X-153736667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736667
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736667
    reference: chr 0
allele count: 1
allele frequency: 1.87863986473793e-4
allele num: 5323
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.287G>A
  hgvsp: ENSP00000358655.3:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*172G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.287G>A
  hgvsp: ENSP00000358657.1:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*227G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.287G>A
  hgvsp: ENSP00000352955.5:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2953G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.287G>A
  hgvsp: ENSP00000396845.1:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.287G>A
  hgvsp: ENSP00000416146.2:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.287G>A
  hgvsp: ENSP00000396243.2:p.Ser96Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.173G>A
  hgvsp: ENSP00000377202.1:p.Ser58Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*180G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser96Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-153736684-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736685
    reference: chr 0
allele count: 11
allele frequency: 8.442056792018419e-3
allele num: 1303
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-7dupC
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: c.276-7dupC
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-153736684-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736686
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1303
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-8_162-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-8_*256-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-8_*216-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-8_*161-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-8_2942-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-8_152-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-8_*161-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-8_*256-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-8_276-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-8_*169-7dupCC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-8_*161-7dupCC
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.276-8_276-7dupCC
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-153736684-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736683
    reference: chr 0
allele count: 49
allele frequency: 3.760552570990023e-2
allele num: 1303
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-7delC
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-7delC
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.276-7delC
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-153736687-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736687
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-9C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

X-153736688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736688
    reference: chr 0
allele count: 1
allele frequency: 2.105706464518846e-4
allele num: 4749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-10C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-10C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

X-153736688-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736688
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4749
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-10C>G
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-153736691-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736691
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736691
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 5048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-13C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-13C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

X-153736694-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736694
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736694
    reference: chr 0
allele count: 88
allele frequency: 5.559065066329753e-2
allele num: 1583
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-16A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-16A>C
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32783
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-153736695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736695
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736695
    reference: chr 0
allele count: 3
allele frequency: 4.749841671944268e-4
allele num: 6316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-17C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-17C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33627
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153736697-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736697
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-19C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-19C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-153736699-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736699
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736699
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-21C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-21C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13693
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-153736701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736701
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-23C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

X-153736701-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736701
    reference: chr 0
allele count: 1
allele frequency: 1.386577925679423e-4
allele num: 7212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-23C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-23C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

X-153736703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736703
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7817
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-25G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-25G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15810
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33150
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-153736715-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736715
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736715
    reference: chr 0
allele count: 2
allele frequency: 1.595150741745095e-4
allele num: 12538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-37T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-37T>C
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS

X-153736724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736724
    reference: chr 0
allele count: 1
allele frequency: 5.852402411189793e-5
allele num: 17087
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-46G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-153736725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736725
    reference: chr 0
allele count: 3
allele frequency: 1.629018245004344e-4
allele num: 18416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-47C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-47C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-153736726-TCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736726
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736723
    reference: chr 0
allele count: 1
allele frequency: 5.208333333333334e-5
allele num: 19200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-51_*161-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-51_*256-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-51_152-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-51_*161-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-51_*161-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-51_*169-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-51_2942-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-51_*256-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-51_*216-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-51_276-49delCAG
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-51_162-49delCAG
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TCTG
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153736727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736727
    reference: chr 0
allele count: 1
allele frequency: 4.981816370248592e-5
allele num: 20073
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*161-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*169-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*161-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*256-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*216-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*256-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2942-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*161-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.162-49G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.276-49G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31692
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153736773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736773
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736773
    reference: chr 0
allele count: 2
allele frequency: 2.901115478901638e-5
allele num: 68939
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*160+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.161+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*160+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*160+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*168+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*215+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-95A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*255+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2941+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.275+32A>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*255+32A>G
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

X-153736782-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736782
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736782
    reference: chr 0
allele count: 1
allele frequency: 1.45123136981729e-5
allele num: 68907
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2941+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*160+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*160+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*255+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*255+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.161+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*168+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*215+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*160+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.275+23G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-104G>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-153736807-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736807
    reference: chr 0
allele count: 2
allele frequency: 2.918855808523059e-5
allele num: 68520
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.273G>T
  hgvsp: ENSP00000416146.2:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.273G>T
  hgvsp: ENSP00000358655.3:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2939G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.273G>T
  hgvsp: ENSP00000352955.5:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*213G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*158G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.545G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*158G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*253G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.273G>T
  hgvsp: ENSP00000396845.1:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*253G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.159G>T
  hgvsp: ENSP00000377202.1:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*158G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-129G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.273G>T
  hgvsp: ENSP00000358657.1:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.273G>T
  hgvsp: ENSP00000396243.2:p.Lys91Asn
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*166G>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys91Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-153736816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736816
    reference: chr 0
allele count: 50
allele frequency: 7.370500309561013e-4
allele num: 67838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.536C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.264C>T
  hgvsp: ENST00000369641.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.264C>T
  hgvsp: ENST00000434658.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.264C>T
  hgvsp: ENST00000359889.5:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*149C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.150C>T
  hgvsp: ENST00000393572.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.264C>T
  hgvsp: ENST00000369643.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.264C>T
  hgvsp: ENST00000426266.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.264C>T
  hgvsp: ENST00000447601.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2930C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-138C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*204C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Leu88Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

X-153736839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736839
    reference: chr 0
allele count: 4
allele frequency: 6.364865940011139e-5
allele num: 62845
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.241G>A
  hgvsp: ENSP00000416146.2:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2907G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*126G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.241G>A
  hgvsp: ENSP00000352955.5:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.241G>A
  hgvsp: ENSP00000358655.3:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*221G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.241G>A
  hgvsp: ENSP00000358657.1:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.513G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.241G>A
  hgvsp: ENSP00000396845.1:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.127G>A
  hgvsp: ENSP00000377202.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*221G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*181G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-161G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.241G>A
  hgvsp: ENSP00000396243.2:p.Val81Ile
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val81Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

X-153736840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736840
    reference: chr 0
allele count: 3
allele frequency: 4.768793018487021e-5
allele num: 62909
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.240C>T
  hgvsp: ENST00000434658.2:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2906C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.240C>T
  hgvsp: ENST00000369643.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.240C>T
  hgvsp: ENST00000369641.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*125C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.240C>T
  hgvsp: ENST00000447601.2:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*220C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.240C>T
  hgvsp: ENST00000359889.5:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*220C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.126C>T
  hgvsp: ENST00000393572.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.240C>T
  hgvsp: ENST00000426266.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.512C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*180C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-162C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn80Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-153736845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736845
    reference: chr 0
allele count: 1
allele frequency: 1.649294102124291e-5
allele num: 60632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*120G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-167G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.507G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.235G>A
  hgvsp: ENSP00000396243.2:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.121G>A
  hgvsp: ENSP00000377202.1:p.Ala41Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2901G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*120G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*120G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.235G>A
  hgvsp: ENSP00000358657.1:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.235G>A
  hgvsp: ENSP00000358655.3:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.235G>A
  hgvsp: ENSP00000396845.1:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.235G>A
  hgvsp: ENSP00000352955.5:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*175G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*128G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.235G>A
  hgvsp: ENSP00000416146.2:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala79Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-153736846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736846
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736846
    reference: chr 0
allele count: 1
allele frequency: 1.648641519388024e-5
allele num: 60656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.234C>T
  hgvsp: ENST00000434658.2:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*119C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-168C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*119C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.234C>T
  hgvsp: ENST00000426266.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.234C>T
  hgvsp: ENST00000369643.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.234C>T
  hgvsp: ENST00000447601.2:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*174C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.506C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.234C>T
  hgvsp: ENST00000369641.3:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.120C>T
  hgvsp: ENST00000393572.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.234C>T
  hgvsp: ENST00000359889.5:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2900C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*119C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala78Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

X-153736852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736852
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736852
    reference: chr 0
allele count: 3
allele frequency: 5.220659891410274e-5
allele num: 57464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.228C>T
  hgvsp: ENST00000359889.5:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.228C>T
  hgvsp: ENST00000369643.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.228C>T
  hgvsp: ENST00000369641.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-174C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.114C>T
  hgvsp: ENST00000393572.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.500C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.228C>T
  hgvsp: ENST00000447601.2:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.228C>T
  hgvsp: ENST00000434658.2:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.228C>T
  hgvsp: ENST00000426266.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*121C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*113C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*168C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2894C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser76Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-153736858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736858
    reference: chr 0
allele count: 5
allele frequency: 9.043553754883519e-5
allele num: 55288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-180G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.222G>A
  hgvsp: ENST00000447601.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.222G>A
  hgvsp: ENST00000369641.3:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.222G>A
  hgvsp: ENST00000369643.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.222G>A
  hgvsp: ENST00000434658.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*202G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.494G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.222G>A
  hgvsp: ENST00000426266.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*202G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*107G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*107G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.108G>A
  hgvsp: ENST00000393572.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.222G>A
  hgvsp: ENST00000359889.5:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*107G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2888G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val74Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

X-153736860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736860
    reference: chr 0
allele count: 5
allele frequency: 9.235145268835079e-5
allele num: 54141
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*200G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.220G>A
  hgvsp: ENSP00000396243.2:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.220G>A
  hgvsp: ENSP00000352955.5:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.220G>A
  hgvsp: ENSP00000396845.1:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*113G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.220G>A
  hgvsp: ENSP00000358657.1:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*200G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.220G>A
  hgvsp: ENSP00000358655.3:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.106G>A
  hgvsp: ENSP00000377202.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-182G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.492G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*105G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.220G>A
  hgvsp: ENSP00000416146.2:p.Val74Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2886G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*160G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*105G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*105G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21092
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val74Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-153736876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736876
    reference: chr 0
allele count: 1
allele frequency: 2.085897248701529e-5
allele num: 47941
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.204G>A
  hgvsp: ENST00000369641.3:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.204G>A
  hgvsp: ENST00000359889.5:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2870G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.204G>A
  hgvsp: ENST00000426266.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.204G>A
  hgvsp: ENST00000369643.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.476G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*97G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.90G>A
  hgvsp: ENST00000393572.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-198G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.204G>A
  hgvsp: ENST00000447601.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*89G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*144G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.204G>A
  hgvsp: ENST00000434658.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu68Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-153736888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736888
    reference: chr 0
allele count: 1
allele frequency: 2.370791844476055e-5
allele num: 42180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.192G>A
  hgvsp: ENST00000369643.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.192G>A
  hgvsp: ENST00000426266.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.192G>A
  hgvsp: ENST00000434658.2:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.78G>A
  hgvsp: ENST00000393572.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2858G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.192G>A
  hgvsp: ENST00000447601.2:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.192G>A
  hgvsp: ENST00000369641.3:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.192G>A
  hgvsp: ENST00000359889.5:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-210G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.464G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*77G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*85G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro64Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153736896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736896
    reference: chr 0
allele count: 4
allele frequency: 1.03335141698313e-4
allele num: 38709
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.184C>T
  hgvsp: ENSP00000396845.1:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.184C>T
  hgvsp: ENSP00000358657.1:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.70C>T
  hgvsp: ENSP00000377202.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2850C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.184C>T
  hgvsp: ENSP00000396243.2:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.456C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*69C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*124C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*77C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.184C>T
  hgvsp: ENSP00000352955.5:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.184C>T
  hgvsp: ENSP00000416146.2:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.184C>T
  hgvsp: ENSP00000358655.3:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-218C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro62Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153736907-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736907
    reference: chr 0
allele count: 2
allele frequency: 5.698655117392296e-5
allele num: 35096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.173A>C
  hgvsp: ENSP00000352955.5:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*66A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.59A>C
  hgvsp: ENSP00000377202.1:p.Lys20Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*58A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.173A>C
  hgvsp: ENSP00000358657.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.173A>C
  hgvsp: ENSP00000358655.3:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.59A>C
  hgvsp: ENSP00000408973.1:p.Lys20Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*153A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*153A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*58A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*113A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2839A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*58A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.173A>C
  hgvsp: ENSP00000396243.2:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.445A>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.173A>C
  hgvsp: ENSP00000396845.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.173A>C
  hgvsp: ENSP00000416146.2:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-229A>C
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys58Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-153736909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736909
    reference: chr 0
allele count: 1
allele frequency: 2.926715055022243e-5
allele num: 34168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.171C>T
  hgvsp: ENST00000359889.5:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.171C>T
  hgvsp: ENST00000369641.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*56C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2837C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.171C>T
  hgvsp: ENST00000434658.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.171C>T
  hgvsp: ENST00000426266.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*56C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-231C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*56C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.57C>T
  hgvsp: ENST00000393572.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.171C>T
  hgvsp: ENST00000447601.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.171C>T
  hgvsp: ENST00000369643.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.443C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.57C>T
  hgvsp: ENST00000442929.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*111C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr57Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-153736911-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736911
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736911
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 33737
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*54T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*149T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.169T>C
  hgvsp: ENSP00000396243.2:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*109T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*54T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.55T>C
  hgvsp: ENSP00000408973.1:p.Tyr19His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*149T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.169T>C
  hgvsp: ENSP00000358655.3:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*54T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.169T>C
  hgvsp: ENSP00000358657.1:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.55T>C
  hgvsp: ENSP00000377202.1:p.Tyr19His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.169T>C
  hgvsp: ENSP00000352955.5:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-233T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2835T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.169T>C
  hgvsp: ENSP00000416146.2:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.169T>C
  hgvsp: ENSP00000396845.1:p.Tyr57His
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.441T>C
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*62T>C
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr57His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

X-153736920-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736920
    reference: chr 0
allele count: 1
allele frequency: 3.421845058855735e-5
allele num: 29224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-242G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.46G>T
  hgvsp: ENSP00000377202.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*45G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.160G>T
  hgvsp: ENSP00000358657.1:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*53G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.160G>T
  hgvsp: ENSP00000416146.2:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.160G>T
  hgvsp: ENSP00000352955.5:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*45G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.160G>T
  hgvsp: ENSP00000396243.2:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*140G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.160G>T
  hgvsp: ENSP00000358655.3:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2826G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.160G>T
  hgvsp: ENSP00000396845.1:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.432G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.46G>T
  hgvsp: ENSP00000408973.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*100G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*140G>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala54Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

X-153736922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736922
    reference: chr 0
allele count: 2
allele frequency: 7.04870656234581e-5
allele num: 28374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.44G>A
  hgvsp: ENSP00000377202.1:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.158G>A
  hgvsp: ENSP00000396243.2:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.158G>A
  hgvsp: ENSP00000396845.1:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.158G>A
  hgvsp: ENSP00000352955.5:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.158G>A
  hgvsp: ENSP00000358657.1:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-244G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.44G>A
  hgvsp: ENSP00000408973.1:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.158G>A
  hgvsp: ENSP00000358655.3:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.158G>A
  hgvsp: ENSP00000416146.2:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.430G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2824G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*43G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*98G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg53Gln
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153736923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736923
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736923
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 27583
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.157C>T
  hgvsp: ENSP00000396845.1:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2823C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-245C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.43C>T
  hgvsp: ENSP00000377202.1:p.Arg15Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.157C>T
  hgvsp: ENSP00000358657.1:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.157C>T
  hgvsp: ENSP00000358655.3:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.157C>T
  hgvsp: ENSP00000416146.2:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.157C>T
  hgvsp: ENSP00000396243.2:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.43C>T
  hgvsp: ENSP00000408973.1:p.Arg15Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.157C>T
  hgvsp: ENSP00000352955.5:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*50C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.429C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*42C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg53Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-153736925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736925
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736925
    reference: chr 0
allele count: 1
allele frequency: 3.664614482556435e-5
allele num: 27288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.155C>T
  hgvsp: ENSP00000416146.2:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.41C>T
  hgvsp: ENSP00000377202.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.427C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.155C>T
  hgvsp: ENSP00000396243.2:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.155C>T
  hgvsp: ENSP00000358655.3:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*95C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.155C>T
  hgvsp: ENSP00000358657.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.155C>T
  hgvsp: ENSP00000396845.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.41C>T
  hgvsp: ENSP00000408973.1:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.155C>T
  hgvsp: ENSP00000352955.5:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-247C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2821C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*40C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro52Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153736928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736928
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 25348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2818C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152C>T
  hgvsp: ENSP00000352955.5:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152C>T
  hgvsp: ENSP00000396845.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152C>T
  hgvsp: ENSP00000396243.2:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152C>T
  hgvsp: ENSP00000358655.3:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38C>T
  hgvsp: ENSP00000408973.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38C>T
  hgvsp: ENSP00000377202.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152C>T
  hgvsp: ENSP00000416146.2:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-250C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152C>T
  hgvsp: ENSP00000358657.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala51Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-153736959-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736959
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*61C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2787C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*101C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-281C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*14C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-31C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*101C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31327
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-153736969-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736969
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736969
    reference: chr 0
allele count: 1
allele frequency: 6.833868653044489e-5
allele num: 14633
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*91C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*51C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*91C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.*4C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2777C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-41C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-291C>G
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-153736990-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736990
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736990
    reference: chr 0
allele count: 11
allele frequency: 8.50800525949416e-4
allele num: 12929
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*70C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-7C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-312C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-7C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*70C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2756C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-62C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-62C>G
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29956
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: c.*37-7C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-153736991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736991
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736991
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2755C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-8C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-8C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-313C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-63C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*37-8C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-153736992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153736992
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153736992
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12867
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-314C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2754C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-64C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-9C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-9C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-64C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-153737017-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737017
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737017
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11593
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*43C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2729C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-34C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*43C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-339C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-89C>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-34C>G
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-153737018-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737018
    reference: chr 0
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-35T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2728T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*42T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*42T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-340T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-90T>G
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-35T>G
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-153737029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737029
    reference: chr 0
allele count: 1
allele frequency: 9.03750564844103e-5
allele num: 11065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2717C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-46C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-46C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-351C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-101C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-101C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-153737038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737038
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737038
    reference: chr 0
allele count: 1
allele frequency: 9.253261774775608e-5
allele num: 10807
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-360C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2708C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-55C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-55C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-110C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-110C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

X-153737051-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737051
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737051
    reference: chr 0
allele count: 1
allele frequency: 9.46431951542684e-5
allele num: 10566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-68C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-68C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*9C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2695C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-373C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-123C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

X-153737055-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737055
    reference: chr 0
allele count: 145
allele frequency: 1.382268827454719e-2
allele num: 10490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2691C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-72C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-72C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-377C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-127C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-127C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 3
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-153737058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737058
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737058
    reference: chr 0
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-75C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2688C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-380C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-130C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-75C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-130C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-153737080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737080
    reference: chr 0
allele count: 1
allele frequency: 9.937394415184339e-5
allele num: 10063
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-97G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.214G>A
  hgvsp: ENSP00000415843.1:p.Val72Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-402G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.100G>A
  hgvsp: ENSP00000397396.1:p.Val34Met
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-152G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2666G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-97G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-152G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val72Met
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

X-153737109-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737109
    reference: chr 0
allele count: 1
allele frequency: 1.017811704834606e-4
allele num: 9825
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-126G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2637G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.185G>T
  hgvsp: ENSP00000415843.1:p.Gly62Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.71G>T
  hgvsp: ENSP00000397396.1:p.Gly24Val
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-126G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-181G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.578G>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-431G>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly24Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

X-153737114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737114
    reference: chr 0
allele count: 1
allele frequency: 1.019471913548782e-4
allele num: 9809
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.180C>T
  hgvsp: ENST00000416319.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.66C>T
  hgvsp: ENST00000412894.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-131C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-131C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2632C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-436C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.573C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-186C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-186C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro22Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-153737152-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737152
    reference: chr 0
allele count: 32
allele frequency: 3.599145203014284e-3
allele num: 8891
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.152-10C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-169C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2594C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.38-10C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-169C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.545-10C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-474C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-224C>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-224C>A
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153737181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737181
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737181
    reference: chr 0
allele count: 1
allele frequency: 1.278281989006775e-4
allele num: 7823
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.38-39C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-198C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2565C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-503C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.545-39C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-198C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-253C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.152-39C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

X-153737187-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153737187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153737187
    reference: chr 0
allele count: 1
allele frequency: 1.298701298701299e-4
allele num: 7700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000469041
  gene symbol: FAM3A
  hgvsc: ENST00000469041.1:n.2559A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.152-509A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.38-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.152-204A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*37-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.38-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.424-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*37-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*37-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*37-204A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.152-45A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.545-45A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.152-259A>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.38-45A>T
  variant of: http://identifiers.org/hgnc/13749
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-153740149-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153740149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153740149
    reference: chr 0
allele count: 3
allele frequency: 3.462284184285846e-5
allele num: 86648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.423+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*36+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*36+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.37+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*36+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.37+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.544+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.37+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*36+32C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.151+32C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-153740158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153740158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153740158
    reference: chr 0
allele count: 1
allele frequency: 1.154148007940538e-5
allele num: 86644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*36+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.37+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*36+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.37+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.423+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*36+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*36+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.37+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.544+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.151+23G>A
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-153740167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153740167
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153740167
    reference: chr 0
allele count: 1
allele frequency: 1.154214614665451e-5
allele num: 86639
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396845
  ensembl transcript: ENST00000426266
  gene symbol: FAM3A
  hgvsc: ENST00000426266.1:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000397396
  ensembl transcript: ENST00000412894
  gene symbol: FAM3A
  hgvsc: ENST00000412894.1:c.37+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000408973
  ensembl transcript: ENST00000442929
  gene symbol: FAM3A
  hgvsc: ENST00000442929.1:c.37+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000377202
  ensembl transcript: ENST00000393572
  gene symbol: FAM3A
  hgvsc: ENST00000393572.1:c.37+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000320521
  ensembl transcript: ENST00000322269
  gene symbol: FAM3A
  hgvsc: ENST00000322269.6:c.*36+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358655
  ensembl transcript: ENST00000369641
  gene symbol: FAM3A
  hgvsc: ENST00000369641.3:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000352955
  ensembl transcript: ENST00000359889
  gene symbol: FAM3A
  hgvsc: ENST00000359889.5:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000404171
  ensembl transcript: ENST00000449971
  gene symbol: FAM3A
  hgvsc: ENST00000449971.1:c.*36+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000492763
  gene symbol: FAM3A
  hgvsc: ENST00000492763.1:n.544+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000358657
  ensembl transcript: ENST00000369643
  gene symbol: FAM3A
  hgvsc: ENST00000369643.1:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000401367
  ensembl transcript: ENST00000440318
  gene symbol: FAM3A
  hgvsc: ENST00000440318.1:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl transcript: ENST00000497506
  gene symbol: FAM3A
  hgvsc: ENST00000497506.1:n.423+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000396243
  ensembl transcript: ENST00000434658
  gene symbol: FAM3A
  hgvsc: ENST00000434658.2:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000407870
  ensembl transcript: ENST00000457212
  gene symbol: FAM3A
  hgvsc: ENST00000457212.1:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000393086
  ensembl transcript: ENST00000419205
  gene symbol: FAM3A
  hgvsc: ENST00000419205.1:c.*36+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000415843
  ensembl transcript: ENST00000416319
  gene symbol: FAM3A
  hgvsc: ENST00000416319.1:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000416146
  ensembl transcript: ENST00000447601
  gene symbol: FAM3A
  hgvsc: ENST00000447601.2:c.151+14C>T
  variant of: http://identifiers.org/hgnc/13749
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071889
  ensembl protein: ENSP00000406340
  ensembl transcript: ENST00000421517
  gene symbol: FAM3A
  hgvsc: ENST00000421517.1:c.*36+14C>T
  variant of: http://identifiers.org/hgnc/13749
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum

GenotypeDepth
all individuals: 186
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1183
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 429
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33527
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31668
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.116207951070336e-4
allele num: 1635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2973
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.074e1

DP
type: SiteQuality
SIO_000300: 1.68571e5

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.746e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.550000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 568
bin: 1.75e1
variant carriers: 6

GenotypeDepth
all individuals: 31655
bin: 2.5e0
variant carriers: 3

GenotypeDepth
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8880
bin: 7.5e0
variant carriers: 9

GenotypeDepth
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 209
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14356
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1886
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24027
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 3.717472118959108e-3
allele num: 269
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.095890410958904e-2
allele num: 730
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.785714285714286e-2
allele num: 112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 2.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

QD
type: SiteQuality
SIO_000300: 3.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.317e-1

DP
type: SiteQuality
SIO_000300: 1.81285e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 568
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31655
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 209
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14356
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24027
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 123
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 269
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.935e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.317e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.81285e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 3.17e0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 209
bin: 2.25e1
variant carriers: 12

GenotypeDepth
all individuals: 31655
bin: 2.5e0
variant carriers: 12

GenotypeDepth
all individuals: 68
bin: 3.75e1
variant carriers: 11

GenotypeDepth
all individuals: 100
bin: 3.25e1
variant carriers: 12

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8880
bin: 7.5e0
variant carriers: 12

GenotypeDepth
all individuals: 43
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1541
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 19
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14356
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1886
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 24027
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 6
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 3

African
type: Population
allele count: 17
allele frequency: 6.319702602230483e-2
allele num: 269
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 8.163265306122448e-2
allele num: 49
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 3.252032520325204e-2
allele num: 123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 9.589041095890411e-3
allele num: 730
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.517857142857143e-1
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.935e0

QD
type: SiteQuality
SIO_000300: 3.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.317e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.81285e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeDepth
all individuals: 9303
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1750
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30034
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 423
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 167
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.782e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.895e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 1.88195e5

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeDepth
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9452
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34152
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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SIO_000300: 1.89991e5

ReadPosRankSum
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SIO_000300: 1.21e0

FS
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SIO_000300: 0.0e0

QD
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BaseQRankSum
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SIO_000300: 5.46e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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InbreedingCoeff
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SIO_000300: 6.45e-2

BaseQRankSum
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SIO_000300: 5.46e-1

MQRankSum
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SIO_000300: -5.46e-1

FS
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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SIO_000300: 1.21e0

VQSLOD
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SIO_000300: -1.661e0

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.61e-2

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.38e0

ReadPosRankSum
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.96983e5

VQSLOD
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SIO_000300: -1.946e0

QD
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SIO_000300: 5.37e0

GenotypeDepth
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variant carriers: 17

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 1.162790697674419e-1
allele num: 43
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East Asian
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allele frequency: 3.614457831325301e-2
allele num: 166
num of homozygotes: 0

European (Non-Finnish)
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allele count: 40
allele frequency: 4.424778761061947e-2
allele num: 904
num of homozygotes: 0

African
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allele count: 18
allele frequency: 4.986149584487535e-2
allele num: 361
num of homozygotes: 0

South Asian
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allele frequency: 1.847826086956522e-1
allele num: 92
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Other
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allele frequency: 1.818181818181818e-1
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VQSLOD
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SIO_000300: -5.15e1

ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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SIO_000300: 5.954e1

ReadPosRankSum
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SIO_000300: -5.639999999999999e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 8.700696055684454e-4
allele num: 3448
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European (Finnish)
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East Asian
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African
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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VQSLOD
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QD
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InbreedingCoeff
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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East Asian
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Other
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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DP
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ClippingRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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East Asian
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South Asian
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 10590
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FS
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VQSLOD
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MQ
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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African
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Latino
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Other
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European (Non-Finnish)
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DP
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ReadPosRankSum
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MQRankSum
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QD
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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South Asian
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BaseQRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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BaseQRankSum
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SIO_000300: -1.531e0

FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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SIO_000300: 1.48e-1

ReadPosRankSum
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SIO_000300: 1.26e0

MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

African
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Latino
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allele frequency: 1.280737704918033e-4
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.206525730472643e-3
allele num: 38126
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele num: 5985
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FS
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 2
allele frequency: 2.849814762040468e-4
allele num: 7018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.768676088837612e-5
allele num: 34670
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6697
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 1.1196e1

MQRankSum
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SIO_000300: 2.45e-1

InbreedingCoeff
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SIO_000300: -5.6e-3

DP
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SIO_000300: 9.92359e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6691
num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.428163381890888e-4
allele num: 7002
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.768509705517579e-5
allele num: 34671
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 385
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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FS
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SIO_000300: 3.883e0

ClippingRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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African
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allele count: 0
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European (Finnish)
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QD
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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MQRankSum
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QD
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DP
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FS
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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VQSLOD
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.883506343713956e-4
allele num: 3468
num of homozygotes: 0

South Asian
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allele frequency: 5.092514004413513e-4
allele num: 5891
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MQ
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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SIO_000300: -2.31e-1

ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18283
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 6.835269993164731e-4
allele num: 2926
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VQSLOD
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SIO_000300: 1.45e-1

ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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QD
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -8.95e-1

DP
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SIO_000300: 6.15371e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2831
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.636025474835146e-5
allele num: 17743
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2833
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5667
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

DP
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SIO_000300: 6.05057e5

QD
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SIO_000300: 2.494e1

InbreedingCoeff
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SIO_000300: -3.42e-2

MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -6.227e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2771
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4075
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17485
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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FS
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.739452756436177e-5
allele num: 14838
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 5430
num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 1.398503601146773e-4
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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Other
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VQSLOD
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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FS
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DP
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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QD
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VQSLOD
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MQ
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FS
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DP
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5321
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 287
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 11
allele frequency: 2.32705733023059e-3
allele num: 4727
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1897
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.580000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.36e-2

FS
type: SiteQuality
SIO_000300: 1.4467e1

ClippingRankSum
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SIO_000300: 3.58e-1

BaseQRankSum
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SIO_000300: -7.31e-1

ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.18352e5

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5287
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 2.82e0

DP
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SIO_000300: 3.16544e5

InbreedingCoeff
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SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.539e1

GenotypeDepth
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bin: 2.5e0
variant carriers: 5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.779999999999999e-2

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
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QD
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SIO_000300: 1.203e1

BaseQRankSum
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SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.16424e5

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 4.307559767391773e-4
allele num: 4643
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 257
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.67393e5

VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 2.17296827466319e-4
allele num: 4602
num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -7.51e-2

QD
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SIO_000300: 1.933e1

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -6.81e-1

DP
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BaseQRankSum
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SIO_000300: -4.558e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.360717658168083e-4
allele num: 4236
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.3626e5

InbreedingCoeff
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SIO_000300: -7.389999999999999e-2

QD
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SIO_000300: 2.966e1

VQSLOD
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SIO_000300: -1.706e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.193463478833078e-4
allele num: 4559
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.26589e5

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 2.763e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

InbreedingCoeff
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SIO_000300: -6.96e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 25

GenotypeDepth
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GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 12

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 13

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.450980392156863e-4
allele num: 4080
num of homozygotes: 0

South Asian
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allele count: 143
allele frequency: 3.140096618357488e-2
allele num: 4554
num of homozygotes: 3

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 407
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 4.201680672268907e-3
allele num: 238
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.043e0

MQRankSum
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SIO_000300: 8.999999999999999e-3

FS
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SIO_000300: 5.39e-1

ClippingRankSum
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SIO_000300: -1.6e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.97e0

ReadPosRankSum
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SIO_000300: 5.5e-2

InbreedingCoeff
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SIO_000300: -1.82e-2

DP
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SIO_000300: 2.25406e5

QD
type: SiteQuality
SIO_000300: 2.328e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele num: 4541
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East Asian
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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InbreedingCoeff
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DP
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MQ
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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SIO_000300: -5.51e-1

FS
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BaseQRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 391
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.251745102454402e-4
allele num: 4441
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 759
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3887
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -4.81e-2

QD
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SIO_000300: 2.931e1

MQ
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DP
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SIO_000300: 1.98088e5

VQSLOD
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SIO_000300: 9.07e-1

FS
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.257846014901784e-4
allele num: 4429
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 1.97341e5

InbreedingCoeff
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SIO_000300: -4.63e-2

FS
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SIO_000300: 0.0e0

MQ
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VQSLOD
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SIO_000300: -6.361e-1

QD
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SIO_000300: 2.783e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 10

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 2
allele frequency: 5.526388505111909e-4
allele num: 3619
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 1
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allele num: 95
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 7.739938080495357e-4
allele num: 3876
num of homozygotes: 0

African
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allele count: 26
allele frequency: 3.719599427753934e-2
allele num: 699
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 201
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
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SIO_000300: 3.11e-1

DP
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SIO_000300: 1.60473e5

FS
type: SiteQuality
SIO_000300: 6.51e-1

VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.7e-3

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -5.09e-1

ReadPosRankSum
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SIO_000300: 5.5e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 3.157562361856647e-4
allele num: 3167
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 669
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 2.89e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: -4.79e-2

ReadPosRankSum
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DP
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BaseQRankSum
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FS
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VQSLOD
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele count: 1
allele frequency: 3.250975292587776e-4
allele num: 3076
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FS
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SIO_000300: 0.0e0

QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8399
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.036283588887202e-4
allele num: 6587
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.005328239670252e-4
allele num: 9947
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9269
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.003e0

DP
type: SiteQuality
SIO_000300: 1.898435e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.282e0

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.93e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

GenotypeDepth
all individuals: 1375
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2304
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 699
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1383
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 583
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22941
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10694
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 915
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 332
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4095
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 794
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 917
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9949
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8399
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47515
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 8.94e0

VQSLOD
type: SiteQuality
SIO_000300: -1.497e-1

DP
type: SiteQuality
SIO_000300: 1.900872e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.856e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeDepth
all individuals: 407
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1380
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 460
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 916
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 583
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1285
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2297
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12343
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 948
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23081
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 794
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.517680983457277e-4
allele num: 6589
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9269
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47497
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.873e0

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1