgvsp: ENSP00000401720.1:p.Glu152Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2149G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4278C>T
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu351Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-30737551-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737551
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737551
    reference: chr 0
allele count: 2
allele frequency: 2.358184669441464e-5
allele num: 84811
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*926A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.455A>T
  hgvsp: ENSP00000401720.1:p.Glu152Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1052A>T
  hgvsp: ENSP00000368228.3:p.Glu351Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1070A>T
  hgvsp: ENSP00000368229.3:p.Glu357Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1052A>T
  hgvsp: ENSP00000368226.3:p.Glu351Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2148A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4277T>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu351Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-30737557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737557
    reference: chr 0
allele count: 9
allele frequency: 1.052520787285549e-4
allele num: 85509
alternate allele: A
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4271C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.461G>A
  hgvsp: ENSP00000401720.1:p.Gly154Asp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2142G>A
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1058G>A
  hgvsp: ENSP00000368226.3:p.Gly353Asp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*932G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1076G>A
  hgvsp: ENSP00000368229.3:p.Gly359Asp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1058G>A
  hgvsp: ENSP00000368228.3:p.Gly353Asp
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly353Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-30737565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737565
    reference: chr 0
allele count: 1
allele frequency: 1.162750136623141e-5
allele num: 86003
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.469T>C
  hgvsp: ENSP00000401720.1:p.Tyr157His
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1084T>C
  hgvsp: ENSP00000368229.3:p.Tyr362His
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1066T>C
  hgvsp: ENSP00000368226.3:p.Tyr356His
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4263A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2134T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1066T>C
  hgvsp: ENSP00000368228.3:p.Tyr356His
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*940T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr356His
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-30737573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737573
    reference: chr 0
allele count: 340
allele frequency: 4.064603282764887e-3
allele num: 83649
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1092C>G
  hgvsp: ENSP00000368229.3:p.Cys364Trp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4255G>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1074C>G
  hgvsp: ENSP00000368226.3:p.Cys358Trp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.477C>G
  hgvsp: ENSP00000401720.1:p.Cys159Trp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2126C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1074C>G
  hgvsp: ENSP00000368228.3:p.Cys358Trp
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*948C>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38236
  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 9.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 16
hgvs: p.Cys358Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

X-30737576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737576
    reference: chr 0
allele count: 1
allele frequency: 1.153881657897166e-5
allele num: 86664
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2123C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.480C>T
  hgvsp: ENST00000427190.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1077C>T
  hgvsp: ENST00000378943.3:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1077C>T
  hgvsp: ENST00000378945.3:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*951C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1095C>T
  hgvsp: ENST00000378946.3:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4252G>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr359Tyr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-30737579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737579
    reference: chr 0
allele count: 8
allele frequency: 9.223177845926814e-5
allele num: 86738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.483C>T
  hgvsp: ENST00000427190.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2120C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1080C>T
  hgvsp: ENST00000378945.3:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1098C>T
  hgvsp: ENST00000378946.3:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*954C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1080C>T
  hgvsp: ENST00000378943.3:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4249G>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38521
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4796
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Phe360Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

X-30737580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737580
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737580
    reference: chr 0
allele count: 1
allele frequency: 1.152193199755735e-5
allele num: 86791
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4248C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.484G>A
  hgvsp: ENSP00000401720.1:p.Val162Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1081G>A
  hgvsp: ENSP00000368226.3:p.Val361Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*955G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1099G>A
  hgvsp: ENSP00000368229.3:p.Val367Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1081G>A
  hgvsp: ENSP00000368228.3:p.Val361Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2119G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val361Ile
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-30737593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737593
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737593
    reference: chr 0
allele count: 1
allele frequency: 1.149729238764271e-5
allele num: 86977
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*968C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.497C>T
  hgvsp: ENSP00000401720.1:p.Ser166Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2106C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1112C>T
  hgvsp: ENSP00000368229.3:p.Ser371Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1094C>T
  hgvsp: ENSP00000368226.3:p.Ser365Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4235G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1094C>T
  hgvsp: ENSP00000368228.3:p.Ser365Leu
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser365Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-30737594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737594
    reference: chr 0
allele count: 39
allele frequency: 4.483119331440461e-4
allele num: 86993
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*969G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1095G>A
  hgvsp: ENST00000378943.3:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1113G>A
  hgvsp: ENST00000378946.3:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2105G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1095G>A
  hgvsp: ENST00000378945.3:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.498G>A
  hgvsp: ENST00000427190.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4234C>T
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44585
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Ser365Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

X-30737597-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737597
    reference: chr 0
allele count: 7
allele frequency: 8.043665613329504e-5
allele num: 87025
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4231C>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*972G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.501G>T
  hgvsp: ENST00000427190.1:c.501G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1098G>T
  hgvsp: ENST00000378943.3:c.1098G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1098G>T
  hgvsp: ENST00000378945.3:c.1098G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1116G>T
  hgvsp: ENST00000378946.3:c.1116G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2102G>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Gly366Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-30737600-ATATGCACCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737591
    reference: chr 0
allele count: 1
allele frequency: 1.148976262150424e-5
allele num: 87034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.508_516delGCACCTTAT
  hgvsp: ENSP00000401720.1:p.Ala170_Tyr172del
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsp: ENSP00000368229.3:p.Ala375_Tyr377del
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsp: ENSP00000368226.3:p.Ala369_Tyr371del
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsp: ENSP00000368228.3:p.Ala369_Tyr371del
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala369_Tyr371del
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ATATGCACCT
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-30737625-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737625
    reference: chr 0
allele count: 1
allele frequency: 1.153163126455868e-5
allele num: 86718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1144G>T
  hgvsp: ENSP00000368229.3:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.529G>T
  hgvsp: ENSP00000401720.1:p.Ala177Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1126G>T
  hgvsp: ENSP00000368228.3:p.Ala376Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2074G>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4203C>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1126G>T
  hgvsp: ENSP00000368226.3:p.Ala376Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1000G>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4788
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala376Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-30737636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737636
    reference: chr 0
allele count: 1
allele frequency: 1.160133183289442e-5
allele num: 86197
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+4A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+4A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+4A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+4A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2063A>G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+4A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4192T>C
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1133+4A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-30737653-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737653
    reference: chr 0
allele count: 1
allele frequency: 1.172552882134984e-5
allele num: 85284
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4175C>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+21G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+21G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+21G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+21G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2046G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+21G>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-30737663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737663
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737663
    reference: chr 0
allele count: 1
allele frequency: 1.179384361363368e-5
allele num: 84790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2036G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+31G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+31G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4165C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+31G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+31G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+31G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1011
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genotype depth: GenotypeDepth
  all individuals: 471
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27445
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3788
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genotype quality: GenotypeQuality
  all individuals: 470
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-30737667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737667
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737667
    reference: chr 0
allele count: 1
allele frequency: 1.182438424519043e-5
allele num: 84571
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2032C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4161G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+35C>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 120
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 195
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-30737669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737669
    reference: chr 0
allele count: 8
allele frequency: 9.472612309659696e-5
allele num: 84454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+37T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+37T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+37T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2030T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4159A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+37T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+37T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2735
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9641
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-30737672-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737672
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737672
    reference: chr 0
allele count: 1
allele frequency: 1.186577436043476e-5
allele num: 84276
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+40T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+40T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+40T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2027T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+40T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4156A>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+40T>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
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genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
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genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 471
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genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 9659
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-30737673-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030737673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030737673
    reference: chr 0
allele count: 2
allele frequency: 2.375748360733631e-5
allele num: 84184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-2026T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1133+41T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1007+41T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1133+41T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.536+41T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1151+41T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+4155A>G
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 78
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

X-30738084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738084
    reference: chr 0
allele count: 1
allele frequency: 1.203977943124082e-5
allele num: 83058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-44G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1615G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-44G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-44G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-44G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3744C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-44G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-30738089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738089
    reference: chr 0
allele count: 2
allele frequency: 2.403383964622188e-5
allele num: 83216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-39A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-39A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3739T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1610A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-39A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-39A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-39A>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-30738090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738090
    reference: chr 0
allele count: 35
allele frequency: 4.203699255344703e-4
allele num: 83260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3738A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1609T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-38T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 633
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8964
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genotype depth: GenotypeDepth
  all individuals: 308
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 224
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genotype depth: GenotypeDepth
  all individuals: 431
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genotype depth: GenotypeDepth
  all individuals: 2367
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genotype depth: GenotypeDepth
  all individuals: 15399
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 172
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20800
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

X-30738093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738093
    reference: chr 0
allele count: 112
allele frequency: 1.344570097721434e-3
allele num: 83298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1606C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-35C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3735G>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 16904
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
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genotype depth: GenotypeDepth
  all individuals: 307
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 223
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 215
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genotype quality: GenotypeQuality
  all individuals: 4056
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genotype quality: GenotypeQuality
  all individuals: 4594
  bin: 6.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-30738096-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738096
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738096
    reference: chr 0
allele count: 67
allele frequency: 8.019918125014963e-4
allele num: 83542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-32T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-32T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1603T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-32T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3732A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-32T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-32T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 119
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 222
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-30738102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738102
    reference: chr 0
allele count: 1
allele frequency: 1.190405333015892e-5
allele num: 84005
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-26C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-26C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-26C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-26C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-26C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3726G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1597C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-30738110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738110
    reference: chr 0
allele count: 1
allele frequency: 1.17515717727246e-5
allele num: 85095
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-18C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-18C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1589C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-18C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-18C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-18C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3718G>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9580
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-30738117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738117
    reference: chr 0
allele count: 8
allele frequency: 9.317710638496122e-5
allele num: 85858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1582C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3711G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1008-11C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1134-11C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.537-11C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1134-11C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1152-11C>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
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genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-30738192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738192
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738192
    reference: chr 0
allele count: 1
allele frequency: 1.1490950876185e-5
allele num: 87025
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3636C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.601G>A
  hgvsp: ENSP00000401720.1:p.Val201Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1072G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1216G>A
  hgvsp: ENSP00000368229.3:p.Val406Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1198G>A
  hgvsp: ENSP00000368228.3:p.Val400Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1507G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1198G>A
  hgvsp: ENSP00000368226.3:p.Val400Ile
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2206
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genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val400Ile
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

X-30738203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738203
    reference: chr 0
allele count: 1
allele frequency: 1.155321410416378e-5
allele num: 86556
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1209A>G
  hgvsp: ENST00000378943.3:c.1209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1227A>G
  hgvsp: ENST00000378946.3:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1209A>G
  hgvsp: ENST00000378945.3:c.1209A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3625T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1496A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1083A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.612A>G
  hgvsp: ENST00000427190.1:c.612A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln403Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-30738207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738207
    reference: chr 0
allele count: 1
allele frequency: 1.158641145664365e-5
allele num: 86308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1231C>T
  hgvsp: ENSP00000368229.3:p.Arg411Ter
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3621G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.616C>T
  hgvsp: ENSP00000401720.1:p.Arg206Ter
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1213C>T
  hgvsp: ENSP00000368226.3:p.Arg405Ter
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1087C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1492C>T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1213C>T
  hgvsp: ENSP00000368228.3:p.Arg405Ter
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg405Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-30738217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738217
    reference: chr 0
allele count: 2
allele frequency: 2.335220970284313e-5
allele num: 85645
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3611G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1218+5C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.621+5C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1092+5C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1482C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1218+5C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1236+5C>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12807
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21976
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9576
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1218+5C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-30738219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738219
    reference: chr 0
allele count: 1
allele frequency: 1.168169711695715e-5
allele num: 85604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.621+7A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1236+7A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3609T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1218+7A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1218+7A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1092+7A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1480A>G
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1218+7A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-30738240-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738240
    reference: chr 0
allele count: 1
allele frequency: 1.192805000238561e-5
allele num: 83836
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1218+28A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.621+28A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1236+28A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1218+28A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1459A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1092+28A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3588T>C
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-30738240-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738240
    reference: chr 0
allele count: 1
allele frequency: 1.192805000238561e-5
allele num: 83836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1218+28A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1236+28A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1459A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1092+28A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3588T>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.621+28A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1218+28A>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 1904
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2368
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genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2974
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 800
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genotype quality: GenotypeQuality
  all individuals: 537
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genotype quality: GenotypeQuality
  all individuals: 666
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9575
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-30738244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738244
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738244
    reference: chr 0
allele count: 1
allele frequency: 1.194044107989349e-5
allele num: 83749
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1236+32A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3584T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1218+32A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1455A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.621+32A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1092+32A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1218+32A>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 307
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9573
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

X-30738689-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738689
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738689
    reference: chr 0
allele count: 1
allele frequency: 1.152551749573556e-5
allele num: 86764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3139A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1010T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-49T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
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genotype depth: GenotypeDepth
  all individuals: 1954
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genotype depth: GenotypeDepth
  all individuals: 1187
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2753
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genotype quality: GenotypeQuality
  all individuals: 100
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26480
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-30738690-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738690
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738690
    reference: chr 0
allele count: 73
allele frequency: 8.416246815084682e-4
allele num: 86737
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-48G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-48G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-48G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3138C>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-1009G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-48G>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-48G>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4327
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-30738703-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738703
    reference: chr 0
allele count: 1
allele frequency: 1.150522912663806e-5
allele num: 86917
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-996A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-35A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-35A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-35A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-35A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3125T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-35A>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-30738704-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738704
    reference: chr 0
allele count: 1
allele frequency: 1.150271464065519e-5
allele num: 86936
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-34G>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-995G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-34G>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-34G>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-34G>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-34G>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3124C>G
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26543
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-30738712-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738712
    reference: chr 0
allele count: 1
allele frequency: 1.147842056932966e-5
allele num: 87120
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3116T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-26A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-26A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-26A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-26A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-987A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-26A>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26560
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-30738717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738717
    reference: chr 0
allele count: 1
allele frequency: 1.146342022605865e-5
allele num: 87234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3111T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1219-21A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-982A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1093-21A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1219-21A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.622-21A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1237-21A>G
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

X-30738757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738757
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738757
    reference: chr 0
allele count: 5
allele frequency: 5.702489707006079e-5
allele num: 87681
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.641G>A
  hgvsp: ENSP00000401720.1:p.Arg214Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1238G>A
  hgvsp: ENSP00000368228.3:p.Arg413Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-942G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3071C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1238G>A
  hgvsp: ENSP00000368226.3:p.Arg413Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1256G>A
  hgvsp: ENSP00000368229.3:p.Arg419Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.23G>A
  hgvsp: ENSP00000368221.1:p.Arg8Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1112G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26622
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13710
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg413Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-30738788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738788
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738788
    reference: chr 0
allele count: 2
allele frequency: 2.279903788060144e-5
allele num: 87723
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+3040C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-911G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.672G>A
  hgvsp: ENST00000427190.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1287G>A
  hgvsp: ENST00000378946.3:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1269G>A
  hgvsp: ENST00000378945.3:c.1269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1269G>A
  hgvsp: ENST00000378943.3:c.1269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.54G>A
  hgvsp: ENST00000378938.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1143G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln423Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-30738855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738855
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.739G>A
  hgvsp: ENSP00000401720.1:p.Val247Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.121G>A
  hgvsp: ENSP00000368221.1:p.Val41Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2973C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1354G>A
  hgvsp: ENSP00000368229.3:p.Val452Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1336G>A
  hgvsp: ENSP00000368226.3:p.Val446Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-844G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1336G>A
  hgvsp: ENSP00000368228.3:p.Val446Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1210G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val446Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-30738877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738877
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738877
    reference: chr 0
allele count: 1
allele frequency: 1.139627114008296e-5
allele num: 87748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1213+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.742+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2951G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1339+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1357+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1339+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.124+19C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-822C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

X-30738878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738878
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738878
    reference: chr 0
allele count: 4519
allele frequency: 5.150561900202877e-2
allele num: 87738
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.742+20T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.124+20T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-821T>C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1213+20T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1339+20T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1357+20T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2950A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1339+20T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 6.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 9.75e1
  variant carriers: 2665
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 4.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 4881
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28689
  bin: 9.75e1
  variant carriers: 4362
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 93
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-30738895-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738895
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1339+37A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1339+37A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-804A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2933T>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1357+37A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1213+37A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.742+37A>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

X-30738896-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738896
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1339+38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1357+38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-803T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2932A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1339+38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.742+38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.124+38T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1213+38T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

X-30738919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738919
    reference: chr 0
allele count: 1
allele frequency: 1.140758147865071e-5
allele num: 87661
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.125-50C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1340-50C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.743-50C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2909G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1340-50C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-780C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1214-50C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1358-50C>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
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genotype depth: GenotypeDepth
  all individuals: 384
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
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genotype depth: GenotypeDepth
  all individuals: 784
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genotype depth: GenotypeDepth
  all individuals: 29052
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genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 513
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1095
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genotype depth: GenotypeDepth
  all individuals: 654
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genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 8772
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 2543
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 463
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genotype quality: GenotypeQuality
  all individuals: 85
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-30738920-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738920
    reference: chr 0
allele count: 1
allele frequency: 1.140849248180345e-5
allele num: 87654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1340-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2908A>G
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.743-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1340-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-779T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1214-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.125-49T>C
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1358-49T>C
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 513
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 283
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1436
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genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
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genotype quality: GenotypeQuality
  all individuals: 7125
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 254
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genotype quality: GenotypeQuality
  all individuals: 2540
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genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 50
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genotype quality: GenotypeQuality
  all individuals: 73
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

X-30738951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738951
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738951
    reference: chr 0
allele count: 1
allele frequency: 1.145475372279496e-5
allele num: 87300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1340-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.125-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1340-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1358-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1214-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.743-18G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-748G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2877C>T
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 784
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 195
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

X-30738960-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738960
    reference: chr 0
allele count: 1
allele frequency: 1.147578609134726e-5
allele num: 87140
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1340-9T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-739T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.743-9T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1214-9T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1358-9T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2868A>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.125-9T>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1340-9T>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-30738980-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030738980
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030738980
    reference: chr 0
allele count: 1
allele frequency: 1.152445489328355e-5
allele num: 86772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1369A>T
  hgvsp: ENSP00000368229.3:p.Met457Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1351A>T
  hgvsp: ENSP00000368226.3:p.Met451Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.136A>T
  hgvsp: ENSP00000368221.1:p.Met46Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1351A>T
  hgvsp: ENSP00000368228.3:p.Met451Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.754A>T
  hgvsp: ENSP00000401720.1:p.Met252Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1225A>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-719A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2848T>A
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7313
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met451Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

X-30739006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739006
    reference: chr 0
allele count: 3
allele frequency: 3.50050173858253e-5
allele num: 85702
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2822C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1377G>A
  hgvsp: ENST00000378945.3:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1395G>A
  hgvsp: ENST00000378946.3:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1251G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.780G>A
  hgvsp: ENST00000427190.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-693G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1377G>A
  hgvsp: ENST00000378943.3:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.162G>A
  hgvsp: ENST00000378938.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21460
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala459Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-30739010-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739010
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739010
    reference: chr 0
allele count: 1
allele frequency: 1.167569587147394e-5
allele num: 85648
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1381A>T
  hgvsp: ENSP00000368226.3:p.Met461Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.166A>T
  hgvsp: ENSP00000368221.1:p.Met56Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1381A>T
  hgvsp: ENSP00000368228.3:p.Met461Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-689A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2818T>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.784A>T
  hgvsp: ENSP00000401720.1:p.Met262Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1399A>T
  hgvsp: ENSP00000368229.3:p.Met467Leu
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1255A>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met461Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-30739014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739014
    reference: chr 0
allele count: 1
allele frequency: 1.1735298604673e-5
allele num: 85213
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.170C>T
  hgvsp: ENSP00000368221.1:p.Ala57Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-685C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.788C>T
  hgvsp: ENSP00000401720.1:p.Ala263Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1385C>T
  hgvsp: ENSP00000368228.3:p.Ala462Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1403C>T
  hgvsp: ENSP00000368229.3:p.Ala468Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2814G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1385C>T
  hgvsp: ENSP00000368226.3:p.Ala462Val
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1259C>T
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala462Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-30739021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739021
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739021
    reference: chr 0
allele count: 1
allele frequency: 1.177551164598102e-5
allele num: 84922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.177G>A
  hgvsp: ENST00000378938.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2807C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1410G>A
  hgvsp: ENST00000378946.3:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.795G>A
  hgvsp: ENST00000427190.1:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1266G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-678G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1392G>A
  hgvsp: ENST00000378943.3:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1392G>A
  hgvsp: ENST00000378945.3:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly464Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-30739034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739034
    reference: chr 0
allele count: 1
allele frequency: 1.184792009762686e-5
allele num: 84403
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1405G>A
  hgvsp: ENSP00000368228.3:p.Val469Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.190G>A
  hgvsp: ENSP00000368221.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.808G>A
  hgvsp: ENSP00000401720.1:p.Val270Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1279G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-665G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2794C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1423G>A
  hgvsp: ENSP00000368229.3:p.Val475Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1405G>A
  hgvsp: ENSP00000368226.3:p.Val469Ile
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val469Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-30739036-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739036
    reference: chr 0
allele count: 1
allele frequency: 1.186901356628251e-5
allele num: 84253
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.810C>A
  hgvsp: ENST00000427190.1:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1407C>A
  hgvsp: ENST00000378945.3:c.1407C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-663C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1425C>A
  hgvsp: ENST00000378946.3:c.1425C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.192C>A
  hgvsp: ENST00000378938.1:c.192C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1407C>A
  hgvsp: ENST00000378943.3:c.1407C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2792G>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1281C>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val469Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-30739052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739052
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739052
    reference: chr 0
allele count: 2
allele frequency: 2.389571908192647e-5
allele num: 83697
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1423G>A
  hgvsp: ENSP00000368226.3:p.Glu475Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1441G>A
  hgvsp: ENSP00000368229.3:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1423G>A
  hgvsp: ENSP00000368228.3:p.Glu475Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.208G>A
  hgvsp: ENSP00000368221.1:p.Glu70Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.826G>A
  hgvsp: ENSP00000401720.1:p.Glu276Lys
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2776C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-647G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1297G>A
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17236
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu475Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

X-30739057-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739057
    reference: chr 0
allele count: 1
allele frequency: 1.196744853997128e-5
allele num: 83560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1302C>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1428C>G
  hgvsp: ENST00000378943.3:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1428C>G
  hgvsp: ENST00000378945.3:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-642C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2771G>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1446C>G
  hgvsp: ENST00000378946.3:c.1446C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.831C>G
  hgvsp: ENST00000427190.1:c.831C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.213C>G
  hgvsp: ENST00000378938.1:c.213C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro476Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-30739073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739073
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1318G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1444G>A
  hgvsp: ENSP00000368228.3:p.Val482Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.229G>A
  hgvsp: ENSP00000368221.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2755C>T
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.847G>A
  hgvsp: ENSP00000401720.1:p.Val283Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1444G>A
  hgvsp: ENSP00000368226.3:p.Val482Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1462G>A
  hgvsp: ENSP00000368229.3:p.Val488Ile
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-626G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18044
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7935
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val482Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-30739075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739075
    reference: chr 0
allele count: 1
allele frequency: 1.212532738383936e-5
allele num: 82472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1320C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-624C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2753G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.849C>T
  hgvsp: ENST00000427190.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.231C>T
  hgvsp: ENST00000378938.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1446C>T
  hgvsp: ENST00000378945.3:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1446C>T
  hgvsp: ENST00000378943.3:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1464C>T
  hgvsp: ENST00000378946.3:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6830
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val482Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

X-30739086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739086
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739086
    reference: chr 0
allele count: 1
allele frequency: 1.223780502729031e-5
allele num: 81714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.860G>A
  hgvsp: ENSP00000401720.1:p.Arg287Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-613G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1457G>A
  hgvsp: ENSP00000368226.3:p.Arg486Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1457G>A
  hgvsp: ENSP00000368228.3:p.Arg486Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.242G>A
  hgvsp: ENSP00000368221.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1331G>A
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1475G>A
  hgvsp: ENSP00000368229.3:p.Arg492Gln
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2742C>T
  variant of: http://identifiers.org/hgnc/40255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg486Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-30739093-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739093
    reference: chr 0
allele count: 1
allele frequency: 1.232528902802771e-5
allele num: 81134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1482A>G
  hgvsp: ENST00000378946.3:c.1482A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2735T>C
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1338A>G
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1464A>G
  hgvsp: ENST00000378945.3:c.1464A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-606A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.867A>G
  hgvsp: ENST00000427190.1:c.867A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.249A>G
  hgvsp: ENST00000378938.1:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1464A>G
  hgvsp: ENST00000378943.3:c.1464A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4289
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6824
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu488Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

X-30739094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24030739094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24030739094
    reference: chr 0
allele count: 1
allele frequency: 1.233015215407758e-5
allele num: 81102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000418873
  ensembl transcript: ENST00000481024
  gene symbol: GK
  hgvsc: ENST00000481024.1:c.*1339C>T
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368221
  ensembl transcript: ENST00000378938
  gene symbol: GK
  hgvsc: ENST00000378938.1:c.250C>T
  hgvsp: ENSP00000368221.1:p.Pro84Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368229
  ensembl transcript: ENST00000378946
  gene symbol: GK
  hgvsc: ENST00000378946.3:c.1483C>T
  hgvsp: ENSP00000368229.3:p.Pro495Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368228
  ensembl transcript: ENST00000378945
  gene symbol: GK
  hgvsc: ENST00000378945.3:c.1465C>T
  hgvsp: ENSP00000368228.3:p.Pro489Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000401720
  ensembl transcript: ENST00000427190
  gene symbol: GK
  hgvsc: ENST00000427190.1:c.868C>T
  hgvsp: ENSP00000401720.1:p.Pro290Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243055
  ensembl transcript: ENST00000464659
  gene symbol: GK-AS1
  hgvsc: ENST00000464659.1:n.464+2734G>A
  variant of: http://identifiers.org/hgnc/40255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198814
  ensembl protein: ENSP00000368226
  ensembl transcript: ENST00000378943
  gene symbol: GK
  hgvsc: ENST00000378943.3:c.1465C>T
  hgvsp: ENSP00000368226.3:p.Pro489Ser
  variant of: http://identifiers.org/hgnc/4289
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241886
  ensembl transcript: ENST00000497961
  gene symbol: RP11-242C19.2
  hgvsc: ENST00000497961.1:n.212-605C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro489Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5657
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7079
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37681
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.76e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 1.532e1

FS
type: SiteQuality
SIO_000300: 4.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

DP
type: SiteQuality
SIO_000300: 1.286962e6

GenotypeQuality
all individuals: 26747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.393534002229654e-4
allele num: 7176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3939
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5759
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38353
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8607
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.306683e6

QD
type: SiteQuality
SIO_000300: 1.672e1

FS
type: SiteQuality
SIO_000300: 3.857e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.375e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 1015
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35122
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4249
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.897668240149916e-4
allele num: 42157
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.096852034660524e-4
allele num: 9117
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.556e0

VQSLOD
type: SiteQuality
SIO_000300: -1.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.457e1

QD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.428107e6

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7449
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.412229911029516e-4
allele num: 42486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9157
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7749
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4275
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 3.151e0

QD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.071e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
type: SiteQuality
SIO_000300: 1.435752e6

VQSLOD
type: SiteQuality
SIO_000300: -2.246e0

GenotypeQuality
all individuals: 604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44643
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.060220525869381e-4
allele num: 9432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8067
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.479e1

QD
type: SiteQuality
SIO_000300: 3.304e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 1.493885e6

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4244
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.650967506389193e-4
allele num: 8217
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4445
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45980
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.104e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.531223e6

VQSLOD
type: SiteQuality
SIO_000300: -8.399e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.24e-1

QD
type: SiteQuality
SIO_000300: 1.701e1

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4244
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8235
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9181
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.247696111485727e-4
allele num: 4449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.169103292698798e-5
allele num: 46102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6557
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.887e0

QD
type: SiteQuality
SIO_000300: 1.294e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.285e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 3.827e0

DP
type: SiteQuality
SIO_000300: 1.534201e6

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.172732210755024e-4
allele num: 9205
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6585
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.502887691349808e-4
allele num: 46577
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9757
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.503e1

DP
type: SiteQuality
SIO_000300: 1.548509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 4.782e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

FS
type: SiteQuality
SIO_000300: 1.2482e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.204093919325707e-4
allele num: 8305
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46921
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9233
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.590499e6

VQSLOD
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.104e1

QD
type: SiteQuality
SIO_000300: 3.24e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 27

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 28

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 34

GenotypeQuality
all individuals: 42662
bin: 6.25e1
variant carriers: 21

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 24

GenotypeQuality
all individuals: 4123
bin: 6.75e1
variant carriers: 23

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 43

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 28

Latino
type: Population
allele count: 6
allele frequency: 6.520321669202348e-4
allele num: 9202
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.008878127522195e-4
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.573867967678e-4
allele num: 6559
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 1.13709781625533e-2
allele num: 7739
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.015228426395939e-2
allele num: 591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 60
allele frequency: 1.472031403336605e-2
allele num: 4076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 176
allele frequency: 3.862190037305245e-3
allele num: 45570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.354e0

VQSLOD
type: SiteQuality
SIO_000300: -1.197e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.411e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.616527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

FS
type: SiteQuality
SIO_000300: 1.59167e2

MQ
type: SiteQuality
SIO_000300: 4.766e1

GenotypeQuality
all individuals: 1358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079447322970639e-4
allele num: 9264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9933
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 5.911e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.604623e6

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

QD
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.602e1

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 4
allele frequency: 4.022930705018606e-4
allele num: 9943
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.571853792118109e-4
allele num: 8399
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 4.815e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.15e-2

DP
type: SiteQuality
SIO_000300: 1.607615e6

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 1.108e0

MQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

QD
type: SiteQuality
SIO_000300: 1.762e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.108725907806503e-5
allele num: 47422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.586e1

FS
type: SiteQuality
SIO_000300: 1.663e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

VQSLOD
type: SiteQuality
SIO_000300: -1.103e0

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.115e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 1.60853e6

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9971
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.103137881719526e-5
allele num: 47548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8425
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.541e1

FS
type: SiteQuality
SIO_000300: 6.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.486e0

DP
type: SiteQuality
SIO_000300: 1.614876e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

GenotypeQuality
all individuals: 862
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4816
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 4589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9975
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077586206896552e-4
allele num: 9280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47553
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 4.507710557532621e-3
allele num: 8430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 4.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.727e-1

DP
type: SiteQuality
SIO_000300: 1.617269e6

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.015037593984962e-4
allele num: 9975
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077702338614075e-4
allele num: 9279
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47577
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.367e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 1.2796e1

DP
type: SiteQuality
SIO_000300: 1.616338e6

MQ
type: SiteQuality
SIO_000300: 5.049e1

QD
type: SiteQuality
SIO_000300: 1.734e1

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077702338614075e-4
allele num: 9279
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

DP
type: SiteQuality
SIO_000300: 1.615942e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.16e-1

QD
type: SiteQuality
SIO_000300: 3.99e0

MQ
type: SiteQuality
SIO_000300: 4.519e1

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8435
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.981e1

MQ
type: SiteQuality
SIO_000300: 5.273e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

DP
type: SiteQuality
SIO_000300: 1.607278e6

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514463122822959e-4
allele num: 6603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8413
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9859
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46985
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.58181e6

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 3.396e1

MQ
type: SiteQuality
SIO_000300: 5.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46365
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8345
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.529051987767584e-4
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9195
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.497083e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.509e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.074e1

GenotypeQuality
all individuals: 288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.534683855125844e-4
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46021
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9713
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.85e-2

FS
type: SiteQuality
SIO_000300: 1.839e0

MQ
type: SiteQuality
SIO_000300: 5.525e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 3.078e1

DP
type: SiteQuality
SIO_000300: 1.446484e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.809e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

GenotypeQuality
all individuals: 609
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4524
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4437
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.538698261270965e-4
allele num: 6499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9155
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.489e1

VQSLOD
type: SiteQuality
SIO_000300: -1.03e0

QD
type: SiteQuality
SIO_000300: 1.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.427367e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 1012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4788
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 23451
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45795
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4437
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.232096103496073e-3
allele num: 6493
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9147
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.446e1

FS
type: SiteQuality
SIO_000300: 6.374e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

QD
type: SiteQuality
SIO_000300: 2.108e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 1.418169e6

GenotypeQuality
all individuals: 1170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9655
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189189780862103e-5
allele num: 45679
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.344e1

QD
type: SiteQuality
SIO_000300: 1.104e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.797e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.31e-1

DP
type: SiteQuality
SIO_000300: 1.407889e6

GenotypeQuality
all individuals: 9623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8267
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6473
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.384426517011575e-5
allele num: 45616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.581e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.91e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.623e0

MQ
type: SiteQuality
SIO_000300: 5.206e1

FS
type: SiteQuality
SIO_000300: 1.437e0

DP
type: SiteQuality
SIO_000300: 1.404755e6

GenotypeQuality
all individuals: 3004
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4375
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6359
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45053
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8235
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.05318588730911e-4
allele num: 9495
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.900844e6

MQ
type: SiteQuality
SIO_000300: 5.628e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.906e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.42820768294033e-5
allele num: 45165
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8947
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6381
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.526e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.738e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e0

FS
type: SiteQuality
SIO_000300: 4.557e0

QD
type: SiteQuality
SIO_000300: 1.987e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 1.920348e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
all individuals: 2147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9617
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 3906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1966
bin: 2.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.282583884957772e-4
allele num: 4381
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8947
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 7.524787535410764e-4
allele num: 45184
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 2.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.925381e6

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

MQ
type: SiteQuality
SIO_000300: 5.77e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 1.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.67e-2

GenotypeQuality
all individuals: 3621
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22499
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3162
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9643
bin: 9.75e1
variant carriers: 82

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1215
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 5.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 97
allele frequency: 2.145115991065703e-3
allele num: 45219
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.569339730408956e-4
allele num: 4377
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.151591553734636e-4
allele num: 9519
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.821229050279329e-4
allele num: 8950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.63901018922853e-4
allele num: 8244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.801e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 1.942559e6

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.029e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

GenotypeQuality
all individuals: 2143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4682
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 846
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1207
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 67
allele frequency: 7.467677218011591e-3
allele num: 8972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4389
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8255
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6399
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

QD
type: SiteQuality
SIO_000300: 1.883e1

DP
type: SiteQuality
SIO_000300: 1.960374e6

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45667
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.044495508669313e-4
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6443
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

DP
type: SiteQuality
SIO_000300: 1.998172e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.258e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 1083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.157311127410795e-5
allele num: 46354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4445
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.041284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.251e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

QD
type: SiteQuality
SIO_000300: 1.781e1

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9582
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4467
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.145409074669524e-4
allele num: 8397
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9173
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.268670095831644e-5
allele num: 46853
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.067672e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.771e1

FS
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
all individuals: 1206
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variant carriers: 0

GenotypeQuality
all individuals: 36117
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variant carriers: 0

GenotypeQuality
all individuals: 9577
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101370093300832e-5
allele num: 47588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.16e-2

QD
type: SiteQuality
SIO_000300: 2.802e1

DP
type: SiteQuality
SIO_000300: 2.096758e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

MQ
type: SiteQuality
SIO_000300: 5.52e1

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2194
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47293
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8433
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.518602885345482e-4
allele num: 6585
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.079284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.356e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

QD
type: SiteQuality
SIO_000300: 3.328e1

GenotypeQuality
all individuals: 595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
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variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33190
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.085658451851048e-4
allele num: 9211
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47131
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8413
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.132e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.58e0

MQ
type: SiteQuality
SIO_000300: 5.691e1

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 2.070182e6

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 802
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.283205551034394e-5
allele num: 46694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9159
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9795
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.809e0

QD
type: SiteQuality
SIO_000300: 2.648e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

DP
type: SiteQuality
SIO_000300: 2.035247e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
all individuals: 4782
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 1739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9153
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9793
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.142795920116568e-5
allele num: 46668
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.031298e6

VQSLOD
type: SiteQuality
SIO_000300: -2.098e0

FS
type: SiteQuality
SIO_000300: 1.1899e1

QD
type: SiteQuality
SIO_000300: 1.582e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.825e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4155
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.111358079573238e-4
allele num: 8998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6387
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4399
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.255e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 2.435e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 1.898341e6

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 8651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1201
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GenotypeQuality
all individuals: 4155
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4399
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.195293291183702e-5
allele num: 45552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6387
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.379e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

FS
type: SiteQuality
SIO_000300: 2.435e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.898341e6

VQSLOD
type: SiteQuality
SIO_000300: -4.255e-1

GenotypeQuality
all individuals: 4753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8825
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
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GenotypeQuality
all individuals: 240
bin: 1.25e1
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GenotypeQuality
all individuals: 796
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GenotypeQuality
all individuals: 3110
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.25e1
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GenotypeQuality
all individuals: 2085
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.197995428169509e-5
allele num: 45496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4391
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.174e1

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

DP
type: SiteQuality
SIO_000300: 1.891777e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 4.544e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102916745526045e-5
allele num: 47553
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.263894e6

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.58e1

FS
type: SiteQuality
SIO_000300: 1.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

VQSLOD
type: SiteQuality
SIO_000300: -7.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 46

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076310407921645e-4
allele num: 9291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 72
allele frequency: 7.149240393208221e-3
allele num: 10071
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.753e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 2.266534e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.067e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 5.344e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47621
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.226692836113837e-4
allele num: 8152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10085
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.905e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.775e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

FS
type: SiteQuality
SIO_000300: 2.621e0

MQ
type: SiteQuality
SIO_000300: 5.457e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.469e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e0

DP
type: SiteQuality
SIO_000300: 2.305168e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075037626316921e-4
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8159
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 4.796e0

MQ
type: SiteQuality
SIO_000300: 5.344e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.444e0

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 2.308077e6

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 3612
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8205
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10097
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074806534823732e-4
allele num: 9304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

QD
type: SiteQuality
SIO_000300: 3.011e1

DP
type: SiteQuality
SIO_000300: 2.322751e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.647e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.503e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8233
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47803
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

DP
type: SiteQuality
SIO_000300: 2.329678e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.117e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.414e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.335590889199158e-5
allele num: 47987
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.978e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.096e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47996
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
type: Population
allele count: 2
allele frequency: 1.975503753457131e-4
allele num: 10124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

FS
type: SiteQuality
SIO_000300: 7.638e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.091e-1

DP
type: SiteQuality
SIO_000300: 2.344831e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083506958913243e-5
allele num: 47996
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
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VQSLOD
type: SiteQuality
SIO_000300: -8.054e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.479e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.053e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 2.345633e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.0654e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4018
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variant carriers: 0

GenotypeQuality
all individuals: 13581
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47994
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.579778830963665e-3
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 2.345176e6

QD
type: SiteQuality
SIO_000300: 2.972e1

MQ
type: SiteQuality
SIO_000300: 5.405e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 5.774e0

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

GenotypeQuality
all individuals: 12760
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 2467
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variant carriers: 9

GenotypeQuality
all individuals: 11
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variant carriers: 2

African
type: Population
allele count: 82
allele frequency: 9.644789461303222e-3
allele num: 8502
num of homozygotes: 1

Latino
type: Population
allele count: 268
allele frequency: 2.874919545161982e-2
allele num: 9322
num of homozygotes: 4

South Asian
type: Population
allele count: 219
allele frequency: 2.163176610035559e-2
allele num: 10124
num of homozygotes: 2

East Asian
type: Population
allele count: 2
allele frequency: 3.01295570955107e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3607
allele frequency: 7.51630582008377e-2
allele num: 47989
num of homozygotes: 80

Other
type: Population
allele count: 34
allele frequency: 5.371248025276461e-2
allele num: 633
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 307
allele frequency: 6.777041942604857e-2
allele num: 4530
num of homozygotes: 4

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.695e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

DP
type: SiteQuality
SIO_000300: 2.706304e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.524e1

QD
type: SiteQuality
SIO_000300: 2.094e1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3796
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083506958913243e-5
allele num: 47996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

DP
type: SiteQuality
SIO_000300: 2.565596e6

MQ
type: SiteQuality
SIO_000300: 5.562e1

QD
type: SiteQuality
SIO_000300: 1.297e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.334e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 3548
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4902
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GenotypeQuality
all individuals: 1796
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.565546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.62e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

MQ
type: SiteQuality
SIO_000300: 5.476e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 3.434e0

VQSLOD
type: SiteQuality
SIO_000300: -1.329e0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 611
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 1315
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GenotypeQuality
all individuals: 36666
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2492
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variant carriers: 0

GenotypeQuality
all individuals: 7126
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0860713019171e-5
allele num: 47937
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1355e1

QD
type: SiteQuality
SIO_000300: 1.354e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.94742e6

VQSLOD
type: SiteQuality
SIO_000300: -3.522e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.62e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 1314
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GenotypeQuality
all individuals: 610
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GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509206157561123e-4
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.520000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.9458e6

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

QD
type: SiteQuality
SIO_000300: 3.555e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 324
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 227
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8160
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variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09564524917222e-5
allele num: 47718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 1.906842e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQ
type: SiteQuality
SIO_000300: 5.658e1

FS
type: SiteQuality
SIO_000300: 9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.633e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 603
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1201
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GenotypeQuality
all individuals: 585
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GenotypeQuality
all individuals: 34128
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099693444757066e-5
allele num: 47626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 1.891253e6

VQSLOD
type: SiteQuality
SIO_000300: -2.507e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.77e-2

MQ
type: SiteQuality
SIO_000300: 5.463e1

FS
type: SiteQuality
SIO_000300: 1.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.419e0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.658e1

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2248
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variant carriers: 0

GenotypeQuality
all individuals: 1997
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variant carriers: 0

GenotypeQuality
all individuals: 33555
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 318
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GenotypeQuality
all individuals: 663
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GenotypeQuality
all individuals: 365
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GenotypeQuality
all individuals: 782
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GenotypeQuality
all individuals: 564
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GenotypeQuality
all individuals: 402
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GenotypeQuality
all individuals: 694
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GenotypeQuality
all individuals: 7086
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8453
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.109615628032573e-5
allele num: 47402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.857315e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 3.363e0

QD
type: SiteQuality
SIO_000300: 1.466e1

MQ
type: SiteQuality
SIO_000300: 5.752e1

VQSLOD
type: SiteQuality
SIO_000300: -1.486e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4401
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.531862745098039e-4
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.277800355057429e-5
allele num: 46753
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.802e1

VQSLOD
type: SiteQuality
SIO_000300: -1.723e0

FS
type: SiteQuality
SIO_000300: 3.042e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

DP
type: SiteQuality
SIO_000300: 1.78139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4393
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.643e0

QD
type: SiteQuality
SIO_000300: 1.379e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 5.549e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.41e-2

DP
type: SiteQuality
SIO_000300: 1.775251e6

GenotypeQuality
all individuals: 1604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46459
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9127
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.606e0

DP
type: SiteQuality
SIO_000300: 1.752989e6

QD
type: SiteQuality
SIO_000300: 2.822e1

FS
type: SiteQuality
SIO_000300: 2.522e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.893e-1

MQ
type: SiteQuality
SIO_000300: 5.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46317
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.024170421958214e-4
allele num: 9764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6489
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.942e0

MQ
type: SiteQuality
SIO_000300: 5.547e1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

DP
type: SiteQuality
SIO_000300: 1.719873e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.099e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.256e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.173062714589943e-5
allele num: 46018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.509e0

MQ
type: SiteQuality
SIO_000300: 5.165e1

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 1.695537e6

VQSLOD
type: SiteQuality
SIO_000300: -1.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.591e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6469
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9029
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45921
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.034019232757729e-4
allele num: 9671
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8287
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4275
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.263e0

DP
type: SiteQuality
SIO_000300: 1.694527e6

MQ
type: SiteQuality
SIO_000300: 5.064e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

QD
type: SiteQuality
SIO_000300: 9.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4233
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.230151650312221e-4
allele num: 8968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

DP
type: SiteQuality
SIO_000300: 1.68847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.598e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 2.818e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

MQ
type: SiteQuality
SIO_000300: 5.35e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6837
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.194233554219511e-5
allele num: 45574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4233
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.972e1

FS
type: SiteQuality
SIO_000300: 4.688e0

DP
type: SiteQuality
SIO_000300: 1.687759e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1183
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8859
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45073
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

VQSLOD
type: SiteQuality
SIO_000300: -2.889e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.72e-1

DP
type: SiteQuality
SIO_000300: 1.674885e6

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30918
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9359
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8839
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8201
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.573811772112055e-4
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44975
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4159
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQ
type: SiteQuality
SIO_000300: 4.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 1.668813e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

QD
type: SiteQuality
SIO_000300: 2.246e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.091e0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4115
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8769
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.585037248375337e-4
allele num: 6309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 7.82e-1

MQ
type: SiteQuality
SIO_000300: 5.069e1

QD
type: SiteQuality
SIO_000300: 3.479e1

VQSLOD
type: SiteQuality
SIO_000300: -3.474e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

DP
type: SiteQuality
SIO_000300: 1.655931e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 692
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.261164499717354e-5
allele num: 44225
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8111
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9177
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4063
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.95e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.557e1

DP
type: SiteQuality
SIO_000300: 1.641027e6

QD
type: SiteQuality
SIO_000300: 2.695e1