19-11338023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11338023
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11338023
    reference: chr 19
allele count: 1
allele frequency: 8.364141253617491e-6
allele num: 119558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000468638
  ensembl transcript: ENST00000587656
  gene symbol: DOCK6
  hgvsc: ENST00000587656.1:c.810G>A
  hgvsp: ENSP00000468638.1:p.Arg271His
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000294618
  ensembl transcript: ENST00000294618
  gene symbol: DOCK6
  hgvsc: ENST00000294618.7:c.2945G>A
  hgvsp: ENSP00000294618.6:p.Arg982His
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000321556
  ensembl transcript: ENST00000319867
  gene symbol: DOCK6
  hgvsc: ENST00000319867.7:c.962G>A
  hgvsp: ENSP00000321556.7:p.Arg321His
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000467191
  ensembl transcript: ENST00000590680
  gene symbol: DOCK6
  hgvsc: ENST00000590680.1:c.1381G>A
  hgvsp: ENSP00000467191.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/19189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg982His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

19-11338024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11338024
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11338024
    reference: chr 19
allele count: 2
allele frequency: 1.672688344707614e-5
allele num: 119568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000468638
  ensembl transcript: ENST00000587656
  gene symbol: DOCK6
  hgvsc: ENST00000587656.1:c.809C>T
  hgvsp: ENSP00000468638.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000467191
  ensembl transcript: ENST00000590680
  gene symbol: DOCK6
  hgvsc: ENST00000590680.1:c.1380C>T
  hgvsp: ENSP00000467191.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000321556
  ensembl transcript: ENST00000319867
  gene symbol: DOCK6
  hgvsc: ENST00000319867.7:c.961C>T
  hgvsp: ENSP00000321556.7:p.Arg321Cys
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000294618
  ensembl transcript: ENST00000294618
  gene symbol: DOCK6
  hgvsc: ENST00000294618.7:c.2944C>T
  hgvsp: ENSP00000294618.6:p.Arg982Cys
  variant of: http://identifiers.org/hgnc/19189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg982Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

19-11338025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11338025
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11338025
    reference: chr 19
allele count: 2
allele frequency: 1.672744304305644e-5
allele num: 119564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000294618
  ensembl transcript: ENST00000294618
  gene symbol: DOCK6
  hgvsc: ENST00000294618.7:c.2943C>T
  hgvsp: ENST00000294618.7:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000321556
  ensembl transcript: ENST00000319867
  gene symbol: DOCK6
  hgvsc: ENST00000319867.7:c.960C>T
  hgvsp: ENST00000319867.7:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000468638
  ensembl transcript: ENST00000587656
  gene symbol: DOCK6
  hgvsc: ENST00000587656.1:c.808C>T
  hgvsp: ENST00000587656.1:c.808C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000467191
  ensembl transcript: ENST00000590680
  gene symbol: DOCK6
  hgvsc: ENST00000590680.1:c.1379C>T
  hgvsp: ENST00000590680.1:c.1379C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr981Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

19-11338026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11338026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11338026
    reference: chr 19
allele count: 3
allele frequency: 2.50899054946893e-5
allele num: 119570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000468638
  ensembl transcript: ENST00000587656
  gene symbol: DOCK6
  hgvsc: ENST00000587656.1:c.807C>T
  hgvsp: ENSP00000468638.1:p.Thr270Ile
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000321556
  ensembl transcript: ENST00000319867
  gene symbol: DOCK6
  hgvsc: ENST00000319867.7:c.959C>T
  hgvsp: ENSP00000321556.7:p.Thr320Ile
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000294618
  ensembl transcript: ENST00000294618
  gene symbol: DOCK6
  hgvsc: ENST00000294618.7:c.2942C>T
  hgvsp: ENSP00000294618.6:p.Thr981Ile
  variant of: http://identifiers.org/hgnc/19189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130158
  ensembl protein: ENSP00000467191
  ensembl transcript: ENST00000590680
  gene symbol: DOCK6
  hgvsc: ENST00000590680.1:c.1378C>T
  hgvsp: ENSP00000467191.1:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/19189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18430
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr981Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-46309191-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309191
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309191
    reference: chr 21
allele count: 1
allele frequency: 8.599043786330961e-6
allele num: 116292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1706T>G
  hgvsp: ENSP00000380952.3:p.Ile569Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1877T>G
  hgvsp: ENSP00000380955.1:p.Ile626Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1877T>G
  hgvsp: ENSP00000303242.5:p.Ile626Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1877T>G
  hgvsp: ENSP00000380950.1:p.Ile626Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1277T>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1877T>G
  hgvsp: ENSP00000347279.4:p.Ile626Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1877T>G
  hgvsp: ENSP00000380948.2:p.Ile626Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3933T>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1704T>G
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile626Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

21-46309191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309191
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309191
    reference: chr 21
allele count: 1
allele frequency: 8.599043786330961e-6
allele num: 116292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1706T>C
  hgvsp: ENSP00000380952.3:p.Ile569Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1877T>C
  hgvsp: ENSP00000303242.5:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3933T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1877T>C
  hgvsp: ENSP00000380950.1:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1877T>C
  hgvsp: ENSP00000380955.1:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1877T>C
  hgvsp: ENSP00000347279.4:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1877T>C
  hgvsp: ENSP00000380948.2:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1277T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1704T>C
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7600
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile626Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

21-46309196-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309196
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309196
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 116514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1701G>C
  hgvsp: ENSP00000380952.3:p.Lys567Asn
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1272G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1872G>C
  hgvsp: ENSP00000347279.4:p.Lys624Asn
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1699G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1872G>C
  hgvsp: ENSP00000303242.5:p.Lys624Asn
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1872G>C
  hgvsp: ENSP00000380948.2:p.Lys624Asn
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1872G>C
  hgvsp: ENSP00000380955.1:p.Lys624Asn
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3928G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1872G>C
  hgvsp: ENSP00000380950.1:p.Lys624Asn
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys624Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

21-46309202-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309202
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309202
    reference: chr 21
allele count: 1
allele frequency: 8.571183680466272e-6
allele num: 116670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1866T>C
  hgvsp: ENST00000302347.5:c.1866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3922T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1866T>C
  hgvsp: ENST00000355153.4:c.1866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1866T>C
  hgvsp: ENST00000397850.2:c.1866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1266T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1866T>C
  hgvsp: ENST00000397857.1:c.1866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1693T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1695T>C
  hgvsp: ENST00000397854.3:c.1695T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1866T>C
  hgvsp: ENST00000397852.1:c.1866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys622Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

21-46309204-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309204
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309203
    reference: chr 21
allele count: 1
allele frequency: 8.5647236163689e-6
allele num: 116758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3919delC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1863delC
  hgvsp: ENSP00000380955.1:p.Cys622ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1863delC
  hgvsp: ENSP00000303242.5:p.Cys622ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1692delC
  hgvsp: ENSP00000380952.3:p.Cys565ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1863delC
  hgvsp: ENSP00000380948.2:p.Cys622ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1863delC
  hgvsp: ENSP00000380950.1:p.Cys622ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1263delC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1690delC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1863delC
  hgvsp: ENSP00000347279.4:p.Cys622ValfsTer11
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys622ValfsTer11
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

21-46309212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309212
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309212
    reference: chr 21
allele count: 1
allele frequency: 8.546132020647455e-6
allele num: 117012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1856C>T
  hgvsp: ENSP00000303242.5:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1685C>T
  hgvsp: ENSP00000380952.3:p.Pro562Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1856C>T
  hgvsp: ENSP00000380955.1:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1683C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1256C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3912C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1856C>T
  hgvsp: ENSP00000347279.4:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1856C>T
  hgvsp: ENSP00000380950.1:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1856C>T
  hgvsp: ENSP00000380948.2:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro619Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

21-46309219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309219
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309219
    reference: chr 21
allele count: 2
allele frequency: 1.705989729941826e-5
allele num: 117234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1849G>A
  hgvsp: ENSP00000380955.1:p.Gly617Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1849G>A
  hgvsp: ENSP00000380948.2:p.Gly617Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1676G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1849G>A
  hgvsp: ENSP00000303242.5:p.Gly617Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3905G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1849G>A
  hgvsp: ENSP00000347279.4:p.Gly617Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1849G>A
  hgvsp: ENSP00000380950.1:p.Gly617Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1678G>A
  hgvsp: ENSP00000380952.3:p.Gly560Ser
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1249G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43721
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly617Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

21-46309220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309220
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309220
    reference: chr 21
allele count: 7
allele frequency: 5.964756808343842e-5
allele num: 117356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1848C>T
  hgvsp: ENST00000397857.1:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1848C>T
  hgvsp: ENST00000397852.1:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1675C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1248C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1848C>T
  hgvsp: ENST00000302347.5:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1677C>T
  hgvsp: ENST00000397854.3:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1848C>T
  hgvsp: ENST00000355153.4:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1848C>T
  hgvsp: ENST00000397850.2:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3904C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro616Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

21-46309237-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309237
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309237
    reference: chr 21
allele count: 1
allele frequency: 8.500943604740126e-6
allele num: 117634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1831C>G
  hgvsp: ENSP00000380950.1:p.Leu611Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1660C>G
  hgvsp: ENSP00000380952.3:p.Leu554Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3887C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1831C>G
  hgvsp: ENSP00000380955.1:p.Leu611Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1231C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1831C>G
  hgvsp: ENSP00000380948.2:p.Leu611Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1831C>G
  hgvsp: ENSP00000303242.5:p.Leu611Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1658C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1831C>G
  hgvsp: ENSP00000347279.4:p.Leu611Val
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25903
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu611Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

21-46309242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309242
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309242
    reference: chr 21
allele count: 2
allele frequency: 1.699379726399864e-5
allele num: 117690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1226T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3882T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1826T>C
  hgvsp: ENSP00000380948.2:p.Leu609Pro
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1826T>C
  hgvsp: ENSP00000380955.1:p.Leu609Pro
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1826T>C
  hgvsp: ENSP00000303242.5:p.Leu609Pro
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1655T>C
  hgvsp: ENSP00000380952.3:p.Leu552Pro
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1826T>C
  hgvsp: ENSP00000347279.4:p.Leu609Pro
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1653T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1826T>C
  hgvsp: ENSP00000380950.1:p.Leu609Pro
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu609Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

21-46309250-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309250
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309250
    reference: chr 21
allele count: 10
allele frequency: 8.503401360544217e-5
allele num: 117600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1818C>A
  hgvsp: ENST00000397852.1:c.1818C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1818C>A
  hgvsp: ENST00000397850.2:c.1818C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1218C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1818C>A
  hgvsp: ENST00000397857.1:c.1818C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1818C>A
  hgvsp: ENST00000302347.5:c.1818C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1647C>A
  hgvsp: ENST00000397854.3:c.1647C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1818C>A
  hgvsp: ENST00000355153.4:c.1818C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3874C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1645C>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly606Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-46309259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309259
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309259
    reference: chr 21
allele count: 1
allele frequency: 8.514261387824607e-6
allele num: 117450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1638C>T
  hgvsp: ENST00000397854.3:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1809C>T
  hgvsp: ENST00000397850.2:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1809C>T
  hgvsp: ENST00000302347.5:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1809C>T
  hgvsp: ENST00000397852.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1809C>T
  hgvsp: ENST00000397857.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3865C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1809C>T
  hgvsp: ENST00000355153.4:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1209C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1636C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys603Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/21-46309264-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309264
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309264
    reference: chr 21
allele count: 1
allele frequency: 8.527911855503062e-6
allele num: 117262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1204G>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1804G>T
  hgvsp: ENSP00000347279.4:p.Glu602Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1631G>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1633G>T
  hgvsp: ENSP00000380952.3:p.Glu545Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1804G>T
  hgvsp: ENSP00000380955.1:p.Glu602Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1804G>T
  hgvsp: ENSP00000380948.2:p.Glu602Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3860G>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1804G>T
  hgvsp: ENSP00000303242.5:p.Glu602Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1804G>T
  hgvsp: ENSP00000380950.1:p.Glu602Ter
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu602Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-46309265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309265
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309265
    reference: chr 21
allele count: 17
allele frequency: 1.451973830306964e-4
allele num: 117082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1632C>T
  hgvsp: ENST00000397854.3:c.1632C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1803C>T
  hgvsp: ENST00000355153.4:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1803C>T
  hgvsp: ENST00000397857.1:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1630C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1203C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3859C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1803C>T
  hgvsp: ENST00000397852.1:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1803C>T
  hgvsp: ENST00000302347.5:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1803C>T
  hgvsp: ENST00000397850.2:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21755
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys601Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

21-46309265-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309265
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309265
    reference: chr 21
allele count: 1
allele frequency: 8.541022531217438e-6
allele num: 117082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1803C>A
  hgvsp: ENSP00000303242.5:p.Cys601Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3859C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1203C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1803C>A
  hgvsp: ENSP00000380950.1:p.Cys601Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1803C>A
  hgvsp: ENSP00000347279.4:p.Cys601Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1630C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1632C>A
  hgvsp: ENSP00000380952.3:p.Cys544Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1803C>A
  hgvsp: ENSP00000380955.1:p.Cys601Ter
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1803C>A
  hgvsp: ENSP00000380948.2:p.Cys601Ter
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys601Ter
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

21-46309270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309270
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309270
    reference: chr 21
allele count: 3
allele frequency: 2.564672491322858e-5
allele num: 116974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1627G>A
  hgvsp: ENSP00000380952.3:p.Val543Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3854G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1798G>A
  hgvsp: ENSP00000303242.5:p.Val600Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1798G>A
  hgvsp: ENSP00000347279.4:p.Val600Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1798G>A
  hgvsp: ENSP00000380950.1:p.Val600Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1198G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1798G>A
  hgvsp: ENSP00000380948.2:p.Val600Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1798G>A
  hgvsp: ENSP00000380955.1:p.Val600Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1625G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val600Ile
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

21-46309271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309271
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309271
    reference: chr 21
allele count: 3
allele frequency: 2.565286542506798e-5
allele num: 116946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1797C>T
  hgvsp: ENST00000302347.5:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1197C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1797C>T
  hgvsp: ENST00000397852.1:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1797C>T
  hgvsp: ENST00000355153.4:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1626C>T
  hgvsp: ENST00000397854.3:c.1626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1797C>T
  hgvsp: ENST00000397857.1:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3853C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1797C>T
  hgvsp: ENST00000397850.2:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1624C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn599Asn
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-46309278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309278
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309278
    reference: chr 21
allele count: 2
allele frequency: 1.720489307158956e-5
allele num: 116246
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1790G>A
  hgvsp: ENSP00000380948.2:p.Arg597His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1790G>A
  hgvsp: ENSP00000380950.1:p.Arg597His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1617G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1790G>A
  hgvsp: ENSP00000303242.5:p.Arg597His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1790G>A
  hgvsp: ENSP00000347279.4:p.Arg597His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1790G>A
  hgvsp: ENSP00000380955.1:p.Arg597His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1190G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3846G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1619G>A
  hgvsp: ENSP00000380952.3:p.Arg540His
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg597His
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

21-46309279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309279
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309279
    reference: chr 21
allele count: 6
allele frequency: 5.154107823935677e-5
allele num: 116412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1789C>T
  hgvsp: ENSP00000380950.1:p.Arg597Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1789C>T
  hgvsp: ENSP00000380948.2:p.Arg597Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1789C>T
  hgvsp: ENSP00000347279.4:p.Arg597Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3845C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1789C>T
  hgvsp: ENSP00000303242.5:p.Arg597Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1618C>T
  hgvsp: ENSP00000380952.3:p.Arg540Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1789C>T
  hgvsp: ENSP00000380955.1:p.Arg597Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1616C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1189C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg597Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

21-46309280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309280
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309280
    reference: chr 21
allele count: 2
allele frequency: 1.719483467166463e-5
allele num: 116314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1788C>T
  hgvsp: ENST00000397852.1:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1788C>T
  hgvsp: ENST00000397857.1:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1788C>T
  hgvsp: ENST00000302347.5:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3844C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1188C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1615C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1617C>T
  hgvsp: ENST00000397854.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1788C>T
  hgvsp: ENST00000397850.2:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1788C>T
  hgvsp: ENST00000355153.4:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25608
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7433
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys596Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

21-46309284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309284
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309284
    reference: chr 21
allele count: 16
allele frequency: 1.381883507220341e-4
allele num: 115784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1613G>A
  hgvsp: ENSP00000380952.3:p.Arg538Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1784G>A
  hgvsp: ENSP00000380955.1:p.Arg595Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1611G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1784G>A
  hgvsp: ENSP00000380948.2:p.Arg595Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1784G>A
  hgvsp: ENSP00000303242.5:p.Arg595Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3840G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1784G>A
  hgvsp: ENSP00000347279.4:p.Arg595Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1784G>A
  hgvsp: ENSP00000380950.1:p.Arg595Gln
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1184G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25673
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg595Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

21-46309285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309285
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309285
    reference: chr 21
allele count: 7
allele frequency: 6.043130687017629e-5
allele num: 115834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1783C>T
  hgvsp: ENSP00000380950.1:p.Arg595Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1783C>T
  hgvsp: ENSP00000380955.1:p.Arg595Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1783C>T
  hgvsp: ENSP00000380948.2:p.Arg595Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1183C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1783C>T
  hgvsp: ENSP00000347279.4:p.Arg595Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1783C>T
  hgvsp: ENSP00000303242.5:p.Arg595Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1612C>T
  hgvsp: ENSP00000380952.3:p.Arg538Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3839C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1610C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25752
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7248
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg595Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

21-46309287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309287
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309287
    reference: chr 21
allele count: 1
allele frequency: 8.64737725047993e-6
allele num: 115642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1781G>A
  hgvsp: ENSP00000347279.4:p.Gly594Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1610G>A
  hgvsp: ENSP00000380952.3:p.Gly537Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1781G>A
  hgvsp: ENSP00000380955.1:p.Gly594Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3837G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1608G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1781G>A
  hgvsp: ENSP00000303242.5:p.Gly594Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1781G>A
  hgvsp: ENSP00000380948.2:p.Gly594Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1781G>A
  hgvsp: ENSP00000380950.1:p.Gly594Asp
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25637
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly594Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

21-46309290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309290
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309290
    reference: chr 21
allele count: 1
allele frequency: 8.672124323574303e-6
allele num: 115312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1778G>A
  hgvsp: ENSP00000380950.1:p.Arg593His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1778G>A
  hgvsp: ENSP00000380948.2:p.Arg593His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3834G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1607G>A
  hgvsp: ENSP00000380952.3:p.Arg536His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1778G>A
  hgvsp: ENSP00000380955.1:p.Arg593His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1605G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1778G>A
  hgvsp: ENSP00000347279.4:p.Arg593His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1178G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1778G>A
  hgvsp: ENSP00000303242.5:p.Arg593His
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg593His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/21-46309295-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309295
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309295
    reference: chr 21
allele count: 1
allele frequency: 8.753961167428261e-6
allele num: 114234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1600T>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1602T>G
  hgvsp: ENSP00000380952.3:p.Ser534Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3829T>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1773T>G
  hgvsp: ENSP00000347279.4:p.Ser591Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1173T>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1773T>G
  hgvsp: ENSP00000303242.5:p.Ser591Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1773T>G
  hgvsp: ENSP00000380950.1:p.Ser591Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1773T>G
  hgvsp: ENSP00000380955.1:p.Ser591Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1773T>G
  hgvsp: ENSP00000380948.2:p.Ser591Arg
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser591Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

21-46309296-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309296
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309296
    reference: chr 21
allele count: 1
allele frequency: 8.75242879899172e-6
allele num: 114254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1772G>C
  hgvsp: ENSP00000347279.4:p.Ser591Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1772G>C
  hgvsp: ENSP00000380950.1:p.Ser591Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1599G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1772G>C
  hgvsp: ENSP00000380948.2:p.Ser591Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1601G>C
  hgvsp: ENSP00000380952.3:p.Ser534Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1172G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1772G>C
  hgvsp: ENSP00000380955.1:p.Ser591Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1772G>C
  hgvsp: ENSP00000303242.5:p.Ser591Thr
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3828G>C
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19768
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser591Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

21-46309306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309306
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309306
    reference: chr 21
allele count: 3
allele frequency: 2.729257641921397e-5
allele num: 109920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1591G>A
  hgvsp: ENSP00000380952.3:p.Val531Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1762G>A
  hgvsp: ENSP00000380955.1:p.Val588Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1762G>A
  hgvsp: ENSP00000347279.4:p.Val588Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1589G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1162G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1762G>A
  hgvsp: ENSP00000380950.1:p.Val588Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3818G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1762G>A
  hgvsp: ENSP00000303242.5:p.Val588Ile
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1762G>A
  hgvsp: ENSP00000380948.2:p.Val588Ile
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val588Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

21-46309308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309308
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309308
    reference: chr 21
allele count: 1
allele frequency: 9.154658805866305e-6
allele num: 109234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3816G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1760G>A
  hgvsp: ENSP00000347279.4:p.Arg587His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1760G>A
  hgvsp: ENSP00000380955.1:p.Arg587His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1160G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1760G>A
  hgvsp: ENSP00000380950.1:p.Arg587His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1589G>A
  hgvsp: ENSP00000380952.3:p.Arg530His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1760G>A
  hgvsp: ENSP00000380948.2:p.Arg587His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1760G>A
  hgvsp: ENSP00000303242.5:p.Arg587His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1587G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17331
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6005
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg587His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

21-46309309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309309
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309309
    reference: chr 21
allele count: 6
allele frequency: 5.51856075935396e-5
allele num: 108724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1588C>T
  hgvsp: ENSP00000380952.3:p.Arg530Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1759C>T
  hgvsp: ENSP00000303242.5:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1586C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1159C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1759C>T
  hgvsp: ENSP00000380955.1:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1759C>T
  hgvsp: ENSP00000380948.2:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1759C>T
  hgvsp: ENSP00000380950.1:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3815C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1759C>T
  hgvsp: ENSP00000347279.4:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17302
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg587Cys
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-46309312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309312
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309312
    reference: chr 21
allele count: 872
allele frequency: 8.23869541391886e-3
allele num: 105842
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1756C>T
  hgvsp: ENSP00000380948.2:p.Arg586Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1756C>T
  hgvsp: ENSP00000347279.4:p.Arg586Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1756C>T
  hgvsp: ENSP00000380950.1:p.Arg586Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1756C>T
  hgvsp: ENSP00000380955.1:p.Arg586Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1756C>T
  hgvsp: ENSP00000303242.5:p.Arg586Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1585C>T
  hgvsp: ENSP00000380952.3:p.Arg529Trp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1156C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1583C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3812C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 1.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 20468
  bin: 2.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 1.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 16641
  bin: 2.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30134
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg586Trp
num of homozygotes: 11
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

21-46309313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309313
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309313
    reference: chr 21
allele count: 14
allele frequency: 1.325556733828208e-4
allele num: 105616
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1755G>A
  hgvsp: ENST00000397850.2:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1582G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1755G>A
  hgvsp: ENST00000397852.1:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3811G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1755G>A
  hgvsp: ENST00000302347.5:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1755G>A
  hgvsp: ENST00000355153.4:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1584G>A
  hgvsp: ENST00000397854.3:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1155G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1755G>A
  hgvsp: ENST00000397857.1:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20582
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro585Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

21-46309314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309314
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309314
    reference: chr 21
allele count: 3
allele frequency: 2.847056143947159e-5
allele num: 105372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1583C>T
  hgvsp: ENSP00000380952.3:p.Pro528Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1754C>T
  hgvsp: ENSP00000347279.4:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1581C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1754C>T
  hgvsp: ENSP00000380948.2:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1154C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1754C>T
  hgvsp: ENSP00000380955.1:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1754C>T
  hgvsp: ENSP00000303242.5:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3810C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1754C>T
  hgvsp: ENSP00000380950.1:p.Pro585Leu
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro585Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

21-46309318-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309318
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309318
    reference: chr 21
allele count: 1
allele frequency: 9.674548198599126e-6
allele num: 103364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1750A>C
  hgvsp: ENSP00000347279.4:p.Asn584His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1750A>C
  hgvsp: ENSP00000380955.1:p.Asn584His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1150A>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1579A>C
  hgvsp: ENSP00000380952.3:p.Asn527His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1750A>C
  hgvsp: ENSP00000380950.1:p.Asn584His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1750A>C
  hgvsp: ENSP00000380948.2:p.Asn584His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1750A>C
  hgvsp: ENSP00000303242.5:p.Asn584His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1577A>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3806A>C
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn584His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-46309328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309328
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309328
    reference: chr 21
allele count: 1
allele frequency: 1.06401089547157e-5
allele num: 93984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1740G>A
  hgvsp: ENST00000397852.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1740G>A
  hgvsp: ENST00000397850.2:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1569G>A
  hgvsp: ENST00000397854.3:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1740G>A
  hgvsp: ENST00000355153.4:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1140G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1740G>A
  hgvsp: ENST00000302347.5:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3796G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1740G>A
  hgvsp: ENST00000397857.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1567G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu580Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

21-46309342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309342
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309342
    reference: chr 21
allele count: 16
allele frequency: 2.006018054162487e-4
allele num: 79760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1726G>A
  hgvsp: ENSP00000380950.1:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1726G>A
  hgvsp: ENSP00000380955.1:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1726G>A
  hgvsp: ENSP00000303242.5:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1555G>A
  hgvsp: ENSP00000380952.3:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3782G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1726G>A
  hgvsp: ENSP00000380948.2:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1126G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1726G>A
  hgvsp: ENSP00000347279.4:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1553G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8643
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11433
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu576Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

21-46309343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309343
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309343
    reference: chr 21
allele count: 16
allele frequency: 2.017603591334393e-4
allele num: 79302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1725C>T
  hgvsp: ENST00000397852.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3781C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1725C>T
  hgvsp: ENST00000302347.5:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1725C>T
  hgvsp: ENST00000355153.4:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1554C>T
  hgvsp: ENST00000397854.3:c.1554C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1725C>T
  hgvsp: ENST00000397857.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1725C>T
  hgvsp: ENST00000397850.2:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1552C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1125C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17966
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys575Cys
num of homozygotes: 1
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

21-46309352-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309352
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309352
    reference: chr 21
allele count: 1
allele frequency: 1.351862867030768e-5
allele num: 73972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1545G>C
  hgvsp: ENST00000397854.3:c.1545G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3772G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1716G>C
  hgvsp: ENST00000397852.1:c.1716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1543G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1116G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1716G>C
  hgvsp: ENST00000302347.5:c.1716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1716G>C
  hgvsp: ENST00000355153.4:c.1716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1716G>C
  hgvsp: ENST00000397857.1:c.1716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1716G>C
  hgvsp: ENST00000397850.2:c.1716G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala572Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

21-46309352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309352
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309352
    reference: chr 21
allele count: 1
allele frequency: 1.351862867030768e-5
allele num: 73972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1716G>A
  hgvsp: ENST00000302347.5:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1716G>A
  hgvsp: ENST00000397850.2:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3772G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1716G>A
  hgvsp: ENST00000355153.4:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1716G>A
  hgvsp: ENST00000397852.1:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1545G>A
  hgvsp: ENST00000397854.3:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1716G>A
  hgvsp: ENST00000397857.1:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1543G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1116G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala572Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

21-46309353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309353
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309353
    reference: chr 21
allele count: 2
allele frequency: 2.74589488714372e-5
allele num: 72836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1715C>T
  hgvsp: ENSP00000347279.4:p.Ala572Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1544C>T
  hgvsp: ENSP00000380952.3:p.Ala515Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1115C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3771C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1715C>T
  hgvsp: ENSP00000380948.2:p.Ala572Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1715C>T
  hgvsp: ENSP00000380955.1:p.Ala572Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1715C>T
  hgvsp: ENSP00000380950.1:p.Ala572Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1715C>T
  hgvsp: ENSP00000303242.5:p.Ala572Val
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1542C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17250
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala572Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

21-46309358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309358
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309358
    reference: chr 21
allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1110C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3766C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1539C>T
  hgvsp: ENST00000397854.3:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1537C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1710C>T
  hgvsp: ENST00000302347.5:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1710C>T
  hgvsp: ENST00000397850.2:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1710C>T
  hgvsp: ENST00000397852.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1710C>T
  hgvsp: ENST00000397857.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1710C>T
  hgvsp: ENST00000355153.4:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17597
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5051
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly570Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

21-46309361-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309361
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309361
    reference: chr 21
allele count: 1
allele frequency: 1.538556218844237e-5
allele num: 64996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1107G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1707G>C
  hgvsp: ENSP00000380950.1:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1536G>C
  hgvsp: ENSP00000380952.3:p.Glu512Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1707G>C
  hgvsp: ENSP00000380948.2:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1534G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1707G>C
  hgvsp: ENSP00000380955.1:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1707G>C
  hgvsp: ENSP00000347279.4:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1707G>C
  hgvsp: ENSP00000303242.5:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3763G>C
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34589
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu569Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

21-46309368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309368
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309368
    reference: chr 21
allele count: 2
allele frequency: 3.382492220267893e-5
allele num: 59128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1529G>A
  hgvsp: ENSP00000380952.3:p.Gly510Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1700G>A
  hgvsp: ENSP00000380955.1:p.Gly567Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1700G>A
  hgvsp: ENSP00000347279.4:p.Gly567Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3756G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1700G>A
  hgvsp: ENSP00000380950.1:p.Gly567Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1700G>A
  hgvsp: ENSP00000303242.5:p.Gly567Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1527G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1700G>A
  hgvsp: ENSP00000380948.2:p.Gly567Asp
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1100G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly567Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

21-46309370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309370
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309370
    reference: chr 21
allele count: 1
allele frequency: 1.888574126534466e-5
allele num: 52950
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1698G>A
  hgvsp: ENST00000397850.2:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1698G>A
  hgvsp: ENST00000302347.5:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3754G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1527G>A
  hgvsp: ENST00000397854.3:c.1527G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1698G>A
  hgvsp: ENST00000397857.1:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1098G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1698G>A
  hgvsp: ENST00000355153.4:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1698G>A
  hgvsp: ENST00000397852.1:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1525G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23632
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro566Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-46309371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309371
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309371
    reference: chr 21
allele count: 8
allele frequency: 1.522707373710457e-4
allele num: 52538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1524C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3753C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1097C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1697C>T
  hgvsp: ENSP00000303242.5:p.Pro566Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1697C>T
  hgvsp: ENSP00000347279.4:p.Pro566Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1697C>T
  hgvsp: ENSP00000380955.1:p.Pro566Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1526C>T
  hgvsp: ENSP00000380952.3:p.Pro509Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1697C>T
  hgvsp: ENSP00000380948.2:p.Pro566Leu
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1697C>T
  hgvsp: ENSP00000380950.1:p.Pro566Leu
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15030
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23856
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9581
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro566Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

21-46309380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309380
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309380
    reference: chr 21
allele count: 12
allele frequency: 2.742606390272889e-4
allele num: 43754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1688G>A
  hgvsp: ENSP00000380955.1:p.Arg563His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1088G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3744G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1688G>A
  hgvsp: ENSP00000303242.5:p.Arg563His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1688G>A
  hgvsp: ENSP00000347279.4:p.Arg563His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1515G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1517G>A
  hgvsp: ENSP00000380952.3:p.Arg506His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1688G>A
  hgvsp: ENSP00000380948.2:p.Arg563His
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1688G>A
  hgvsp: ENSP00000380950.1:p.Arg563His
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23707
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg563His
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

21-46309381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309381
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309381
    reference: chr 21
allele count: 5
allele frequency: 1.145108098204471e-4
allele num: 43664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1516C>T
  hgvsp: ENSP00000380952.3:p.Arg506Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1687C>T
  hgvsp: ENSP00000380955.1:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1687C>T
  hgvsp: ENSP00000380948.2:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1687C>T
  hgvsp: ENSP00000303242.5:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1514C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1087C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1687C>T
  hgvsp: ENSP00000347279.4:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3743C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1687C>T
  hgvsp: ENSP00000380950.1:p.Arg563Cys
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23877
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13990
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg563Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

21-46309390-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309390
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309390
    reference: chr 21
allele count: 3
allele frequency: 8.217827206486605e-5
allele num: 36506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1678G>C
  hgvsp: ENSP00000303242.5:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3734G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1505G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1678G>C
  hgvsp: ENSP00000380955.1:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1507G>C
  hgvsp: ENSP00000380952.3:p.Gly503Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1678G>C
  hgvsp: ENSP00000380950.1:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1678G>C
  hgvsp: ENSP00000380948.2:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1078G>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1678G>C
  hgvsp: ENSP00000347279.4:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22582
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18115
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25192
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly560Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

21-46309390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309390
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309390
    reference: chr 21
allele count: 3
allele frequency: 8.217827206486605e-5
allele num: 36506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1678G>A
  hgvsp: ENSP00000303242.5:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1678G>A
  hgvsp: ENSP00000380948.2:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1678G>A
  hgvsp: ENSP00000380955.1:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1678G>A
  hgvsp: ENSP00000347279.4:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3734G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1678G>A
  hgvsp: ENSP00000380950.1:p.Gly560Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1507G>A
  hgvsp: ENSP00000380952.3:p.Gly503Arg
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1505G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1078G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly560Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

21-46309391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309391
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309391
    reference: chr 21
allele count: 18
allele frequency: 5.205923183711244e-4
allele num: 34576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3733C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1677C>T
  hgvsp: ENST00000397850.2:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1677C>T
  hgvsp: ENST00000355153.4:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1677C>T
  hgvsp: ENST00000397852.1:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1677C>T
  hgvsp: ENST00000302347.5:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1504C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1506C>T
  hgvsp: ENST00000397854.3:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1077C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1677C>T
  hgvsp: ENST00000397857.1:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22148
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys559Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-46309402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309402
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309402
    reference: chr 21
allele count: 1
allele frequency: 3.321817698644698e-5
allele num: 30104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1666C>T
  hgvsp: ENSP00000380948.2:p.Leu556Phe
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1066C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1493C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1495C>T
  hgvsp: ENSP00000380952.3:p.Leu499Phe
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1666C>T
  hgvsp: ENSP00000303242.5:p.Leu556Phe
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1666C>T
  hgvsp: ENSP00000347279.4:p.Leu556Phe
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3722C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1666C>T
  hgvsp: ENSP00000380955.1:p.Leu556Phe
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1666C>T
  hgvsp: ENSP00000380950.1:p.Leu556Phe
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu556Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

21-46309414-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309414
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309414
    reference: chr 21
allele count: 1
allele frequency: 4.0154192097655e-5
allele num: 24904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-4C>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-4C>G
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1658-4C>G
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

21-46309419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309419
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309419
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 21596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-9G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-9G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32329
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-46309420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309420
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309420
    reference: chr 21
allele count: 0
allele frequency: 0.0e0
allele num: 21626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-10C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-10C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

21-46309429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309429
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309429
    reference: chr 21
allele count: 40
allele frequency: 1.987083954297069e-3
allele num: 20130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-19G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-19G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34705
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 7.5e0
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 7
num of homozygotes: 2
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

21-46309430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309430
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309430
    reference: chr 21
allele count: 6
allele frequency: 2.984480700358138e-4
allele num: 20104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-20C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-20C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34886
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

21-46309431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309431
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309431
    reference: chr 21
allele count: 1
allele frequency: 5.003001801080648e-5
allele num: 19988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-21C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-21C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

21-46309457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309457
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309457
    reference: chr 21
allele count: 8
allele frequency: 4.366812227074236e-4
allele num: 18320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-47G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-47G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32412
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9717
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

21-46309458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309458
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309458
    reference: chr 21
allele count: 3
allele frequency: 1.638806948541462e-4
allele num: 18306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-48C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-48C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23717
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

21-46309462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309462
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309462
    reference: chr 21
allele count: 1
allele frequency: 5.521201413427562e-5
allele num: 18112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1058-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1658-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1487-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1485-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1658-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1658-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3714-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1658-52G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1658-52G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

21-46309846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309846
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309846
    reference: chr 21
allele count: 1
allele frequency: 8.399408681628814e-6
allele num: 119056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+47A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+47A>G
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

21-46309848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309848
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309848
    reference: chr 21
allele count: 1
allele frequency: 8.397715821296607e-6
allele num: 119080
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+45A>G
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+45A>G
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

21-46309850-TGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309850
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309847
    reference: chr 21
allele count: 1
allele frequency: 8.398421096833796e-6
allele num: 119070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+40_1657+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+40_1657+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+40_1486+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+40_*1484+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+40_3713+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+40_1657+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+40_1657+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+40_1657+42delGGC
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+40_1057+42delGGC
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: TGCC
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

21-46309853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309853
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309853
    reference: chr 21
allele count: 75
allele frequency: 6.301250168033338e-4
allele num: 119024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+40G>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+40G>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14045
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13849
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-46309854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309854
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309854
    reference: chr 21
allele count: 5
allele frequency: 4.198998958648258e-5
allele num: 119076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+39C>T
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+39C>T
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13083
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

21-46309854-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309854
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309854
    reference: chr 21
allele count: 1
allele frequency: 8.397997917296517e-6
allele num: 119076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+39C>A
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+39C>A
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

21-46309856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46309856
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 46309856
    reference: chr 21
allele count: 3
allele frequency: 2.518257365902795e-5
allele num: 119130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000427732
  ensembl transcript: ENST00000523323
  gene symbol: ITGB2
  hgvsc: ENST00000523323.1:c.*1484+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380955
  ensembl transcript: ENST00000397857
  gene symbol: ITGB2
  hgvsc: ENST00000397857.1:c.1657+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000303242
  ensembl transcript: ENST00000302347
  gene symbol: ITGB2
  hgvsc: ENST00000302347.5:c.1657+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380948
  ensembl transcript: ENST00000397850
  gene symbol: ITGB2
  hgvsc: ENST00000397850.2:c.1657+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380952
  ensembl transcript: ENST00000397854
  gene symbol: ITGB2
  hgvsc: ENST00000397854.3:c.1486+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000498666
  gene symbol: ITGB2
  hgvsc: ENST00000498666.1:n.3713+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl transcript: ENST00000475170
  gene symbol: ITGB2
  hgvsc: ENST00000475170.1:n.1057+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000380950
  ensembl transcript: ENST00000397852
  gene symbol: ITGB2
  hgvsc: ENST00000397852.1:c.1657+37T>C
  variant of: http://identifiers.org/hgnc/6155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160255
  ensembl protein: ENSP00000347279
  ensembl transcript: ENST00000355153
  gene symbol: ITGB2
  hgvsc: ENST00000355153.4:c.1657+37T>C
  variant of: http://identifiers.org/hgnc/6155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 1.580045e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.094e0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4902e1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 1.580614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 2.556e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 7838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216989168796398e-4
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

DP
type: SiteQuality
SIO_000300: 1.580012e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 2.243e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

FS
type: SiteQuality
SIO_000300: 1.1509e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 1410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518741267237713e-5
allele num: 65844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.579918e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

QD
type: SiteQuality
SIO_000300: 1.126e1

FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.529674e6

VQSLOD
type: SiteQuality
SIO_000300: -3.445e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

FS
type: SiteQuality
SIO_000300: 1.9837e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576690211907164e-5
allele num: 63424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -3.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 1.9837e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.529674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 2045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7611
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.531606e6

QD
type: SiteQuality
SIO_000300: 9.4e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571338780641106e-5
allele num: 63640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.484e1

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

FS
type: SiteQuality
SIO_000300: 2.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.533863e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQ
type: SiteQuality
SIO_000300: 5.998e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.401e1

FS
type: SiteQuality
SIO_000300: 9.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 1.535237e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.53823e6

FS
type: SiteQuality
SIO_000300: 3.697e0

QD
type: SiteQuality
SIO_000300: 1.077e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1800
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GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563379400913014e-5
allele num: 63964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.091e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.541011e6

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.683987009742693e-5
allele num: 64048
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019575856443719e-4
allele num: 9808
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.34852043212776e-4
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.542681e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556081165193577e-5
allele num: 64264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
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MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 1.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.245e1

DP
type: SiteQuality
SIO_000300: 1.542233e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.108776074859328e-5
allele num: 64334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.051e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 10
allele frequency: 1.009896990506968e-3
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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FS
type: SiteQuality
SIO_000300: 1.096e0

MQRankSum
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.212e1

MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 1.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1690
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GenotypeQuality
all individuals: 408
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555935895441108e-5
allele num: 64270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.585e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.536379e6

MQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 4.348e0

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

QD
type: SiteQuality
SIO_000300: 4.77e0

GenotypeQuality
all individuals: 859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.325e1

FS
type: SiteQuality
SIO_000300: 1.723e0

DP
type: SiteQuality
SIO_000300: 1.53369e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 17

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.396288466055908e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.09217999126256e-4
allele num: 64092
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.5323e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.25e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.207e0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64092
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.5323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.207e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
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variant carriers: 0

GenotypeQuality
all individuals: 364
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 850
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018122581958868e-4
allele num: 9822
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561182752052955e-5
allele num: 64054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 1.125e0

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 1.528789e6

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
all individuals: 848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 2447
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GenotypeQuality
all individuals: 1674
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 389
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GenotypeQuality
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GenotypeQuality
all individuals: 1102
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 279
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GenotypeQuality
all individuals: 363
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561231499406732e-5
allele num: 64052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 1.527831e6

FS
type: SiteQuality
SIO_000300: 1.193e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 462
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 1658
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1101
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.213592233009709e-3
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56941523588311e-5
allele num: 63718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.103e1

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.521015e6

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 272
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7444
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.401146939926671e-5
allele num: 63822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 2.597e0

DP
type: SiteQuality
SIO_000300: 1.521447e6

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.273e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 2813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 363
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GenotypeQuality
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GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 461
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GenotypeQuality
all individuals: 481
bin: 7.5e0
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GenotypeQuality
all individuals: 131
bin: 5.75e1
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GenotypeQuality
all individuals: 1100
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variant carriers: 2

GenotypeQuality
all individuals: 1650
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GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
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GenotypeQuality
all individuals: 41357
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.134992789516584e-5
allele num: 63796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

DP
type: SiteQuality
SIO_000300: 1.520143e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 4.062e0

QD
type: SiteQuality
SIO_000300: 1.611e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeQuality
all individuals: 829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.436633009342267e-5
allele num: 63582
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.930966469428008e-4
allele num: 16224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.362390739428301e-4
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.225e1

DP
type: SiteQuality
SIO_000300: 1.514972e6

GenotypeQuality
all individuals: 3320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
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GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 1714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571585730001571e-5
allele num: 63630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.082234003205524e-4
allele num: 16222
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 1.514238e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.033e0

FS
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

GenotypeQuality
all individuals: 41184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573465084809768e-5
allele num: 63554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.509716e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.276e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 317
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variant carriers: 0

GenotypeQuality
all individuals: 501
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variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 41034
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variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 1695
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variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
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variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577486118122161e-5
allele num: 63392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 7.324e0

DP
type: SiteQuality
SIO_000300: 1.505427e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 527
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
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variant carriers: 1

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
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variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 1644
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 330
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variant carriers: 0

GenotypeQuality
all individuals: 39743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.238303181534623e-5
allele num: 16030
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.487131e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.13e1

FS
type: SiteQuality
SIO_000300: 2.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6982
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.239860227130913e-5
allele num: 16026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.487084e6

FS
type: SiteQuality
SIO_000300: 3.468e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.127e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.128e1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1077
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 35054
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variant carriers: 0

GenotypeQuality
all individuals: 723
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 1511
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GenotypeQuality
all individuals: 364
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1450
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variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.938735944164405e-4
allele num: 15474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 1.413183e6

FS
type: SiteQuality
SIO_000300: 1.751e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.968e0

GenotypeQuality
all individuals: 1502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.5e0
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GenotypeQuality
all individuals: 8652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
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GenotypeQuality
all individuals: 1065
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
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GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.257545271629779e-4
allele num: 7952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

FS
type: SiteQuality
SIO_000300: 1.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 1.399354e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 561
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 34019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.102292768959436e-4
allele num: 9072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.994838666711065e-5
allele num: 60062
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.912411550965768e-4
allele num: 10458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 1.390542e6

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1876
bin: 9.75e1
variant carriers: 854

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 3

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 574
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 3

Latino
type: Population
allele count: 8
allele frequency: 7.95070562512423e-4
allele num: 10062
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.464953797610998e-3
allele num: 8874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 513
allele frequency: 8.772829878924688e-3
allele num: 58476
num of homozygotes: 1

South Asian
type: Population
allele count: 14
allele frequency: 9.281357730045081e-4
allele num: 15084
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 311
allele frequency: 6.310876623376624e-2
allele num: 4928
num of homozygotes: 9

Other
type: Population
allele count: 13
allele frequency: 1.752021563342318e-2
allele num: 742
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.34513e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

QD
type: SiteQuality
SIO_000300: 1.397e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 11467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 315
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 1001
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.712211492363537e-5
allele num: 58404
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.972130059721301e-4
allele num: 15070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.97377309755613e-4
allele num: 10066
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.124e0

DP
type: SiteQuality
SIO_000300: 1.334537e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 544
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 310
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GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 1328
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 864
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 721
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5320
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variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.13045444268596e-4
allele num: 8846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.4331227684702e-5
allele num: 58256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 4.495e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 1.331372e6

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 1448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 806
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GenotypeQuality
all individuals: 5054
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13416
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 706
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 280
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GenotypeQuality
all individuals: 1032
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variant carriers: 1

GenotypeQuality
all individuals: 310
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.720430107526882e-5
allele num: 14880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.993e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.011e1

DP
type: SiteQuality
SIO_000300: 1.291877e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

GenotypeQuality
all individuals: 1026
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 993
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variant carriers: 0

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 3634
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variant carriers: 0

GenotypeQuality
all individuals: 904
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variant carriers: 0

GenotypeQuality
all individuals: 2083
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 629
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GenotypeQuality
all individuals: 1000
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variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.922929005461118e-5
allele num: 52004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

QD
type: SiteQuality
SIO_000300: 3.097e1

VQSLOD
type: SiteQuality
SIO_000300: -2.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.474e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.140292e6

GenotypeQuality
all individuals: 29194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2300
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GenotypeQuality
all individuals: 596
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1065
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12960
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.897710808461316e-4
allele num: 6902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.432624113475177e-4
allele num: 6768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.284878672942467e-4
allele num: 43766
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.742160278745645e-3
allele num: 574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

FS
type: SiteQuality
SIO_000300: 2.448e0

DP
type: SiteQuality
SIO_000300: 9.42632e5

QD
type: SiteQuality
SIO_000300: 1.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 588
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 825
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 11904
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.677484600533236e-4
allele num: 43508
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 1.259e0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 9.39777e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32248
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GenotypeQuality
all individuals: 3134
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.481512730160306e-5
allele num: 40298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
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SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.057e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

DP
type: SiteQuality
SIO_000300: 8.76661e5

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.481512730160306e-5
allele num: 40298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.025111381125962e-4
allele num: 4938
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.676164934629568e-4
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.139e1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 2.125e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.821670428893905e-5
allele num: 35440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: -1.01e0

DP
type: SiteQuality
SIO_000300: 7.97761e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.859757492564631e-5
allele num: 34968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.872e1

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

DP
type: SiteQuality
SIO_000300: 7.93563e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.397537379067722e-4
allele num: 4548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2208
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 7.44233e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.221689413500554e-5
allele num: 10844
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.597e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.851166234727879e-4
allele num: 10804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.170577045022194e-4
allele num: 3154
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.127115146512588e-4
allele num: 4846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.083815028901734e-4
allele num: 27680
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.9e-1

ReadPosRankSum
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MQ
type: SiteQuality
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DP
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MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1230
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.428305730227615e-5
allele num: 22582
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.086312462966621e-3
allele num: 10126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

QD
type: SiteQuality
SIO_000300: 1.403e1

FS
type: SiteQuality
SIO_000300: 7.105e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

DP
type: SiteQuality
SIO_000300: 6.47855e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2346
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.978630787495053e-4
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.332267519317879e-4
allele num: 22518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 1.283e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.45437e5

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.641137855579869e-4
allele num: 18280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

DP
type: SiteQuality
SIO_000300: 5.97009e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 4.189e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 565
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.470459518599563e-5
allele num: 18280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.094679514034353e-4
allele num: 9548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

FS
type: SiteQuality
SIO_000300: 4.189e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

DP
type: SiteQuality
SIO_000300: 5.97009e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 5.835667600373483e-4
allele num: 17136
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.621135469364812e-4
allele num: 3558
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.382978723404255e-4
allele num: 9400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.137e1

MQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.86276e5

FS
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.974473427256242e-5
allele num: 14338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.064e1

DP
type: SiteQuality
SIO_000300: 5.37512e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.15e0

BaseQRankSum
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SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 4.73141e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 156
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.457e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 557
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GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.792e0

QD
type: SiteQuality
SIO_000300: 1.531e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 4.37614e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1064
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33086
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1103
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 562
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3548
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 5

African
type: Population
allele count: 5
allele frequency: 1.970055161544523e-3
allele num: 2538
num of homozygotes: 1

South Asian
type: Population
allele count: 2
allele frequency: 2.474634991338777e-4
allele num: 8082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 3.555664541441883e-3
allele num: 8156
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.302521008403362e-3
allele num: 476
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.4e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.140000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.573e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.12572e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.369668246445498e-3
allele num: 2532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.11219e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.499e-1

QD
type: SiteQuality
SIO_000300: 9.73e0

FS
type: SiteQuality
SIO_000300: 2.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.241927471435668e-4
allele num: 8052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.436e0

FS
type: SiteQuality
SIO_000300: 2.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 4.08695e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 2.877e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23396
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 8
allele frequency: 3.536693191865605e-3
allele num: 2262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 3.59664e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.49e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9476
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.266143327424664e-4
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.834467120181406e-4
allele num: 7056
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.59858e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.459999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.668e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.734e0

GenotypeQuality
all individuals: 342
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11828
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21240
bin: 7.5e0
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GenotypeQuality
all individuals: 1590
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.269035532994924e-4
allele num: 7880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.823e0

FS
type: SiteQuality
SIO_000300: 2.526e0

MQRankSum
type: SiteQuality
SIO_000300: -1.391e0

QD
type: SiteQuality
SIO_000300: 8.75e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: -2.186e0

DP
type: SiteQuality
SIO_000300: 3.60758e5

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13126
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.128963e6

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.078e0

FS
type: SiteQuality
SIO_000300: 3.322e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.86e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
all individuals: 5688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.033484911120298e-4
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 4.649e0

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 2.129151e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.01e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

GenotypeQuality
all individuals: 8530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.736e1

DP
type: SiteQuality
SIO_000300: 2.129489e6

FS
type: SiteQuality
SIO_000300: 1.004e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.627e1

MQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
all individuals: 838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13138
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738223535546671e-4
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.117704637220115e-5
allele num: 65384
num of homozygotes: 0

African
type: Population
allele count: 69
allele frequency: 7.138423339540658e-3
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.372e0

DP
type: SiteQuality
SIO_000300: 2.130651e6

QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 331
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15802
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.586174213471122e-5
allele num: 65414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 3.352e0

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 2.128762e6

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15802
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.128762e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 3.352e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
all individuals: 313
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13081
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 8.75e1
variant carriers: 0