19-52580196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580196
    reference: chr 19
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18632C>T
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.354C>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.142+15C>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.142+15C>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7844C>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.142+15C>T
  variant of: http://identifiers.org/hgnc/27611
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-52580203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580203
    reference: chr 19
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.347T>C
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18625T>C
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.142+8T>C
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7837T>C
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.142+8T>C
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.142+8T>C
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9508
  bin: 9.75e1
  variant carriers: 1
hgvs: c.142+8T>C
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-52580217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580217
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580217
    reference: chr 19
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18611T>C
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.333T>C
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.136T>C
  hgvsp: ENSP00000374185.4:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.136T>C
  hgvsp: ENSP00000470746.1:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.136T>C
  hgvsp: ENSP00000470100.1:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7823T>C
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9510
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 4661
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 3405
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe46Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-52580220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580220
    reference: chr 19
allele count: 2
allele frequency: 1.651773178507128e-5
allele num: 121082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.133G>A
  hgvsp: ENSP00000470100.1:p.Gly45Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.330G>A
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.133G>A
  hgvsp: ENSP00000374185.4:p.Gly45Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7820G>A
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.133G>A
  hgvsp: ENSP00000470746.1:p.Gly45Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18608G>A
  variant of: http://identifiers.org/hgnc/20810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9511
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly45Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

19-52580221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580221
    reference: chr 19
allele count: 7
allele frequency: 5.779296907250541e-5
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.132C>T
  hgvsp: ENST00000594295.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.329C>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.132C>T
  hgvsp: ENST00000594440.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.132C>T
  hgvsp: ENST00000389534.4:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18607C>T
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7819C>T
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9513
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu44Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-52580225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580225
    reference: chr 19
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.128A>G
  hgvsp: ENSP00000470746.1:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.128A>G
  hgvsp: ENSP00000374185.4:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7815A>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.325A>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.128A>G
  hgvsp: ENSP00000470100.1:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18603A>G
  variant of: http://identifiers.org/hgnc/20810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn43Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-52580233-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580233
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580233
    reference: chr 19
allele count: 3
allele frequency: 2.474839135456195e-5
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.120C>G
  hgvsp: ENSP00000470100.1:p.Asn40Lys
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.120C>G
  hgvsp: ENSP00000374185.4:p.Asn40Lys
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7807C>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18595C>G
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.120C>G
  hgvsp: ENSP00000470746.1:p.Asn40Lys
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.317C>G
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9511
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asn40Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-52580242-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580242
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580242
    reference: chr 19
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.308G>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7798G>T
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18586G>T
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.111G>T
  hgvsp: ENSP00000470746.1:p.Met37Ile
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.111G>T
  hgvsp: ENSP00000470100.1:p.Met37Ile
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.111G>T
  hgvsp: ENSP00000374185.4:p.Met37Ile
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met37Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-52580247-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580247
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580247
    reference: chr 19
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7793G>A
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.106G>A
  hgvsp: ENSP00000470100.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18581G>A
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.106G>A
  hgvsp: ENSP00000470746.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.303G>A
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.106G>A
  hgvsp: ENSP00000374185.4:p.Val36Met
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7813
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val36Met
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-52580249-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580249
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580250
    reference: chr 19
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18578dupG
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.103dupG
  hgvsp: ENSP00000470100.1:p.Asp35GlyfsTer19
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.103dupG
  hgvsp: ENSP00000470746.1:p.Asp35GlyfsTer19
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.103dupG
  hgvsp: ENSP00000374185.4:p.Asp35GlyfsTer19
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.300dupG
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7790dupG
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp35GlyfsTer19
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

19-52580261-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580261
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580260
    reference: chr 19
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7778delG
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.91delG
  hgvsp: ENSP00000470746.1:p.Ala31LeufsTer6
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.91delG
  hgvsp: ENSP00000470100.1:p.Ala31LeufsTer6
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18566delG
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.288delG
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.91delG
  hgvsp: ENSP00000374185.4:p.Ala31LeufsTer6
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9509
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala31LeufsTer6
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: GC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-52580289-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580289
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580289
    reference: chr 19
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.64T>G
  hgvsp: ENSP00000470100.1:p.Trp22Gly
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.261T>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.64T>G
  hgvsp: ENSP00000470746.1:p.Trp22Gly
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7751T>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.64T>G
  hgvsp: ENSP00000374185.4:p.Trp22Gly
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18539T>G
  variant of: http://identifiers.org/hgnc/20810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7780
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp22Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-52580310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580310
    reference: chr 19
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.43G>A
  hgvsp: ENSP00000374185.4:p.Val15Ile
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.43G>A
  hgvsp: ENSP00000470746.1:p.Val15Ile
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18518G>A
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.43G>A
  hgvsp: ENSP00000470100.1:p.Val15Ile
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7730G>A
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.240G>A
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9421
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val15Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-52580322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52580322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52580322
    reference: chr 19
allele count: 3
allele frequency: 2.493475406020912e-5
allele num: 120314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000415453
  ensembl transcript: ENST00000426391
  gene symbol: ZNF841
  hgvsc: ENST00000426391.2:c.-78+7718A>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000374185
  ensembl transcript: ENST00000389534
  gene symbol: ZNF841
  hgvsc: ENST00000389534.4:c.31A>G
  hgvsp: ENSP00000374185.4:p.Arg11Gly
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256087
  ensembl transcript: ENST00000598446
  gene symbol: ZNF432
  hgvsc: ENST00000598446.1:n.164+18506A>G
  variant of: http://identifiers.org/hgnc/20810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470746
  ensembl transcript: ENST00000594295
  gene symbol: ZNF841
  hgvsc: ENST00000594295.1:c.31A>G
  hgvsp: ENSP00000470746.1:p.Arg11Gly
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197608
  ensembl transcript: ENST00000599430
  gene symbol: ZNF841
  hgvsc: ENST00000599430.1:n.228A>G
  variant of: http://identifiers.org/hgnc/27611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197608
  ensembl protein: ENSP00000470100
  ensembl transcript: ENST00000594440
  gene symbol: ZNF841
  hgvsc: ENST00000594440.1:c.31A>G
  hgvsp: ENSP00000470100.1:p.Arg11Gly
  variant of: http://identifiers.org/hgnc/27611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg11Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-52618127-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52618127
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52618127
    reference: chr 19
allele count: 5
allele frequency: 4.286179642361171e-5
allele num: 116654
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204611
  ensembl protein: ENSP00000471000
  ensembl transcript: ENST00000600228
  gene symbol: ZNF616
  hgvsc: ENST00000600228.1:c.2290C>G
  hgvsp: ENSP00000471000.1:p.Arg764Gly
  variant of: http://identifiers.org/hgnc/28062
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204611
  ensembl protein: ENSP00000328722
  ensembl transcript: ENST00000330123
  gene symbol: ZNF616
  hgvsc: ENST00000330123.5:c.*2163C>G
  variant of: http://identifiers.org/hgnc/28062
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22306
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Arg764Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 6.118266083391966e-5
  allele num: 65378
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

X-106960093-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24106960093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24106960093
    reference: chr 0
allele count: 1
allele frequency: 1.208313194780087e-5
allele num: 82760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361474
  ensembl transcript: ENST00000372397
  gene symbol: TSC22D3
  hgvsc: ENST00000372397.2:c.-52A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.117-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422060
  ensembl transcript: ENST00000503515
  gene symbol: TSC22D3
  hgvsc: ENST00000503515.1:c.-52A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361457
  ensembl transcript: ENST00000372382
  gene symbol: TSC22D3
  hgvsc: ENST00000372382.4:c.51-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.321-913A>G
  variant of: http://identifiers.org/hgnc/3051
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13068
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-106965045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24106965045
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24106965045
    reference: chr 0
allele count: 2
allele frequency: 2.428363283147159e-4
allele num: 8236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.117-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361457
  ensembl transcript: ENST00000372382
  gene symbol: TSC22D3
  hgvsc: ENST00000372382.4:c.50+44G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.321-5865G>A
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-106965065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24106965065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24106965065
    reference: chr 0
allele count: 1
allele frequency: 1.164551065564225e-4
allele num: 8587
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361457
  ensembl transcript: ENST00000372382
  gene symbol: TSC22D3
  hgvsc: ENST00000372382.4:c.50+24G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.117-5885G>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.321-5885G>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

X-106965114-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24106965114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24106965114
    reference: chr 0
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.117-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361457
  ensembl transcript: ENST00000372382
  gene symbol: TSC22D3
  hgvsc: ENST00000372382.4:c.25T>C
  hgvsp: ENSP00000361457.4:p.Ser9Pro
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.321-5934T>C
  variant of: http://identifiers.org/hgnc/3051
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser9Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-107018279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018279
    reference: chr 0
allele count: 3
allele frequency: 3.615024039909866e-5
allele num: 82987
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+51C>T
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-107018280-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018280
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018279
    reference: chr 0
allele count: 1
allele frequency: 1.205167759352102e-5
allele num: 82976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+49delC
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: AG
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107018287-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018287
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018287
    reference: chr 0
allele count: 572
allele frequency: 7.131991720904716e-3
allele num: 80202
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+43A>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 27589
  bin: 2.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.25e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-107018291-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018291
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018291
    reference: chr 0
allele count: 1
allele frequency: 1.205182283820428e-5
allele num: 82975
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+39T>C
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+39T>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7791
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-107018297-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018297
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018297
    reference: chr 0
allele count: 1
allele frequency: 1.202284340246468e-5
allele num: 83175
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+33C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+33C>G
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-107018310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018310
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018310
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+20G>A
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-107018319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018319
    reference: chr 0
allele count: 2
allele frequency: 2.371522754760832e-5
allele num: 84334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+11C>T
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-107018326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018326
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018326
    reference: chr 0
allele count: 1
allele frequency: 1.177260044971334e-5
allele num: 84943
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.320+4G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.116+4G>A
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
hgvs: c.320+4G>A
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-107018344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018344
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018344
    reference: chr 0
allele count: 4
allele frequency: 4.646840148698885e-5
allele num: 86080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.306G>A
  hgvsp: ENST00000480691.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.306G>A
  hgvsp: ENST00000502650.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.306G>A
  hgvsp: ENST00000514897.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.306G>A
  hgvsp: ENST00000510887.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.306G>A
  hgvsp: ENST00000372383.4:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.306G>A
  hgvsp: ENST00000372384.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.306G>A
  hgvsp: ENST00000315660.4:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.102G>A
  hgvsp: ENST00000514426.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.306G>A
  hgvsp: ENST00000506081.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu102Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-107018346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018346
    reference: chr 0
allele count: 1
allele frequency: 1.158278797706608e-5
allele num: 86335
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.304C>T
  hgvsp: ENST00000372384.2:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.304C>T
  hgvsp: ENST00000502650.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.304C>T
  hgvsp: ENST00000315660.4:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.304C>T
  hgvsp: ENST00000480691.2:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.100C>T
  hgvsp: ENST00000514426.1:c.100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.304C>T
  hgvsp: ENST00000510887.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.304C>T
  hgvsp: ENST00000372383.4:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.304C>T
  hgvsp: ENST00000506081.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.304C>T
  hgvsp: ENST00000514897.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu102Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107018376-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018376
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018376
    reference: chr 0
allele count: 1
allele frequency: 1.141656772307973e-5
allele num: 87592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.274C>G
  hgvsp: ENSP00000427199.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.274C>G
  hgvsp: ENSP00000427075.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.274C>G
  hgvsp: ENSP00000361458.4:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.274C>G
  hgvsp: ENSP00000422636.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.274C>G
  hgvsp: ENSP00000361459.2:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.274C>G
  hgvsp: ENSP00000425155.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.274C>G
  hgvsp: ENSP00000427427.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.274C>G
  hgvsp: ENSP00000314655.4:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.274C>G
  hgvsp: ENSP00000424653.1:p.Arg92Gly
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.70C>G
  hgvsp: ENSP00000421016.1:p.Arg24Gly
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg92Gly
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-107018385-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018385
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018385
    reference: chr 0
allele count: 24
allele frequency: 2.737101409607226e-4
allele num: 87684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.265A>G
  hgvsp: ENSP00000427199.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.61A>G
  hgvsp: ENSP00000421016.1:p.Ile21Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.265A>G
  hgvsp: ENSP00000425155.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.265A>G
  hgvsp: ENSP00000314655.4:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.265A>G
  hgvsp: ENSP00000427075.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.265A>G
  hgvsp: ENSP00000361459.2:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.265A>G
  hgvsp: ENSP00000361458.4:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.265A>G
  hgvsp: ENSP00000422636.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.265A>G
  hgvsp: ENSP00000427427.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.265A>G
  hgvsp: ENSP00000424653.1:p.Ile89Val
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.75e1
  variant carriers: 24
hgvs: p.Ile89Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-107018386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018386
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018386
    reference: chr 0
allele count: 1
allele frequency: 1.14038088721633e-5
allele num: 87690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.264C>T
  hgvsp: ENST00000372384.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.264C>T
  hgvsp: ENST00000510887.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.60C>T
  hgvsp: ENST00000514426.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.264C>T
  hgvsp: ENST00000506081.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.264C>T
  hgvsp: ENST00000480691.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.264C>T
  hgvsp: ENST00000514897.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.264C>T
  hgvsp: ENST00000506724.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.264C>T
  hgvsp: ENST00000315660.4:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.264C>T
  hgvsp: ENST00000372383.4:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.264C>T
  hgvsp: ENST00000502650.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly88Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

X-107018389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018389
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018389
    reference: chr 0
allele count: 8
allele frequency: 9.121382801632728e-5
allele num: 87706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.57G>A
  hgvsp: ENST00000514426.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.261G>A
  hgvsp: ENST00000372383.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.261G>A
  hgvsp: ENST00000502650.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.261G>A
  hgvsp: ENST00000514897.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.261G>A
  hgvsp: ENST00000315660.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.261G>A
  hgvsp: ENST00000510887.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.261G>A
  hgvsp: ENST00000480691.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.261G>A
  hgvsp: ENST00000372384.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.261G>A
  hgvsp: ENST00000506081.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.261G>A
  hgvsp: ENST00000506724.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47692
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu87Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107018392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018392
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018392
    reference: chr 0
allele count: 2
allele frequency: 2.279903788060144e-5
allele num: 87723
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.258C>T
  hgvsp: ENST00000510887.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.258C>T
  hgvsp: ENST00000514897.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.54C>T
  hgvsp: ENST00000514426.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.258C>T
  hgvsp: ENST00000502650.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.258C>T
  hgvsp: ENST00000315660.4:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.258C>T
  hgvsp: ENST00000372383.4:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.258C>T
  hgvsp: ENST00000506724.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.258C>T
  hgvsp: ENST00000480691.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.258C>T
  hgvsp: ENST00000372384.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.258C>T
  hgvsp: ENST00000506081.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn86Asn
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

X-107018412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018412
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018412
    reference: chr 0
allele count: 3
allele frequency: 3.418959268798577e-5
allele num: 87746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.238G>A
  hgvsp: ENSP00000422636.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.238G>A
  hgvsp: ENSP00000361459.2:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.238G>A
  hgvsp: ENSP00000425155.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.34G>A
  hgvsp: ENSP00000421016.1:p.Asp12Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.238G>A
  hgvsp: ENSP00000427199.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.238G>A
  hgvsp: ENSP00000427075.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.238G>A
  hgvsp: ENSP00000314655.4:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.238G>A
  hgvsp: ENSP00000424653.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.238G>A
  hgvsp: ENSP00000361458.4:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.238G>A
  hgvsp: ENSP00000425158.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.238G>A
  hgvsp: ENSP00000427427.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp80Asn
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

X-107018413-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018413
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018413
    reference: chr 0
allele count: 1
allele frequency: 1.139653089599526e-5
allele num: 87746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.237G>A
  hgvsp: ENST00000510887.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.237G>A
  hgvsp: ENST00000505965.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.237G>A
  hgvsp: ENST00000502650.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.237G>A
  hgvsp: ENST00000506081.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.237G>A
  hgvsp: ENST00000315660.4:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.237G>A
  hgvsp: ENST00000506724.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.237G>A
  hgvsp: ENST00000480691.2:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.33G>A
  hgvsp: ENST00000514426.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.237G>A
  hgvsp: ENST00000372384.2:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.237G>A
  hgvsp: ENST00000514897.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.237G>A
  hgvsp: ENST00000372383.4:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg79Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-107018423-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018423
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018423
    reference: chr 0
allele count: 1
allele frequency: 1.139653089599526e-5
allele num: 87746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.23C>G
  hgvsp: ENSP00000421016.1:p.Pro8Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.227C>G
  hgvsp: ENSP00000427427.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.227C>G
  hgvsp: ENSP00000427199.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.227C>G
  hgvsp: ENSP00000425158.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.227C>G
  hgvsp: ENSP00000361459.2:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.227C>G
  hgvsp: ENSP00000314655.4:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.227C>G
  hgvsp: ENSP00000424653.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.227C>G
  hgvsp: ENSP00000361458.4:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.227C>G
  hgvsp: ENSP00000422636.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.227C>G
  hgvsp: ENSP00000425155.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.227C>G
  hgvsp: ENSP00000427075.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro76Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

X-107018430-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018430
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018430
    reference: chr 0
allele count: 2
allele frequency: 2.279332155678386e-5
allele num: 87745
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.220C>A
  hgvsp: ENSP00000427427.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.220C>A
  hgvsp: ENSP00000425158.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.220C>A
  hgvsp: ENSP00000424653.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.220C>A
  hgvsp: ENSP00000361459.2:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.220C>A
  hgvsp: ENSP00000361458.4:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.220C>A
  hgvsp: ENSP00000427075.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.220C>A
  hgvsp: ENSP00000422636.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.220C>A
  hgvsp: ENSP00000314655.4:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.220C>A
  hgvsp: ENSP00000425155.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.16C>A
  hgvsp: ENSP00000421016.1:p.Leu6Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.220C>A
  hgvsp: ENSP00000427199.1:p.Leu74Ile
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu74Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

X-107018431-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018431
    reference: chr 0
allele count: 1
allele frequency: 1.139679066374909e-5
allele num: 87744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.219G>T
  hgvsp: ENST00000372383.4:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.219G>T
  hgvsp: ENST00000502650.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.219G>T
  hgvsp: ENST00000480691.2:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.219G>T
  hgvsp: ENST00000506081.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.15G>T
  hgvsp: ENST00000514426.1:c.15G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.219G>T
  hgvsp: ENST00000315660.4:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.219G>T
  hgvsp: ENST00000505965.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.219G>T
  hgvsp: ENST00000510887.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.219G>T
  hgvsp: ENST00000372384.2:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.219G>T
  hgvsp: ENST00000514897.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.219G>T
  hgvsp: ENST00000506724.1:c.219G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser73Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-107018442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018442
    reference: chr 0
allele count: 1
allele frequency: 1.139679066374909e-5
allele num: 87744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.208C>T
  hgvsp: ENSP00000361459.2:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.208C>T
  hgvsp: ENSP00000424653.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.208C>T
  hgvsp: ENSP00000427075.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.208C>T
  hgvsp: ENSP00000361458.4:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.4C>T
  hgvsp: ENSP00000421016.1:p.Arg2Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.208C>T
  hgvsp: ENSP00000427199.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.208C>T
  hgvsp: ENSP00000427427.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.208C>T
  hgvsp: ENSP00000422636.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.208C>T
  hgvsp: ENSP00000425155.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.208C>T
  hgvsp: ENSP00000425158.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.208C>T
  hgvsp: ENSP00000314655.4:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg70Trp
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

X-107018442-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018442
    reference: chr 0
allele count: 5
allele frequency: 5.698395331874544e-5
allele num: 87744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.208C>A
  hgvsp: ENST00000372383.4:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.4C>A
  hgvsp: ENST00000514426.1:c.4C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.208C>A
  hgvsp: ENST00000502650.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.208C>A
  hgvsp: ENST00000480691.2:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.208C>A
  hgvsp: ENST00000514897.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.208C>A
  hgvsp: ENST00000505965.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.208C>A
  hgvsp: ENST00000506081.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.208C>A
  hgvsp: ENST00000506724.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.208C>A
  hgvsp: ENST00000510887.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.208C>A
  hgvsp: ENST00000315660.4:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.208C>A
  hgvsp: ENST00000372384.2:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg70Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-107018465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018465
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018465
    reference: chr 0
allele count: 1
allele frequency: 1.140120852810398e-5
allele num: 87710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.185C>T
  hgvsp: ENSP00000361459.2:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.185C>T
  hgvsp: ENSP00000314655.4:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.185C>T
  hgvsp: ENSP00000424653.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.185C>T
  hgvsp: ENSP00000425158.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.185C>T
  hgvsp: ENSP00000422636.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.185C>T
  hgvsp: ENSP00000425155.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.185C>T
  hgvsp: ENSP00000427199.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.185C>T
  hgvsp: ENSP00000361458.4:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.185C>T
  hgvsp: ENSP00000427427.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.185C>T
  hgvsp: ENSP00000427075.1:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr62Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-107018465-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018465
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018465
    reference: chr 0
allele count: 1
allele frequency: 1.140120852810398e-5
allele num: 87710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.185C>G
  hgvsp: ENSP00000422636.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.185C>G
  hgvsp: ENSP00000361459.2:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.185C>G
  hgvsp: ENSP00000427199.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.185C>G
  hgvsp: ENSP00000427075.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.185C>G
  hgvsp: ENSP00000361458.4:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.185C>G
  hgvsp: ENSP00000424653.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.185C>G
  hgvsp: ENSP00000425155.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.185C>G
  hgvsp: ENSP00000314655.4:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.185C>G
  hgvsp: ENSP00000425158.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.185C>G
  hgvsp: ENSP00000427427.1:p.Thr62Ser
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr62Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-107018467-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018467
    reference: chr 0
allele count: 1
allele frequency: 1.140133851714191e-5
allele num: 87709
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.183T>A
  hgvsp: ENSP00000427427.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.183T>A
  hgvsp: ENSP00000314655.4:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.183T>A
  hgvsp: ENSP00000427075.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.183T>A
  hgvsp: ENSP00000425155.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.183T>A
  hgvsp: ENSP00000422636.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.183T>A
  hgvsp: ENSP00000427199.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-22T>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.183T>A
  hgvsp: ENSP00000361459.2:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.183T>A
  hgvsp: ENSP00000424653.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.183T>A
  hgvsp: ENSP00000425158.1:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.183T>A
  hgvsp: ENSP00000361458.4:p.Asn61Lys
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn61Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-107018473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018473
    reference: chr 0
allele count: 2
allele frequency: 2.280865816664006e-5
allele num: 87686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.177C>T
  hgvsp: ENST00000505965.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.177C>T
  hgvsp: ENST00000480691.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.177C>T
  hgvsp: ENST00000502650.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.177C>T
  hgvsp: ENST00000506081.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.177C>T
  hgvsp: ENST00000514897.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.177C>T
  hgvsp: ENST00000372383.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.177C>T
  hgvsp: ENST00000372384.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.177C>T
  hgvsp: ENST00000315660.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.177C>T
  hgvsp: ENST00000510887.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.177C>T
  hgvsp: ENST00000506724.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn59Asn
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-107018485-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018485
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018485
    reference: chr 0
allele count: 82
allele frequency: 9.366397477926143e-4
allele num: 87547
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.165G>C
  hgvsp: ENST00000480691.2:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.165G>C
  hgvsp: ENST00000502961.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.165G>C
  hgvsp: ENST00000502650.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.165G>C
  hgvsp: ENST00000514897.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.165G>C
  hgvsp: ENST00000506081.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.165G>C
  hgvsp: ENST00000505965.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.165G>C
  hgvsp: ENST00000510887.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.165G>C
  hgvsp: ENST00000315660.4:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.165G>C
  hgvsp: ENST00000372383.4:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.165G>C
  hgvsp: ENST00000506724.1:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.165G>C
  hgvsp: ENST00000372384.2:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-40G>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 31425
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17790
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu55Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-107018489-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018489
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018489
    reference: chr 0
allele count: 1
allele frequency: 1.143523653786779e-5
allele num: 87449
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.161A>T
  hgvsp: ENSP00000425158.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.161A>T
  hgvsp: ENSP00000361459.2:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.161A>T
  hgvsp: ENSP00000427199.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.161A>T
  hgvsp: ENSP00000427427.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.161A>T
  hgvsp: ENSP00000361458.4:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.161A>T
  hgvsp: ENSP00000422228.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.161A>T
  hgvsp: ENSP00000424653.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-44A>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.161A>T
  hgvsp: ENSP00000422636.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.161A>T
  hgvsp: ENSP00000425155.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.161A>T
  hgvsp: ENSP00000314655.4:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.161A>T
  hgvsp: ENSP00000427075.1:p.Lys54Met
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys54Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-107018497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018497
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018497
    reference: chr 0
allele count: 1
allele frequency: 1.148501205926266e-5
allele num: 87070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.153G>A
  hgvsp: ENST00000502650.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.153G>A
  hgvsp: ENST00000514897.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.153G>A
  hgvsp: ENST00000505965.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.153G>A
  hgvsp: ENST00000372384.2:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.153G>A
  hgvsp: ENST00000506081.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.153G>A
  hgvsp: ENST00000510887.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.153G>A
  hgvsp: ENST00000480691.2:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.153G>A
  hgvsp: ENST00000506724.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.153G>A
  hgvsp: ENST00000502961.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.153G>A
  hgvsp: ENST00000315660.4:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-52G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.153G>A
  hgvsp: ENST00000372383.4:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu51Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

X-107018512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018512
    reference: chr 0
allele count: 2
allele frequency: 2.337950786135952e-5
allele num: 85545
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.138C>T
  hgvsp: ENST00000506081.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.138C>T
  hgvsp: ENST00000372383.4:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.138C>T
  hgvsp: ENST00000502961.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.138C>T
  hgvsp: ENST00000480691.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.138C>T
  hgvsp: ENST00000372384.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-67C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.138C>T
  hgvsp: ENST00000505965.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.138C>T
  hgvsp: ENST00000510887.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.138C>T
  hgvsp: ENST00000514897.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.138C>T
  hgvsp: ENST00000502650.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.138C>T
  hgvsp: ENST00000506724.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.138C>T
  hgvsp: ENST00000315660.4:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16550
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser46Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-107018513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018513
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018513
    reference: chr 0
allele count: 1
allele frequency: 1.169248757673195e-5
allele num: 85525
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.137G>A
  hgvsp: ENSP00000427075.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.137G>A
  hgvsp: ENSP00000427427.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.137G>A
  hgvsp: ENSP00000424653.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.137G>A
  hgvsp: ENSP00000427199.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.137G>A
  hgvsp: ENSP00000422636.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.137G>A
  hgvsp: ENSP00000422228.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.137G>A
  hgvsp: ENSP00000361458.4:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.137G>A
  hgvsp: ENSP00000425158.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.137G>A
  hgvsp: ENSP00000425155.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.137G>A
  hgvsp: ENSP00000361459.2:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-68G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.137G>A
  hgvsp: ENSP00000314655.4:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser46Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-107018520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018520
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018520
    reference: chr 0
allele count: 1
allele frequency: 1.190589579959996e-5
allele num: 83992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.130A>G
  hgvsp: ENSP00000314655.4:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.130A>G
  hgvsp: ENSP00000427075.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.130A>G
  hgvsp: ENSP00000427427.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.130A>G
  hgvsp: ENSP00000422636.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.130A>G
  hgvsp: ENSP00000425158.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.130A>G
  hgvsp: ENSP00000425155.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.130A>G
  hgvsp: ENSP00000422228.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-75A>G
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.130A>G
  hgvsp: ENSP00000361458.4:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.130A>G
  hgvsp: ENSP00000424653.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.130A>G
  hgvsp: ENSP00000427199.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.130A>G
  hgvsp: ENSP00000361459.2:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr44Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-107018524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018524
    reference: chr 0
allele count: 36
allele frequency: 4.339545312085634e-4
allele num: 82958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.126C>T
  hgvsp: ENST00000506081.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.126C>T
  hgvsp: ENST00000315660.4:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.126C>T
  hgvsp: ENST00000480691.2:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.126C>T
  hgvsp: ENST00000506724.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.126C>T
  hgvsp: ENST00000514897.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.126C>T
  hgvsp: ENST00000502650.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.126C>T
  hgvsp: ENST00000372383.4:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.126C>T
  hgvsp: ENST00000510887.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.126C>T
  hgvsp: ENST00000372384.2:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.126C>T
  hgvsp: ENST00000505965.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.126C>T
  hgvsp: ENST00000502961.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16074
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: c.-79C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-107018527-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018527
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018527
    reference: chr 0
allele count: 10
allele frequency: 1.215465584091986e-4
allele num: 82273
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.123C>A
  hgvsp: ENST00000506081.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.123C>A
  hgvsp: ENST00000480691.2:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.123C>A
  hgvsp: ENST00000506724.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.123C>A
  hgvsp: ENST00000502650.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.123C>A
  hgvsp: ENST00000372384.2:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.123C>A
  hgvsp: ENST00000315660.4:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.123C>A
  hgvsp: ENST00000514897.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-3C>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.123C>A
  hgvsp: ENST00000502961.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.123C>A
  hgvsp: ENST00000510887.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.123C>A
  hgvsp: ENST00000372383.4:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.123C>A
  hgvsp: ENST00000505965.1:c.123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23986
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-79-3C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-107018530-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018530
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.120G>T
  hgvsp: ENST00000480691.2:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.120G>T
  hgvsp: ENST00000502650.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-6G>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.120G>T
  hgvsp: ENST00000514897.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.120G>T
  hgvsp: ENST00000506724.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.120G>T
  hgvsp: ENST00000372384.2:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.120G>T
  hgvsp: ENST00000505965.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.120G>T
  hgvsp: ENST00000315660.4:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.120G>T
  hgvsp: ENST00000372383.4:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.120G>T
  hgvsp: ENST00000510887.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.120G>T
  hgvsp: ENST00000506081.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.120G>T
  hgvsp: ENST00000502961.1:c.120G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-79-6G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-107018533-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018533
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018533
    reference: chr 0
allele count: 1
allele frequency: 1.235620466817412e-5
allele num: 80931
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-9C>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.117C>A
  hgvsp: ENSP00000427199.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.117C>A
  hgvsp: ENSP00000422228.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.117C>A
  hgvsp: ENSP00000361458.4:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.117C>A
  hgvsp: ENSP00000427075.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.117C>A
  hgvsp: ENSP00000424653.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.117C>A
  hgvsp: ENSP00000422636.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.117C>A
  hgvsp: ENSP00000425155.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.117C>A
  hgvsp: ENSP00000314655.4:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.117C>A
  hgvsp: ENSP00000361459.2:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.117C>A
  hgvsp: ENSP00000427427.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.117C>A
  hgvsp: ENSP00000425158.1:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn39Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

X-107018547-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018547
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018547
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 76179
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.103G>T
  hgvsp: ENSP00000422228.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.103G>T
  hgvsp: ENSP00000424653.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.103G>T
  hgvsp: ENSP00000361459.2:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-23G>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.103G>T
  hgvsp: ENSP00000361458.4:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.103G>T
  hgvsp: ENSP00000425155.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.103G>T
  hgvsp: ENSP00000314655.4:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.103G>T
  hgvsp: ENSP00000427427.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.103G>T
  hgvsp: ENSP00000422636.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.103G>T
  hgvsp: ENSP00000427199.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.103G>T
  hgvsp: ENSP00000425158.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.103G>T
  hgvsp: ENSP00000427075.1:p.Gly35Trp
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly35Trp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-107018551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018551
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018551
    reference: chr 0
allele count: 1
allele frequency: 1.354426265034132e-5
allele num: 73832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.99C>T
  hgvsp: ENST00000510887.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.99C>T
  hgvsp: ENST00000502650.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.99C>T
  hgvsp: ENST00000514897.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.99C>T
  hgvsp: ENST00000372383.4:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.99C>T
  hgvsp: ENST00000505965.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.99C>T
  hgvsp: ENST00000506081.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.99C>T
  hgvsp: ENST00000315660.4:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.99C>T
  hgvsp: ENST00000372384.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.99C>T
  hgvsp: ENST00000502961.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.99C>T
  hgvsp: ENST00000480691.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-27C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.99C>T
  hgvsp: ENST00000506724.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser33Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-107018567-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018567
    reference: chr 0
allele count: 2
allele frequency: 2.911208151382824e-5
allele num: 68700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.83G>T
  hgvsp: ENSP00000425158.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.83G>T
  hgvsp: ENSP00000427199.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.83G>T
  hgvsp: ENSP00000427075.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.83G>T
  hgvsp: ENSP00000361459.2:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.83G>T
  hgvsp: ENSP00000314655.4:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.83G>T
  hgvsp: ENSP00000422228.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.83G>T
  hgvsp: ENSP00000422636.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.83G>T
  hgvsp: ENSP00000424653.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.83G>T
  hgvsp: ENSP00000425155.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.83G>T
  hgvsp: ENSP00000427427.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.83G>T
  hgvsp: ENSP00000361458.4:p.Gly28Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-43G>T
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly28Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

X-107018572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018572
    reference: chr 0
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.78G>A
  hgvsp: ENST00000480691.2:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.78G>A
  hgvsp: ENST00000506724.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.78G>A
  hgvsp: ENST00000514897.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.78G>A
  hgvsp: ENST00000505965.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.78G>A
  hgvsp: ENST00000502961.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.78G>A
  hgvsp: ENST00000510887.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.78G>A
  hgvsp: ENST00000506081.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.78G>A
  hgvsp: ENST00000372383.4:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.78G>A
  hgvsp: ENST00000502650.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.78G>A
  hgvsp: ENST00000315660.4:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.78G>A
  hgvsp: ENST00000372384.2:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-48G>A
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg26Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-107018574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018574
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018574
    reference: chr 0
allele count: 2
allele frequency: 3.060584265536291e-5
allele num: 65347
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.76C>T
  hgvsp: ENSP00000427199.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.76C>T
  hgvsp: ENSP00000314655.4:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.76C>T
  hgvsp: ENSP00000425158.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.76C>T
  hgvsp: ENSP00000425155.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.76C>T
  hgvsp: ENSP00000427427.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.76C>T
  hgvsp: ENSP00000422228.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.76C>T
  hgvsp: ENSP00000427075.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.76C>T
  hgvsp: ENSP00000422636.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-50C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.76C>T
  hgvsp: ENSP00000361458.4:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.76C>T
  hgvsp: ENSP00000424653.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.76C>T
  hgvsp: ENSP00000361459.2:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-107018578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018578
    reference: chr 0
allele count: 1
allele frequency: 1.558360604643914e-5
allele num: 64170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.72C>T
  hgvsp: ENST00000372384.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.72C>T
  hgvsp: ENST00000510887.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.72C>T
  hgvsp: ENST00000480691.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.72C>T
  hgvsp: ENST00000514897.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.72C>T
  hgvsp: ENST00000506081.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.72C>T
  hgvsp: ENST00000315660.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.72C>T
  hgvsp: ENST00000502650.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.72C>T
  hgvsp: ENST00000502961.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-54C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.72C>T
  hgvsp: ENST00000372383.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.72C>T
  hgvsp: ENST00000506724.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.72C>T
  hgvsp: ENST00000505965.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala24Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-107018579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018579
    reference: chr 0
allele count: 2
allele frequency: 3.174099349309633e-5
allele num: 63010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.71C>T
  hgvsp: ENSP00000427199.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.71C>T
  hgvsp: ENSP00000422228.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.71C>T
  hgvsp: ENSP00000427075.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.71C>T
  hgvsp: ENSP00000422636.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.71C>T
  hgvsp: ENSP00000314655.4:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.71C>T
  hgvsp: ENSP00000424653.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.71C>T
  hgvsp: ENSP00000361459.2:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-55C>T
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.71C>T
  hgvsp: ENSP00000425155.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.71C>T
  hgvsp: ENSP00000427427.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.71C>T
  hgvsp: ENSP00000425158.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.71C>T
  hgvsp: ENSP00000361458.4:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17705
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10621
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala24Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-107018580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018580
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018580
    reference: chr 0
allele count: 1
allele frequency: 1.601178467351971e-5
allele num: 62454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.70G>A
  hgvsp: ENSP00000424653.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.70G>A
  hgvsp: ENSP00000427075.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.70G>A
  hgvsp: ENSP00000314655.4:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.70G>A
  hgvsp: ENSP00000425158.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.70G>A
  hgvsp: ENSP00000422636.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-56G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.70G>A
  hgvsp: ENSP00000427427.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.70G>A
  hgvsp: ENSP00000425155.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.70G>A
  hgvsp: ENSP00000427199.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.70G>A
  hgvsp: ENSP00000361459.2:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.70G>A
  hgvsp: ENSP00000422228.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.70G>A
  hgvsp: ENSP00000361458.4:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala24Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

X-107018604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018604
    reference: chr 0
allele count: 1
allele frequency: 2.078137988362427e-5
allele num: 48120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.46T>C
  hgvsp: ENSP00000422228.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.46T>C
  hgvsp: ENSP00000424653.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.46T>C
  hgvsp: ENSP00000361459.2:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.46T>C
  hgvsp: ENSP00000422636.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.46T>C
  hgvsp: ENSP00000427199.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.46T>C
  hgvsp: ENSP00000314655.4:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.46T>C
  hgvsp: ENSP00000425158.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.46T>C
  hgvsp: ENSP00000427075.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.46T>C
  hgvsp: ENSP00000425155.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.46T>C
  hgvsp: ENSP00000427427.1:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.46T>C
  hgvsp: ENSP00000361458.4:p.Cys16Arg
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-80T>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys16Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

X-107018607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018607
    reference: chr 0
allele count: 1
allele frequency: 2.164361621539727e-5
allele num: 46203
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-83G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.43G>A
  hgvsp: ENSP00000425155.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.43G>A
  hgvsp: ENSP00000422228.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.43G>A
  hgvsp: ENSP00000361459.2:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.43G>A
  hgvsp: ENSP00000422636.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.43G>A
  hgvsp: ENSP00000424653.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.43G>A
  hgvsp: ENSP00000361458.4:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.43G>A
  hgvsp: ENSP00000427199.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.43G>A
  hgvsp: ENSP00000427075.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.43G>A
  hgvsp: ENSP00000427427.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.43G>A
  hgvsp: ENSP00000314655.4:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.43G>A
  hgvsp: ENSP00000425158.1:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13819
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp15Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-107018624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018624
    reference: chr 0
allele count: 1
allele frequency: 2.835110002268088e-5
allele num: 35272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-100G>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.26G>A
  hgvsp: ENSP00000361458.4:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.26G>A
  hgvsp: ENSP00000424653.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.26G>A
  hgvsp: ENSP00000425158.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.26G>A
  hgvsp: ENSP00000425155.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.26G>A
  hgvsp: ENSP00000314655.4:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.26G>A
  hgvsp: ENSP00000427075.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.26G>A
  hgvsp: ENSP00000422228.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.26G>A
  hgvsp: ENSP00000361459.2:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.26G>A
  hgvsp: ENSP00000427427.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.26G>A
  hgvsp: ENSP00000422636.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.26G>A
  hgvsp: ENSP00000427199.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg9His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

X-107018625-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018625
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 34571
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.25C>A
  hgvsp: ENSP00000427427.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.25C>A
  hgvsp: ENSP00000361459.2:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.25C>A
  hgvsp: ENSP00000427075.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.25C>A
  hgvsp: ENSP00000425158.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.25C>A
  hgvsp: ENSP00000422228.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.25C>A
  hgvsp: ENSP00000424653.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.25C>A
  hgvsp: ENSP00000422636.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.25C>A
  hgvsp: ENSP00000361458.4:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.25C>A
  hgvsp: ENSP00000427199.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-101C>A
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.25C>A
  hgvsp: ENSP00000314655.4:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.25C>A
  hgvsp: ENSP00000425155.1:p.Arg9Ser
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22697
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg9Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-107018629-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018629
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018629
    reference: chr 0
allele count: 7
allele frequency: 2.176955372414865e-4
allele num: 32155
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.21T>C
  hgvsp: ENST00000510887.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.21T>C
  hgvsp: ENST00000372383.4:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.21T>C
  hgvsp: ENST00000372384.2:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.21T>C
  hgvsp: ENST00000502961.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.21T>C
  hgvsp: ENST00000505965.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.21T>C
  hgvsp: ENST00000480691.2:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.21T>C
  hgvsp: ENST00000315660.4:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.21T>C
  hgvsp: ENST00000514897.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.21T>C
  hgvsp: ENST00000502650.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.21T>C
  hgvsp: ENST00000506724.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.21T>C
  hgvsp: ENST00000506081.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-105T>C
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp7Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-107018646-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018646
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107018646
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 23140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425155
  ensembl transcript: ENST00000480691
  gene symbol: TSC22D3
  hgvsc: ENST00000480691.2:c.4G>T
  hgvsp: ENSP00000425155.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000424653
  ensembl transcript: ENST00000502650
  gene symbol: TSC22D3
  hgvsc: ENST00000502650.1:c.4G>T
  hgvsp: ENSP00000424653.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422228
  ensembl transcript: ENST00000502961
  gene symbol: TSC22D3
  hgvsc: ENST00000502961.1:c.4G>T
  hgvsp: ENSP00000422228.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000422636
  ensembl transcript: ENST00000510887
  gene symbol: TSC22D3
  hgvsc: ENST00000510887.1:c.4G>T
  hgvsp: ENSP00000422636.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427427
  ensembl transcript: ENST00000506081
  gene symbol: TSC22D3
  hgvsc: ENST00000506081.1:c.4G>T
  hgvsp: ENSP00000427427.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361458
  ensembl transcript: ENST00000372383
  gene symbol: TSC22D3
  hgvsc: ENST00000372383.4:c.4G>T
  hgvsp: ENSP00000361458.4:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427075
  ensembl transcript: ENST00000506724
  gene symbol: TSC22D3
  hgvsc: ENST00000506724.1:c.4G>T
  hgvsp: ENSP00000427075.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000361459
  ensembl transcript: ENST00000372384
  gene symbol: TSC22D3
  hgvsc: ENST00000372384.2:c.4G>T
  hgvsp: ENSP00000361459.2:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000427199
  ensembl transcript: ENST00000514897
  gene symbol: TSC22D3
  hgvsc: ENST00000514897.1:c.4G>T
  hgvsp: ENSP00000427199.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000314655
  ensembl transcript: ENST00000315660
  gene symbol: TSC22D3
  hgvsc: ENST00000315660.4:c.4G>T
  hgvsp: ENSP00000314655.4:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000425158
  ensembl transcript: ENST00000505965
  gene symbol: TSC22D3
  hgvsc: ENST00000505965.1:c.4G>T
  hgvsp: ENSP00000425158.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/3051
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157514
  ensembl protein: ENSP00000421016
  ensembl transcript: ENST00000514426
  gene symbol: TSC22D3
  hgvsc: ENST00000514426.1:c.-79-122G>T
  variant of: http://identifiers.org/hgnc/3051
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25775
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala2Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-107018646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107018646
    reference: chr 0
allele count: 1
allele frequency: 4.32152117545376e-5
allele num: 23140
alternate allele: T
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ala2Thr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 4647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9505
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.562e1

VQSLOD
type: SiteQuality
SIO_000300: -2.032e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 1.91498e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7745
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.525e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.021e0

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

FS
type: SiteQuality
SIO_000300: 1.379e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 1.91949e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27150
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.739e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.675e-1

DP
type: SiteQuality
SIO_000300: 1.924269e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 5.295e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2381
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.924984e6

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

FS
type: SiteQuality
SIO_000300: 1.4169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.333e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.890453834115806e-4
allele num: 10224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

FS
type: SiteQuality
SIO_000300: 1.903e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.925756e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.925747e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.183e0

QD
type: SiteQuality
SIO_000300: 7.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.032e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

VQSLOD
type: SiteQuality
SIO_000300: -2.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.4464e1

DP
type: SiteQuality
SIO_000300: 1.926575e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 9508
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.952e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

DP
type: SiteQuality
SIO_000300: 1.926824e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.722e-1

DP
type: SiteQuality
SIO_000300: 1.926982e6

FS
type: SiteQuality
SIO_000300: 5.311e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.656e1

ClippingRankSum
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SIO_000300: -3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.967e0

BaseQRankSum
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QD
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SIO_000300: 1.143e1

MQ
type: SiteQuality
SIO_000300: 5.902e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.997e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
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SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.235e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.916065e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.988e0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 2349
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variant carriers: 0

GenotypeQuality
all individuals: 26736
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 7.143e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e0

DP
type: SiteQuality
SIO_000300: 1.907558e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13334
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.34867e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 5233
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.184694033600594e-5
allele num: 45773
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8411
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8041
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e0

FS
type: SiteQuality
SIO_000300: 6.154e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.841e0

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 2.307e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.360451e6

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 872
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.737476047084588e-4
allele num: 3653
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 361
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 819
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 109
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.422993492407809e-4
allele num: 1844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.542e0

DP
type: SiteQuality
SIO_000300: 2.09792e5

QD
type: SiteQuality
SIO_000300: 2.319e1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 1.8886e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 1392
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.842615012106538e-4
allele num: 2065
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1269
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3745
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 111
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.46e-1

QD
type: SiteQuality
SIO_000300: 2.51e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.19526e5

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 1385
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3203
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.391772303276728e-4
allele num: 4181
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.13013e2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 2.50916e5

QD
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: -4.501e2

MQ
type: SiteQuality
SIO_000300: 5.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.811e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1943
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.419858763107212e-5
allele num: 46730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

QD
type: SiteQuality
SIO_000300: 2.018e1

FS
type: SiteQuality
SIO_000300: 1.058e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

DP
type: SiteQuality
SIO_000300: 1.608683e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.495e0

VQSLOD
type: SiteQuality
SIO_000300: -6.338e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8423
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.140365146293958e-5
allele num: 46721
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.059e1

DP
type: SiteQuality
SIO_000300: 1.609108e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 184
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variant carriers: 20

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 37386
bin: 6.25e1
variant carriers: 10

East Asian
type: Population
allele count: 11
allele frequency: 1.688411358403684e-3
allele num: 6515
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.62937214859874e-3
allele num: 9206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.457301078402798e-4
allele num: 6862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 120
allele frequency: 3.01659125188537e-2
allele num: 3978
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 2.146690518783542e-2
allele num: 559
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 1.069182389937107e-2
allele num: 7950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 328
allele frequency: 7.267570681556324e-3
allele num: 45132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.689e0

VQSLOD
type: SiteQuality
SIO_000300: -9.987e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 4.0571e1

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

DP
type: SiteQuality
SIO_000300: 1.578595e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.362e0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 623
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40436
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6911
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

DP
type: SiteQuality
SIO_000300: 1.51283e6

MQ
type: SiteQuality
SIO_000300: 5.514e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 9.67e0

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

FS
type: SiteQuality
SIO_000300: 4.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.835e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46805
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.187225454113736e-4
allele num: 8423
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.425e1

DP
type: SiteQuality
SIO_000300: 1.519602e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42778
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8443
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.362e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

DP
type: SiteQuality
SIO_000300: 1.536102e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

GenotypeQuality
all individuals: 440
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43585
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.602472348731295e-4
allele num: 7685
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 2.273e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.549592e6

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47353
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 1.560096e6

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.756e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeQuality
all individuals: 1626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8036
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8921
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.302521008403361e-5
allele num: 47600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 4.468e0

DP
type: SiteQuality
SIO_000300: 1.581115e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

QD
type: SiteQuality
SIO_000300: 1.57e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.004e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 1536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09881207236704e-5
allele num: 47646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.443e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.238e0

QD
type: SiteQuality
SIO_000300: 1.045e1

MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

DP
type: SiteQuality
SIO_000300: 1.584722e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47923
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.611845e6

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10093
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.61609160765406e-3
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.557e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.443e-1

DP
type: SiteQuality
SIO_000300: 1.615353e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.481e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47960
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.179e-1

QD
type: SiteQuality
SIO_000300: 2.844e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.613494e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.20536386921802e-3
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.858e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 1.614535e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.193e-1

QD
type: SiteQuality
SIO_000300: 1.619e1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

FS
type: SiteQuality
SIO_000300: 1.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.977066034005536e-4
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47975
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.894e-1

QD
type: SiteQuality
SIO_000300: 3.259e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 1.614196e6

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8261
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167448063178513e-5
allele num: 47991
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.181e0

DP
type: SiteQuality
SIO_000300: 1.61508e6

QD
type: SiteQuality
SIO_000300: 2.369e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.668e-1

FS
type: SiteQuality
SIO_000300: 1.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

GenotypeDepth
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
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variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8264
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47991
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.615014e6

QD
type: SiteQuality
SIO_000300: 1.329e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -9.520999999999999e-1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 1820
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.88e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

FS
type: SiteQuality
SIO_000300: 1.053e0

DP
type: SiteQuality
SIO_000300: 1.614974e6

QD
type: SiteQuality
SIO_000300: 1.764e1

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 1821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.14569252226156e-4
allele num: 9321
num of homozygotes: 0

East Asian
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BaseQRankSum
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DP
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MQRankSum
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: 2.792e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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num of homozygotes: 0

South Asian
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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African
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Latino
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South Asian
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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Latino
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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SIO_000300: 3.336e0

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.405e0

QD
type: SiteQuality
SIO_000300: 2.161e1

DP
type: SiteQuality
SIO_000300: 1.612139e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

GenotypeDepth
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variant carriers: 8

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 64

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 1.523753861568005e-3
allele num: 47908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.782928459995543e-3
allele num: 4487
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10087
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176055509820064e-4
allele num: 8503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 1.893e0

VQSLOD
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SIO_000300: 2.819e1

InbreedingCoeff
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SIO_000300: 4.727e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.771e1

DP
type: SiteQuality
SIO_000300: 1.608879e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4475
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089514814660036e-5
allele num: 47858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.705e0

QD
type: SiteQuality
SIO_000300: 1.437e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.601633e6

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.049e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.645e0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178550383028874e-4
allele num: 8485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47661
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

DP
type: SiteQuality
SIO_000300: 1.5873e6

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 3.381e1

GenotypeDepth
all individuals: 14
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variant carriers: 1

GenotypeDepth
all individuals: 14
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 337
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4245
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8393
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.037489812550937e-4
allele num: 9816
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.711e1

BaseQRankSum
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SIO_000300: -2.203e0

FS
type: SiteQuality
SIO_000300: 1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 1.68e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.523301e6

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
all individuals: 219
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1309
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GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9811
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4239
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.135793767753786e-5
allele num: 46821
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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FS
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SIO_000300: 4.679e0

BaseQRankSum
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SIO_000300: -2.042e0

ReadPosRankSum
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SIO_000300: 2.19e0

QD
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SIO_000300: 1.38e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.037452017844175e-4
allele num: 9639
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4103
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
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SIO_000300: -9.0e-4

ReadPosRankSum
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SIO_000300: -8.31e-1

VQSLOD
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MQRankSum
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SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 4.896e0

MQ
type: SiteQuality
SIO_000300: 5.885e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 8.75e0

DP
type: SiteQuality
SIO_000300: 1.463765e6

GenotypeDepth
all individuals: 6
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variant carriers: 6

GenotypeDepth
all individuals: 7
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variant carriers: 4

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38557
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 1070
bin: 3.25e1
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 674
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 6083
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 1382
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GenotypeQuality
all individuals: 275
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variant carriers: 0

African
type: Population
allele count: 36
allele frequency: 4.354663118422644e-3
allele num: 8267
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8885
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45347
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
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SIO_000300: 5.977e1

VQSLOD
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ReadPosRankSum
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SIO_000300: 3.5e-1

FS
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SIO_000300: 6.63e-1

ClippingRankSum
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SIO_000300: -1.8e-1

BaseQRankSum
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SIO_000300: -2.791e0

InbreedingCoeff
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SIO_000300: 9.030000000000001e-2

DP
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SIO_000300: 1.424708e6

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 2.22603120895755e-4
allele num: 44923
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44451
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3903
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -7.19e-1

BaseQRankSum
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SIO_000300: -1.256e0

ClippingRankSum
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SIO_000300: -2.37e-1

InbreedingCoeff
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MQRankSum
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MQ
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FS
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DP
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SIO_000300: 1.375519e6

ReadPosRankSum
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SIO_000300: 1.18e-1

QD
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SIO_000300: 6.73e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3863
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44122
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8145
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.069747539580659e-4
allele num: 9348
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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DP
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VQSLOD
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QD
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MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7859
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41277
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3573
num of homozygotes: 0

QD
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SIO_000300: 1.698e1

VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.300897619357356e-4
allele num: 7687
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.366306872523569e-4
allele num: 7319
num of homozygotes: 0

Other
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European (Non-Finnish)
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allele frequency: 2.694764073405373e-5
allele num: 37109
num of homozygotes: 0

East Asian
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Latino
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South Asian
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European (Finnish)
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allele count: 0
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.77592715967133e-5
allele num: 36024
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Finnish)
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Other
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MQ
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DP
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MQRankSum
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FS
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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Other
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DP
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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Latino
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European (Finnish)
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 33679
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Latino
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Other
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 575
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16091
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.223295899712719e-5
allele num: 19145
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2415
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 5.73718e5

FS
type: SiteQuality
SIO_000300: 1.927e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16593
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 1.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1157
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3023
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 5.64723e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18573
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1037
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4603
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 4.014452027298274e-4
allele num: 17437
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

FS
type: SiteQuality
SIO_000300: 6.056e0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 5.32593e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1777
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2985
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 653
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.25611e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.93e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.824e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1