X-153697599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697599
    reference: chr 0
allele count: 1
allele frequency: 1.204456489009335e-5
allele num: 83025
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.134+41C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000491066
  gene symbol: PLXNA3
  hgvsc: ENST00000491066.1:n.510C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4594+41C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-153697601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697601
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697601
    reference: chr 0
allele count: 42
allele frequency: 5.062253667120662e-4
allele num: 82967
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000491066
  gene symbol: PLXNA3
  hgvsc: ENST00000491066.1:n.512C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4594+43C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.134+43C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-153697608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697608
    reference: chr 0
allele count: 4
allele frequency: 4.834830116156794e-5
allele num: 82733
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.134+50C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000491066
  gene symbol: PLXNA3
  hgvsc: ENST00000491066.1:n.519C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4594+50C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

X-153697609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697609
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697609
    reference: chr 0
allele count: 1
allele frequency: 1.209979914333422e-5
allele num: 82646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000491066
  gene symbol: PLXNA3
  hgvsc: ENST00000491066.1:n.520G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4594+51G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.134+51G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153697671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697671
    reference: chr 0
allele count: 40
allele frequency: 4.852543339277699e-4
allele num: 82431
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4595-51A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.135-51A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000491066
  gene symbol: PLXNA3
  hgvsc: ENST00000491066.1:n.582A>G
  variant of: http://identifiers.org/hgnc/9101
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-153697704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697704
    reference: chr 0
allele count: 22
allele frequency: 2.650889855526503e-4
allele num: 82991
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.135-18G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4595-18G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9272
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

X-153697710-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697710
    reference: chr 0
allele count: 1
allele frequency: 1.200509015822709e-5
allele num: 83298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.135-12T>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4595-12T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9272
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-153697716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697716
    reference: chr 0
allele count: 1
allele frequency: 1.196444167932903e-5
allele num: 83581
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.135-6C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4595-6C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.4595-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 45961
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-153697725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697725
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84053
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.138G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4598G>A
  hgvsp: ENSP00000358696.3:p.Trp1533Ter
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Trp1533Ter
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8707
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-153697732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697732
    reference: chr 0
allele count: 2
allele frequency: 2.362028037272803e-5
allele num: 84673
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4605G>A
  hgvsp: ENST00000369682.3:c.4605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.145G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln1535Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9279
  num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-153697736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697736
    reference: chr 0
allele count: 3
allele frequency: 3.535067873303168e-5
allele num: 84864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4609C>T
  hgvsp: ENSP00000358696.3:p.Arg1537Cys
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.149C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg1537Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9183
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

X-153697739-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697739
    reference: chr 0
allele count: 1
allele frequency: 1.174025852049262e-5
allele num: 85177
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.152A>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4612A>C
  hgvsp: ENSP00000358696.3:p.Met1538Leu
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Met1538Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6574
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-153697745-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697745
    reference: chr 0
allele count: 1
allele frequency: 1.170439382944357e-5
allele num: 85438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4618C>T
  hgvsp: ENSP00000358696.3:p.Arg1540Cys
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.158C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg1540Cys
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 609
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-153697753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697753
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697753
    reference: chr 0
allele count: 5
allele frequency: 5.83001993866819e-5
allele num: 85763
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4626C>T
  hgvsp: ENST00000369682.3:c.4626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.166C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ile1542Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9691
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-153697762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697762
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697762
    reference: chr 0
allele count: 2
allele frequency: 2.326907191306675e-5
allele num: 85951
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4635T>C
  hgvsp: ENST00000369682.3:c.4635T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.175T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp1545Asp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46778
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

X-153697783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697783
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697783
    reference: chr 0
allele count: 1
allele frequency: 1.162547373805483e-5
allele num: 86018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.196C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4656C>T
  hgvsp: ENST00000369682.3:c.4656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile1552Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46776
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-153697784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697784
    reference: chr 0
allele count: 1
allele frequency: 1.162763656659147e-5
allele num: 86002
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4657G>A
  hgvsp: ENSP00000358696.3:p.Glu1553Lys
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.197G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu1553Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.138077013534027e-5
  allele num: 46771
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-153697784-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697784
    reference: chr 0
allele count: 3
allele frequency: 3.488290969977442e-5
allele num: 86002
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4657G>C
  hgvsp: ENSP00000358696.3:p.Glu1553Gln
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.197G>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu1553Gln
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4511
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

X-153697800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697800
    reference: chr 0
allele count: 3
allele frequency: 3.496870301080533e-5
allele num: 85791
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.213G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4673G>A
  hgvsp: ENSP00000358696.3:p.Arg1558Lys
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg1558Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46681
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

X-153697814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697814
    reference: chr 0
allele count: 8
allele frequency: 9.38218323403856e-5
allele num: 85268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.227G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4687G>A
  hgvsp: ENSP00000358696.3:p.Ala1563Thr
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1563Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4477
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

X-153697823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697823
    reference: chr 0
allele count: 1
allele frequency: 1.180122024617345e-5
allele num: 84737
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4696C>T
  hgvsp: ENSP00000358696.3:p.Gln1566Ter
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.236C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gln1566Ter
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-153697825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697825
    reference: chr 0
allele count: 13
allele frequency: 1.536334306345061e-4
allele num: 84617
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698G>A
  hgvsp: ENST00000369682.3:c.4698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
hgvs: c.4698G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-153697831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697831
    reference: chr 0
allele count: 1
allele frequency: 1.186985886737807e-5
allele num: 84247
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+6G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+6G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.4698+6G>A
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4428
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-153697835-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697834
    reference: chr 0
allele count: 3
allele frequency: 3.574492422076066e-5
allele num: 83928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+14delG
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+14delG
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4424
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: TG
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-153697837-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697837
    reference: chr 0
allele count: 7
allele frequency: 8.349834196149534e-5
allele num: 83834
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+12G>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+12G>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.700680272108843e-3
  allele num: 588
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

X-153697838-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153697838
    reference: chr 0
allele count: 1
allele frequency: 1.193573798667972e-5
allele num: 83782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+13G>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+13G>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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population: East Asian
population: Latino
population: European (Non-Finnish)
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site quality: InbreedingCoeff
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X-153697858-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
allele frequency: 1.220152030943055e-5
allele num: 81957
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
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  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+33C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
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  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+33C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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population: Other
population: Latino
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population: European (Finnish)
population: East Asian
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X-153697861-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697861
    reference: chr 0
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allele count: 3
allele frequency: 3.675074420257011e-5
allele num: 81631
alternate allele: G
annotation: Annotation
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
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  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+36C>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
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population: African
population: Latino
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population: East Asian
population: Other
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X-153697866-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697866
    reference: chr 0
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    type: ExactPosition
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allele count: 1
allele frequency: 1.23002742961168e-5
allele num: 81299
alternate allele: T
annotation: Annotation
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  consequence: intron_variant
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  ensembl protein: ENSP00000358696
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  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+41A>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+41A>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
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filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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X-153697873-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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allele count: 1
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allele num: 80553
alternate allele: G
annotation: Annotation
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  ensembl gene: ENSG00000130827
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
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  ensembl protein: ENSP00000358696
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
canonical: true
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
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  allele num: 44087
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population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-153697876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153697876
    reference: chr 0
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    type: ExactPosition
    position: 24153697876
    reference: chr 0
allele count: 1
allele frequency: 1.254673659381195e-5
allele num: 79702
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4698+51C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.238+51C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Non-Finnish)
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population: Latino
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population: Other
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population: East Asian
population: South Asian
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X-153697983-G-T
type: Variant
location: Region
  begin: Position
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    position: 24153697983
    reference: chr 0
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    type: ExactPosition
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allele count: 0
allele frequency: 0.0e0
allele num: 82888
alternate allele: T
annotation: Annotation
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
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population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
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site quality: QD
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X-153697996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
allele frequency: 1.19852341914761e-5
allele num: 83436
alternate allele: T
annotation: Annotation
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
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  consequence: intron_variant
  ensembl gene: ENSG00000130827
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  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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X-153698005-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
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  ensembl protein: ENSP00000358696
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  variant of: http://identifiers.org/hgnc/9101
canonical: true
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population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

X-153698006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698006
    reference: chr 0
allele count: 31
allele frequency: 3.681491597886111e-4
allele num: 84205
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4699-25C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.239-25C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9173
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

X-153698008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698008
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698008
    reference: chr 0
allele count: 1
allele frequency: 1.183193913650508e-5
allele num: 84517
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.239-23C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4699-23C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9193
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

X-153698009-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698007
    reference: chr 0
allele count: 1
allele frequency: 1.181879424661096e-5
allele num: 84611
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4699-19_4699-18delCT
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.239-19_239-18delCT
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9503
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: CCT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-153698011-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698011
    reference: chr 0
allele count: 1
allele frequency: 1.179523472517103e-5
allele num: 84780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.239-20T>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4699-20T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4433
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

X-153698039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698039
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698039
    reference: chr 0
allele count: 1
allele frequency: 1.155815485615876e-5
allele num: 86519
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4707C>T
  hgvsp: ENST00000369682.3:c.4707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.247C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp1569Asp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4502
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
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site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

X-153698040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698040
    reference: chr 0
allele count: 1
allele frequency: 1.155361454831144e-5
allele num: 86553
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4708G>A
  hgvsp: ENSP00000358696.3:p.Gly1570Ser
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.248G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly1570Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10020
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
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site quality: QD
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X-153698046-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698046
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698046
    reference: chr 0
allele count: 1
allele frequency: 1.153269519086611e-5
allele num: 86710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.254T>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4714T>C
  hgvsp: ENST00000369682.3:c.4714T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu1572Leu
num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 8415
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

X-153698055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698055
    reference: chr 0
allele count: 1
allele frequency: 1.151330938564981e-5
allele num: 86856
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4723T>C
  hgvsp: ENST00000369682.3:c.4723T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.263T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Leu1575Leu
num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 9291
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population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
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X-153698057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698057
    reference: chr 0
allele count: 1
allele frequency: 1.151105636964304e-5
allele num: 86873
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.265G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4725G>A
  hgvsp: ENST00000369682.3:c.4725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu1575Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10097
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
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site quality: DP

X-153698070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698070
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698070
    reference: chr 0
allele count: 1
allele frequency: 1.150099483605332e-5
allele num: 86949
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4738G>A
  hgvsp: ENSP00000358696.3:p.Val1580Met
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.278G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val1580Met
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9293
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population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
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site quality: BaseQRankSum
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X-153698073-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698073
    reference: chr 0
allele count: 2
allele frequency: 2.299908003679853e-5
allele num: 86960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.281T>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4741T>C
  hgvsp: ENSP00000358696.3:p.Ser1581Pro
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
  type: Population
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  allele num: 9294
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
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site quality: QD
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X-153698080-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698080
    reference: chr 0
allele count: 2
allele frequency: 2.299273429596248e-5
allele num: 86984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.288A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4748A>G
  hgvsp: ENSP00000358696.3:p.Tyr1583Cys
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Tyr1583Cys
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population: Latino
  type: Population
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  allele num: 9295
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population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
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site quality: InbreedingCoeff
site quality: QD
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X-153698096-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698096
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698096
    reference: chr 0
allele count: 2
allele frequency: 2.300675248185343e-5
allele num: 86931
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4764C>G
  hgvsp: ENST00000369682.3:c.4764C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.304C>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: synonymous
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser1588Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 628
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
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site quality: ReadPosRankSum
site quality: QD
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X-153698101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698101
    reference: chr 0
allele count: 1
allele frequency: 1.150959900557065e-5
allele num: 86884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.309C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4769C>T
  hgvsp: ENSP00000358696.3:p.Thr1590Ile
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr1590Ile
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population: South Asian
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  allele num: 10093
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population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
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site quality: InbreedingCoeff
site quality: FS
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X-153698107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698107
    reference: chr 0
allele count: 2
allele frequency: 2.303298323198821e-5
allele num: 86832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.315C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4775C>T
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  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Thr1592Ile
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population: European (Finnish)
  type: Population
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  allele num: 4518
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population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: FS
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site quality: QD

X-153698107-CCCGCTCCCTCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698095
    reference: chr 0
allele count: 1
allele frequency: 1.15164916159941e-5
allele num: 86832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsp: ENSP00000358696.3:p.Ser1594_Arg1597del
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ser1594_Arg1597del
num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 9293
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population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CCCGCTCCCTCAG
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-153698109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698109
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allele count: 1
allele frequency: 1.152033915878483e-5
allele num: 86803
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl protein: ENSP00000358696
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  gene symbol: PLXNA3
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  hgvsp: ENSP00000358696.3:p.Arg1593Cys
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.317C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
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hgvs: p.Arg1593Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4515
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

X-153698110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698110
    reference: chr 0
allele count: 1
allele frequency: 1.152724464271305e-5
allele num: 86751
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.318G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4778G>A
  hgvsp: ENSP00000358696.3:p.Arg1593His
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg1593His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4512
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

X-153698112-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698112
    reference: chr 0
allele count: 1
allele frequency: 1.152937107280798e-5
allele num: 86735
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.320T>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4780T>G
  hgvsp: ENSP00000358696.3:p.Ser1594Ala
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser1594Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4510
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-153698116-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698116
    reference: chr 0
allele count: 4
allele frequency: 4.634242417220845e-5
allele num: 86314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4784T>C
  hgvsp: ENSP00000358696.3:p.Leu1595Pro
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.324T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu1595Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.200624324648817e-4
  allele num: 8329
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153698122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698122
    reference: chr 0
allele count: 2
allele frequency: 2.314627287141088e-5
allele num: 86407
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4790G>A
  hgvsp: ENSP00000358696.3:p.Arg1597His
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.330G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg1597His
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9267
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-153698126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698126
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698126
    reference: chr 0
allele count: 7
allele frequency: 8.112932013629726e-5
allele num: 86282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.334C>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4794C>T
  hgvsp: ENST00000369682.3:c.4794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
hgvs: c.4794C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-153698143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698143
    reference: chr 0
allele count: 1
allele frequency: 1.167910491339944e-5
allele num: 85623
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+16G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+16G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.019575856443719e-4
  allele num: 9808
  num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

X-153698146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698146
    reference: chr 0
allele count: 91
allele frequency: 1.064775812037817e-3
allele num: 85464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+19G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+19G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 1.20033609410635e-4
  allele num: 8331
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153698149-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698149
    reference: chr 0
allele count: 1
allele frequency: 1.171673618596804e-5
allele num: 85348
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+22G>T
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+22G>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8318
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-153698152-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698152
    reference: chr 0
allele count: 1
allele frequency: 1.173116854169844e-5
allele num: 85243
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+25A>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+25A>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 6551
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population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
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X-153698152-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24153698152
    reference: chr 0
allele count: 1
allele frequency: 1.173116854169844e-5
allele num: 85243
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+25A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
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  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+25A>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
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  allele num: 8311
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population: Latino
population: Other
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population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
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site quality: VQSLOD
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X-153698158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698158
    reference: chr 0
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    type: ExactPosition
    position: 24153698158
    reference: chr 0
allele count: 1
allele frequency: 1.177786938342854e-5
allele num: 84905
alternate allele: T
annotation: Annotation
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  consequence: intron_variant
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  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
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  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+31C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
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site quality: DP
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site quality: ReadPosRankSum
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site quality: ClippingRankSum
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X-153698162-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698162
    reference: chr 0
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    type: ExactPosition
    position: 24153698162
    reference: chr 0
allele count: 1
allele frequency: 1.182326582248549e-5
allele num: 84579
alternate allele: G
annotation: Annotation
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  consequence: intron_variant
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  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+35C>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+35C>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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population: Other
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site quality: BaseQRankSum
site quality: MQ
site quality: FS
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X-153698162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698162
    reference: chr 0
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    type: ExactPosition
    position: 24153698162
    reference: chr 0
allele count: 5
allele frequency: 5.911632911242744e-5
allele num: 84579
alternate allele: T
annotation: Annotation
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  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
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  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+35C>T
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4419
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-153698163-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698163
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698163
    reference: chr 0
allele count: 1
allele frequency: 1.182955970378782e-5
allele num: 84534
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+36G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+36G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9574
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

X-153698165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698165
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698165
    reference: chr 0
allele count: 1
allele frequency: 1.18375415793648e-5
allele num: 84477
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+38G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+38G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 609
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

X-153698169-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698169
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698169
    reference: chr 0
allele count: 2
allele frequency: 2.370173733734683e-5
allele num: 84382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+42A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+42A>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
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  allele num: 608
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population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
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site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
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X-153698171-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698171
    reference: chr 0
allele count: 1
allele frequency: 1.187366421277606e-5
allele num: 84220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+44C>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+44C>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 477
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  allele frequency: 0.0e0
  allele num: 9510
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153698178-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698178
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698178
    reference: chr 0
allele count: 1
allele frequency: 1.191029168304332e-5
allele num: 83961
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.335+51T>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4795+51T>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.188519029172959e-5
  allele num: 45693
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

X-153698272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698272
    reference: chr 0
allele count: 1
allele frequency: 1.200782910457618e-5
allele num: 83279
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-48G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-48G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4431
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-153698289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698289
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698289
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-31G>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-31G>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
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  allele num: 8294
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population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

X-153698291-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698291
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698291
    reference: chr 0
allele count: 2
allele frequency: 2.394206021428144e-5
allele num: 83535
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-29C>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-29C>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 6610
  num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

X-153698292-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698292
    reference: chr 0
allele count: 409
allele frequency: 4.892227458673237e-3
allele num: 83602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-28T>A
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-28T>A
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 12
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
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  variant carriers: 20
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15227
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25236
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 37764
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 8
num of homozygotes: 5
population: Other
  type: Population
  allele count: 3
  allele frequency: 5.084745762711864e-3
  allele num: 590
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-153698294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698294
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698294
    reference: chr 0
allele count: 1
allele frequency: 1.195643076628765e-5
allele num: 83637
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-26A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-26A>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1979
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 484
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genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

X-153698298-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698298
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698299
    reference: chr 0
allele count: 1
allele frequency: 1.194557595594472e-5
allele num: 83713
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-21dupC
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-21dupC
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9257
  num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

X-153698306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698306
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698306
    reference: chr 0
allele count: 1
allele frequency: 1.189527400763677e-5
allele num: 84067
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-14A>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-14A>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8979
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 482
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genotype quality: GenotypeQuality
  all individuals: 72
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8439
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

X-153698310-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698310
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698310
    reference: chr 0
allele count: 1
allele frequency: 1.187197264697502e-5
allele num: 84232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-10T>C
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-10T>C
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9266
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-153698311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153698311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153698311
    reference: chr 0
allele count: 1
allele frequency: 1.186887269447148e-5
allele num: 84254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl protein: ENSP00000358696
  ensembl transcript: ENST00000369682
  gene symbol: PLXNA3
  hgvsc: ENST00000369682.3:c.4796-9C>G
  variant of: http://identifiers.org/hgnc/9101
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130827
  ensembl transcript: ENST00000493546
  gene symbol: PLXNA3
  hgvsc: ENST00000493546.1:n.336-9C>G
  variant of: http://identifiers.org/hgnc/9101
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.204093919325707e-4
allele num: 8305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45964
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2092e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.268e0

VQSLOD
type: SiteQuality
SIO_000300: -3.677e0

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.588e0

DP
type: SiteQuality
SIO_000300: 1.765988e6

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 2811
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.176468027684673e-5
allele num: 45946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 4.430037817396002e-3
allele num: 9255
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.767073e6

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

FS
type: SiteQuality
SIO_000300: 1.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.283e0

GenotypeQuality
all individuals: 677
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.359673024523161e-5
allele num: 45875
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8283
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6577
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.736111111111111e-3
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.768764e6

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 1.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 1.2214e1

VQSLOD
type: SiteQuality
SIO_000300: -4.53e-1

GenotypeQuality
all individuals: 2898
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45830
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

DP
type: SiteQuality
SIO_000300: 1.771301e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.742e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 706
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 7.689434716699256e-4
allele num: 45517
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.235635734585444e-4
allele num: 8093
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.314994606256742e-4
allele num: 9270
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.665e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.885e1

FS
type: SiteQuality
SIO_000300: 6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 1.839325e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

South Asian
type: Population
allele count: 22
allele frequency: 2.701706987596709e-3
allele num: 8143
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8173
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.49e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

DP
type: SiteQuality
SIO_000300: 1.858946e6

QD
type: SiteQuality
SIO_000300: 2.075e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45855
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.523229246001523e-4
allele num: 6565
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.068000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 1.864949e6

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.941e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.943e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9273
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8229
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.185255422543558e-4
allele num: 8437
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

QD
type: SiteQuality
SIO_000300: 3.17e1

DP
type: SiteQuality
SIO_000300: 1.871313e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8277
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.317e1

VQSLOD
type: SiteQuality
SIO_000300: -1.445e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.880726e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8313
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.317509660427865e-5
allele num: 46323
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.883e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.777e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

DP
type: SiteQuality
SIO_000300: 1.893036e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.155962313778755e-5
allele num: 46383
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.402691013935608e-4
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.329e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 5.26e-1

DP
type: SiteQuality
SIO_000300: 1.897666e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.068947087119188e-4
allele num: 9355
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
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DP
type: SiteQuality
SIO_000300: 1.903488e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.607e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.67e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9511
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
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East Asian
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46581
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.909384e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.078e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

African
type: Population
allele count: 1
allele frequency: 1.194885888397658e-4
allele num: 8369
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.564943685495268e-5
allele num: 46702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.887e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.915504e6

QD
type: SiteQuality
SIO_000300: 1.838e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

Latino
type: Population
allele count: 1
allele frequency: 1.076889941847943e-4
allele num: 9286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
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South Asian
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.918795e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 3.171e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

African
type: Population
allele count: 1
allele frequency: 1.194172438500119e-4
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9871
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.038e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 2.632e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.919923e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
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Other
type: Population
allele count: 0
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allele num: 610
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
SIO_000300: 3.645e0

MQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

QD
type: SiteQuality
SIO_000300: 2.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.919602e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.414231040602083e-5
allele num: 46771
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
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South Asian
type: Population
allele count: 0
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allele num: 9866
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.83e-2

DP
type: SiteQuality
SIO_000300: 1.919602e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

FS
type: SiteQuality
SIO_000300: 3.645e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.070310101320233e-4
allele num: 9771
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.917e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 1.911441e6

QD
type: SiteQuality
SIO_000300: 1.871e1

VQSLOD
type: SiteQuality
SIO_000300: -7.075e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.457584432916461e-5
allele num: 46457
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
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African
type: Population
allele count: 4
allele frequency: 4.80884828083674e-4
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.04602510460251e-4
allele num: 9560
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MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 2.525e0

DP
type: SiteQuality
SIO_000300: 1.888506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.78e1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9375
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46201
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 1.858879e6

East Asian
type: Population
allele count: 13
allele frequency: 1.977186311787072e-3
allele num: 6575
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9339
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46148
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

QD
type: SiteQuality
SIO_000300: 1.663e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 2.824e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.850568e6

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.175615699242886e-5
allele num: 45964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 9235
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QD
type: SiteQuality
SIO_000300: 3.188e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.817917e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6535
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9195
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.551219618719018e-5
allele num: 45793
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 588
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MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

QD
type: SiteQuality
SIO_000300: 1.819e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 5.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQ
type: SiteQuality
SIO_000300: 6.087e1

DP
type: SiteQuality
SIO_000300: 1.787975e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9191
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.311561413863204e-4
allele num: 45747
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.72e1

FS
type: SiteQuality
SIO_000300: 7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 1.780068e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8229
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6523
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.088257699423223e-4
allele num: 9189
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45720
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.151e0

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

DP
type: SiteQuality
SIO_000300: 1.772971e6

FS
type: SiteQuality
SIO_000300: 3.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.97e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44795
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4349
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6383
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.117e0

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

FS
type: SiteQuality
SIO_000300: 3.019e0

QD
type: SiteQuality
SIO_000300: 1.159e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.384e0

DP
type: SiteQuality
SIO_000300: 1.618957e6

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4331
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African
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allele frequency: 0.0e0
allele num: 8056
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Latino
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allele frequency: 0.0e0
allele num: 9069
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.606188e6

FS
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.312e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9055
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Other
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allele frequency: 0.0e0
allele num: 572
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8542
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African
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allele frequency: 0.0e0
allele num: 8037
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4314
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European (Non-Finnish)
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allele frequency: 2.249617565013948e-5
allele num: 44452
num of homozygotes: 0

VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.265e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 569
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8979
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8417
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4273
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8889
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7879
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4229
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East Asian
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allele frequency: 0.0e0
allele num: 6183
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South Asian
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allele frequency: 1.208167210341911e-4
allele num: 8277
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.567056e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.789e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.044e0

QD
type: SiteQuality
SIO_000300: 1.754e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 9219
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
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MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.523118e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.201624799101737e-5
allele num: 45421
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4363
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9315
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8165
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.582084e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.862e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.639e1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.809e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
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Latino
type: Population
allele count: 1
allele frequency: 1.091345629160755e-4
allele num: 9163
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
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African
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allele count: 0
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South Asian
type: Population
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Other
type: Population
allele count: 0
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allele num: 601
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.356e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

FS
type: SiteQuality
SIO_000300: 1.5816e1

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 1.63598e6

VQSLOD
type: SiteQuality
SIO_000300: -1.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45879
num of homozygotes: 0

Other
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East Asian
type: Population
allele count: 0
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African
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allele count: 31
allele frequency: 3.763049283806749e-3
allele num: 8238
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9421
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
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MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

East Asian
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allele num: 6528
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European (Finnish)
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African
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allele frequency: 1.21036068748487e-4
allele num: 8262
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Other
type: Population
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46041
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South Asian
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allele count: 0
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FS
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.581e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4416
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.169620967217027e-5
allele num: 46091
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Latino
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East Asian
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

VQSLOD
type: SiteQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46179
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East Asian
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South Asian
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African
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Latino
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Other
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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Other
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East Asian
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allele count: 0
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allele num: 6619
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European (Non-Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.491e-1

East Asian
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allele num: 6617
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European (Non-Finnish)
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allele frequency: 2.12300702715326e-5
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European (Finnish)
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allele count: 0
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Other
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Latino
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African
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.119182843095702e-5
allele num: 47188
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Other
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South Asian
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East Asian
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Latino
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allele count: 0
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European (Finnish)
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allele num: 4514
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.547e0

European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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allele count: 0
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African
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allele count: 1
allele frequency: 1.186802753382388e-4
allele num: 8426
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South Asian
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114656685487111e-5
allele num: 47289
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Latino
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East Asian
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allele num: 6623
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African
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Other
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allele num: 627
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.68e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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European (Finnish)
type: Population
allele count: 0
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Other
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European (Non-Finnish)
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allele frequency: 2.112333917745717e-5
allele num: 47341
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African
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East Asian
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South Asian
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.6956e1

DP
type: SiteQuality
SIO_000300: 1.750155e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
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East Asian
type: Population
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allele frequency: 0.0e0
allele num: 6626
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South Asian
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allele count: 1
allele frequency: 9.896091044037604e-5
allele num: 10105
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111932418162619e-5
allele num: 47350
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FS
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.750504e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

South Asian
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allele count: 0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47363
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
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African
type: Population
allele count: 1
allele frequency: 1.185114956150747e-4
allele num: 8438
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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ClippingRankSum
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SIO_000300: -2.085e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

East Asian
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allele frequency: 3.019779556092405e-4
allele num: 6623
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South Asian
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African
type: Population
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allele frequency: 0.0e0
allele num: 8430
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 1.748617e6

East Asian
type: Population
allele count: 0
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allele num: 6623
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114299004165169e-5
allele num: 47297
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
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African
type: Population
allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: -1.552e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.7479e1

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.028e0

Latino
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allele count: 1
allele frequency: 1.076078768965888e-4
allele num: 9293
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East Asian
type: Population
allele count: 1
allele frequency: 1.509889778046203e-4
allele num: 6623
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Other
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8423
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47271
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DP
type: SiteQuality
SIO_000300: 1.746874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 2.672e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

Other
type: Population
allele count: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
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East Asian
type: Population
allele count: 1
allele frequency: 1.509889778046203e-4
allele num: 6623
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African
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allele count: 0
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allele num: 8423
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47271
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South Asian
type: Population
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QD
type: SiteQuality
SIO_000300: 1.094e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

FS
type: SiteQuality
SIO_000300: 2.672e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.746874e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
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South Asian
type: Population
allele count: 0
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allele num: 10076
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East Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8419
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47256
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MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

DP
type: SiteQuality
SIO_000300: 1.746842e6

QD
type: SiteQuality
SIO_000300: 2.061e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

FS
type: SiteQuality
SIO_000300: 2.188e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6619
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.117253498761407e-5
allele num: 47231
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South Asian
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African
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allele count: 0
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Other
type: Population
allele count: 0
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allele num: 624
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DP
type: SiteQuality
SIO_000300: 1.745563e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.653e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.108e-1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8416
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East Asian
type: Population
allele count: 0
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Latino
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allele frequency: 0.0e0
allele num: 9290
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.117522498676548e-5
allele num: 47225
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South Asian
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allele count: 0
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Other
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allele num: 623
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.744647e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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Other
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allele count: 0
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East Asian
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.387599540092833e-5
allele num: 46966
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.725e1

FS
type: SiteQuality
SIO_000300: 1.00877e2

DP
type: SiteQuality
SIO_000300: 1.756265e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.747e0

African
type: Population
allele count: 1
allele frequency: 1.192890373374687e-4
allele num: 8383
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East Asian
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4492
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47072
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South Asian
type: Population
allele count: 1
allele frequency: 1.00351229302559e-4
allele num: 9965
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Other
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allele count: 0
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allele num: 623
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
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Latino
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allele count: 1
allele frequency: 1.079796998164345e-4
allele num: 9261
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South Asian
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East Asian
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allele count: 0
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 1
allele frequency: 1.610305958132045e-3
allele num: 621
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European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.063739256233512e-4
allele num: 47004
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.079e0

FS
type: SiteQuality
SIO_000300: 5.137e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

QD
type: SiteQuality
SIO_000300: 1.581e1

Other
type: Population
allele count: 0
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African
type: Population
allele count: 0
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Latino
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allele num: 9226
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European (Finnish)
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allele count: 0
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East Asian
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European (Non-Finnish)
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allele count: 0
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.043e1

East Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
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European (Non-Finnish)
type: Population
allele count: 79
allele frequency: 1.698742070745081e-3
allele num: 46505
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European (Finnish)
type: Population
allele count: 9
allele frequency: 2.018842530282638e-3
allele num: 4458
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Latino
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allele count: 2
allele frequency: 2.169668040789759e-4
allele num: 9218
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South Asian
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.936e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.391e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9755
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9205
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.153223375392963e-5
allele num: 46442
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East Asian
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

DP
type: SiteQuality
SIO_000300: 1.644548e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.413e1

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.203224642040669e-4
allele num: 8311
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4443
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.996e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.103e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.621643e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.155451135922749e-5
allele num: 46394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4443
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

QD
type: SiteQuality
SIO_000300: 1.996e1

DP
type: SiteQuality
SIO_000300: 1.621643e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

FS
type: SiteQuality
SIO_000300: 1.103e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4435
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9661
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8289
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9177
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6533
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 1.583867e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

VQSLOD
type: SiteQuality
SIO_000300: -9.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9153
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4419
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.044495508669313e-4
allele num: 9574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 2.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

DP
type: SiteQuality
SIO_000300: 1.566948e6

East Asian
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9153
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.689984792526613e-5
allele num: 46030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

QD
type: SiteQuality
SIO_000300: 2.22e1

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

DP
type: SiteQuality
SIO_000300: 1.566948e6

FS
type: SiteQuality
SIO_000300: 6.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8273
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.173960303484858e-5
allele num: 45999
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4417
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.44e0

DP
type: SiteQuality
SIO_000300: 1.565128e6

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

FS
type: SiteQuality
SIO_000300: 3.822e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.175189785308768e-5
allele num: 45973
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6493
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9569
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 2.46e1

DP
type: SiteQuality
SIO_000300: 1.557532e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45917
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4415
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.075976622577669e-4
allele num: 6502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.39e0

DP
type: SiteQuality
SIO_000300: 1.54711e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.622e-1

QD
type: SiteQuality
SIO_000300: 1.793e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.357e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8245
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6491
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.095410231131559e-4
allele num: 9129
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45829
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.856e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.545265e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 2.919e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.88e1

DP
type: SiteQuality
SIO_000300: 1.543591e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.20627261761158e-4
allele num: 8290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9249
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46083
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.526777e6

QD
type: SiteQuality
SIO_000300: 3.251e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4441
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46145
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.198e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.062e0

QD
type: SiteQuality
SIO_000300: 2.007e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

DP
type: SiteQuality
SIO_000300: 1.549687e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8171
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.332098685208049e-5
allele num: 46167
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 7.935e0

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

QD
type: SiteQuality
SIO_000300: 1.767e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.45e-1

DP
type: SiteQuality
SIO_000300: 1.553214e6

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

European (Non-Finnish)
type: Population
allele count: 170
allele frequency: 3.680450313920762e-3
allele num: 46190
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.409928907097241e-4
allele num: 8299
num of homozygotes: 0

South Asian
type: Population
allele count: 211
allele frequency: 2.569097771825155e-2
allele num: 8213
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.249718785151856e-3
allele num: 4445
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.404494382022472e-3
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.559546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.601e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 2.034e1

VQSLOD
type: SiteQuality
SIO_000300: 2.772e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46209
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.205254911413764e-4
allele num: 8297
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.554217e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 2.386e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.205254911413764e-4
allele num: 8297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46249
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8263
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.744e0

FS
type: SiteQuality
SIO_000300: 7.136e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.028e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.043e1

DP
type: SiteQuality
SIO_000300: 1.558081e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079680414597279e-4
allele num: 9262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.624e0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.568608e6

FS
type: SiteQuality
SIO_000300: 2.469e0

VQSLOD
type: SiteQuality
SIO_000300: -9.943e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4463
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8335
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8535
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154243860404998e-5
allele num: 46420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

QD
type: SiteQuality
SIO_000300: 1.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

DP
type: SiteQuality
SIO_000300: 1.572551e6

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1