X-153676813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676813
    reference: chr 0
allele count: 3
allele frequency: 3.483915921495761e-5
allele num: 86110
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.443-19C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.524-19C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.431-19C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.323-19C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.296-19C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 841
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
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genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

X-153676814-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676814
    reference: chr 0
allele count: 1
allele frequency: 1.158896267195123e-5
allele num: 86289
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.296-18G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.443-18G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.323-18G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.524-18G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.431-18G>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 103
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genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

X-153676817-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676817
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676817
    reference: chr 0
allele count: 1
allele frequency: 1.155668554258639e-5
allele num: 86530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.323-15T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.524-15T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.443-15T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.431-15T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.296-15T>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-153676833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676833
    reference: chr 0
allele count: 1
allele frequency: 1.145567227612752e-5
allele num: 87293
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.432G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.525G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.444G>A
  hgvsp: ENST00000393600.3:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.297G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.324G>A
  hgvsp: ENST00000158526.9:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1448
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2762
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29667
  bin: 6.25e1
  variant carriers: 0
hgvs: c.444G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-153676841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676841
    reference: chr 0
allele count: 1
allele frequency: 1.143589039842642e-5
allele num: 87444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.332C>T
  hgvsp: ENSP00000158526.9:p.Thr111Met
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.305C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.452C>T
  hgvsp: ENSP00000377225.3:p.Thr151Met
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.440C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.533C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 88
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30
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  variant carriers: 0
hgvs: p.Thr151Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-153676842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676842
    reference: chr 0
allele count: 4
allele frequency: 4.574094615147114e-5
allele num: 87449
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.534G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.306G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.453G>A
  hgvsp: ENST00000393600.3:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.441G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.333G>A
  hgvsp: ENST00000158526.9:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
hgvs: p.Thr151Thr
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

X-153676872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676872
    reference: chr 0
allele count: 1
allele frequency: 1.141839274703693e-5
allele num: 87578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.363C>T
  hgvsp: ENST00000158526.9:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.483C>T
  hgvsp: ENST00000393600.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.471C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.564C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.336C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp161Asp
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153676897-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676897
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676897
    reference: chr 0
allele count: 1
allele frequency: 1.143327540473795e-5
allele num: 87464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.589C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.508C>A
  hgvsp: ENST00000393600.3:c.508C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.496C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.388C>A
  hgvsp: ENST00000158526.9:c.388C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.361C>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg170Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153676897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676897
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676897
    reference: chr 0
allele count: 1
allele frequency: 1.143327540473795e-5
allele num: 87464
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.508C>T
  hgvsp: ENSP00000377225.3:p.Arg170Ter
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.361C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.496C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.388C>T
  hgvsp: ENSP00000158526.9:p.Arg130Ter
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.589C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg170Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-153676898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676898
    reference: chr 0
allele count: 1
allele frequency: 1.143419051648239e-5
allele num: 87457
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.389G>A
  hgvsp: ENSP00000158526.9:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.590G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.509G>A
  hgvsp: ENSP00000377225.3:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.497G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.362G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 841
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 208
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg170Gln
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

X-153676925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676925
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676925
    reference: chr 0
allele count: 1
allele frequency: 1.147328445714155e-5
allele num: 87159
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+17C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+17C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+17C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+17C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+17C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2722
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 5687
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-153676926-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676926
    reference: chr 0
allele count: 1
allele frequency: 1.147763009893717e-5
allele num: 87126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+18C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+18C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+18C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+18C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+18C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5650
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

X-153676933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676933
    reference: chr 0
allele count: 5
allele frequency: 5.752879316097707e-5
allele num: 86913
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+25C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11880
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

X-153676935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676935
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676935
    reference: chr 0
allele count: 588
allele frequency: 6.764996893623875e-3
allele num: 86918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+27G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+27G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+27G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+27G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+27G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 18766
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1179
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 12153
  bin: 9.75e1
  variant carriers: 480
genotype quality: GenotypeQuality
  all individuals: 5378
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 803
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  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 5
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

X-153676939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676939
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676939
    reference: chr 0
allele count: 2
allele frequency: 2.30390858090751e-5
allele num: 86809
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+31C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2094
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-153676940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676940
    reference: chr 0
allele count: 20
allele frequency: 2.304731614003549e-4
allele num: 86778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+32G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+32G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+32G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+32G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+32G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS

X-153676945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676945
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676945
    reference: chr 0
allele count: 1
allele frequency: 1.153336024450724e-5
allele num: 86705
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+37C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-153676955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676955
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676955
    reference: chr 0
allele count: 7
allele frequency: 8.091269520187717e-5
allele num: 86513
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.519+47G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.372+47G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.507+47G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.600+47G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.399+47G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-153676990-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153676990
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153676989
    reference: chr 0
allele count: 1
allele frequency: 1.16134576747535e-5
allele num: 86107
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-45delC
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-45delC
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-45delC
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-45delC
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-45delC
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AC
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

X-153677000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677000
    reference: chr 0
allele count: 1
allele frequency: 1.162074535460705e-5
allele num: 86053
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-38G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-38G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-38G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-38G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-38G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1911
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS

X-153677007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677007
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677007
    reference: chr 0
allele count: 3
allele frequency: 3.484563384207959e-5
allele num: 86094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-31G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-31G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-31G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-31G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-31G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-153677013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677013
    reference: chr 0
allele count: 3
allele frequency: 3.483106931382794e-5
allele num: 86130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-25C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 40
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-153677017-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677017
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677017
    reference: chr 0
allele count: 1
allele frequency: 1.16048322521498e-5
allele num: 86171
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-21T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-21T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-21T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-21T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-21T>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

X-153677022-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677022
    reference: chr 0
allele count: 1
allele frequency: 1.159944786628157e-5
allele num: 86211
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-16C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-16C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-16C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-16C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-16C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-153677033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677033
    reference: chr 0
allele count: 2
allele frequency: 2.314439789848867e-5
allele num: 86414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.400-5C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.520-5C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.373-5C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.601-5C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.508-5C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2824
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genotype depth: GenotypeDepth
  all individuals: 456
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genotype depth: GenotypeDepth
  all individuals: 354
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
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genotype depth: GenotypeDepth
  all individuals: 236
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
hgvs: c.520-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-153677050-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677050
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677050
    reference: chr 0
allele count: 1
allele frequency: 1.153548893169837e-5
allele num: 86689
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.412C>A
  hgvsp: ENST00000158526.9:c.412C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.613C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.520C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.385C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.532C>A
  hgvsp: ENST00000393600.3:c.532C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2030
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23844
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg178Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-153677067-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677067
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677067
    reference: chr 0
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.630G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.402G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.549G>T
  hgvsp: ENST00000393600.3:c.549G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.429G>T
  hgvsp: ENST00000158526.9:c.429G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.537G>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3114
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  variant carriers: 0
hgvs: p.Leu183Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-153677068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677068
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677068
    reference: chr 0
allele count: 1
allele frequency: 1.151795072620679e-5
allele num: 86821
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.631C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.550C>T
  hgvsp: ENSP00000377225.3:p.Arg184Trp
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.430C>T
  hgvsp: ENSP00000158526.9:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.538C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.403C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg184Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

X-153677069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677069
    reference: chr 0
allele count: 1
allele frequency: 1.151967560593494e-5
allele num: 86808
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.551G>A
  hgvsp: ENSP00000377225.3:p.Arg184Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.539G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.431G>A
  hgvsp: ENSP00000158526.9:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.404G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.632G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg184Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

X-153677075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677075
    reference: chr 0
allele count: 152
allele frequency: 1.791755566819516e-3
allele num: 84833
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.557A>G
  hgvsp: ENSP00000377225.3:p.Glu186Gly
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.437A>G
  hgvsp: ENSP00000158526.9:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.410A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.545A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.638A>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3911
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genotype depth: GenotypeDepth
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  variant carriers: 12
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 201
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  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 476
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  variant carriers: 19
genotype depth: GenotypeDepth
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  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 340
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2012
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1656
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genotype depth: GenotypeDepth
  all individuals: 13187
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  variant carriers: 6
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13212
  bin: 9.75e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1518
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genotype quality: GenotypeQuality
  all individuals: 1883
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Glu186Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-153677076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677076
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677076
    reference: chr 0
allele count: 1
allele frequency: 1.151901212951977e-5
allele num: 86813
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.639G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.411G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.438G>A
  hgvsp: ENST00000158526.9:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.558G>A
  hgvsp: ENST00000393600.3:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.546G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu186Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-153677077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677077
    reference: chr 0
allele count: 1
allele frequency: 1.162344681691909e-5
allele num: 86033
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.559T>C
  hgvsp: ENSP00000377225.3:p.Trp187Arg
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.547T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.412T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.439T>C
  hgvsp: ENSP00000158526.9:p.Trp147Arg
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.640T>C
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13625
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Trp187Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-153677077-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677077
    reference: chr 0
allele count: 152
allele frequency: 1.766763916171702e-3
allele num: 86033
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.559T>G
  hgvsp: ENSP00000377225.3:p.Trp187Gly
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.640T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.439T>G
  hgvsp: ENSP00000158526.9:p.Trp147Gly
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.547T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.412T>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
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  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13291
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
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  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13625
  bin: 9.75e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Trp187Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-153677088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677088
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677088
    reference: chr 0
allele count: 1
allele frequency: 1.152365807001775e-5
allele num: 86778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.450G>A
  hgvsp: ENST00000158526.9:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.651G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.423G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.570G>A
  hgvsp: ENST00000393600.3:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.558G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13742
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys190Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-153677110-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677110
    reference: chr 0
allele count: 1
allele frequency: 1.152937107280798e-5
allele num: 86735
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+6T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+6T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+6T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+6T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+6T>C
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
hgvs: c.586+6T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

X-153677112-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677112
    reference: chr 0
allele count: 4
allele frequency: 4.611961121167749e-5
allele num: 86731
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+8T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+8T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+8T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+8T>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+8T>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
hgvs: c.586+8T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

X-153677113-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677113
    reference: chr 0
allele count: 4
allele frequency: 4.611854772693208e-5
allele num: 86733
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+9T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+9T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+9T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+9T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+9T>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

X-153677116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677116
    reference: chr 0
allele count: 4
allele frequency: 4.624223997410434e-5
allele num: 86501
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+12C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+12C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+12C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+12C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+12C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1818
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-153677117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677117
    reference: chr 0
allele count: 1
allele frequency: 1.154587754442276e-5
allele num: 86611
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+13G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+13G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+13G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+13G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+13G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

X-153677120-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677120
    reference: chr 0
allele count: 1
allele frequency: 1.153788464422933e-5
allele num: 86671
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+16G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+16G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+16G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+16G>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+16G>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13752
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-153677124-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677124
    reference: chr 0
allele count: 1
allele frequency: 1.154654411934508e-5
allele num: 86606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+20G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+20G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+20G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+20G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+20G>C
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

X-153677126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677126
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677126
    reference: chr 0
allele count: 2
allele frequency: 2.310803004043905e-5
allele num: 86550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+22C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+22C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+22C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+22C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+22C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-153677127-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677127
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677127
    reference: chr 0
allele count: 1
allele frequency: 1.154774414818065e-5
allele num: 86597
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+23G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+23G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+23G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+23G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+23G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-153677128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677128
    reference: chr 0
allele count: 6
allele frequency: 6.931848377369825e-5
allele num: 86557
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+24C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+24C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+24C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+24C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+24C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153677129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677129
    reference: chr 0
allele count: 1
allele frequency: 1.155241329913819e-5
allele num: 86562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+25G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+25G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+25G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+25G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+25G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-153677132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677132
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677132
    reference: chr 0
allele count: 1
allele frequency: 1.154827757439978e-5
allele num: 86593
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+28G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+28G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+28G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+28G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+28G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 889
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-153677143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677143
    reference: chr 0
allele count: 1
allele frequency: 1.155441551989093e-5
allele num: 86547
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+39C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

X-153677154-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677154
    reference: chr 0
allele count: 3
allele frequency: 3.461884650003462e-5
allele num: 86658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+50C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+50C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+50C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+50C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+50C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153677154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677154
    reference: chr 0
allele count: 1
allele frequency: 1.153961550001154e-5
allele num: 86658
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.586+50C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.466+50C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.667+50C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.439+50C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.574+50C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-153677201-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677201
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677201
    reference: chr 0
allele count: 1
allele frequency: 1.152538465971302e-5
allele num: 86765
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-40T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-40T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-40T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-40T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-40T>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-153677202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677202
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677202
    reference: chr 0
allele count: 2
allele frequency: 2.306007148622161e-5
allele num: 86730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-39C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-39C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

X-153677206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677206
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677206
    reference: chr 0
allele count: 2
allele frequency: 2.305794461481703e-5
allele num: 86738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-35G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-35G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-35G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-35G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-35G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153677212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677212
    reference: chr 0
allele count: 1
allele frequency: 1.152857356959223e-5
allele num: 86741
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-29G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-29G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-29G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-29G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-29G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2479
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genotype quality: GenotypeQuality
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-153677224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677224
    reference: chr 0
allele count: 1
allele frequency: 1.152511899685364e-5
allele num: 86767
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-17G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-17G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-17G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-17G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-17G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

X-153677225-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677225
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677225
    reference: chr 0
allele count: 2
allele frequency: 2.305900800147578e-5
allele num: 86734
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-16C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-16C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-16C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-16C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-16C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

X-153677231-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677231
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677231
    reference: chr 0
allele count: 2
allele frequency: 2.304519162076833e-5
allele num: 86786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-10T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-10T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-10T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-10T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-10T>C
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-153677233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677233
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677233
    reference: chr 0
allele count: 1
allele frequency: 1.152578317696687e-5
allele num: 86762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.467-8C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.575-8C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.440-8C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.668-8C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.587-8C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 578
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genotype depth: GenotypeDepth
  all individuals: 2234
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 140
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genotype quality: GenotypeQuality
  all individuals: 2465
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genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 197
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genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9038
  bin: 6.75e1
  variant carriers: 0
hgvs: c.587-8C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

X-153677242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677242
    reference: chr 0
allele count: 1
allele frequency: 1.151927751091452e-5
allele num: 86811
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.468T>C
  hgvsp: ENST00000158526.9:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.669T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.576T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.441T>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.588T>C
  hgvsp: ENST00000393600.3:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23586
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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genotype depth: GenotypeDepth
  all individuals: 13937
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9376
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
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genotype quality: GenotypeQuality
  all individuals: 5681
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
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genotype quality: GenotypeQuality
  all individuals: 9079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 68
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genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
  all individuals: 1361
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
hgvs: c.588T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

X-153677249-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677249
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677249
    reference: chr 0
allele count: 2
allele frequency: 2.303404431750127e-5
allele num: 86828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.448A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.475A>G
  hgvsp: ENSP00000158526.9:p.Ile159Val
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.676A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.595A>G
  hgvsp: ENSP00000377225.3:p.Ile199Val
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.583A>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2448
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  variant carriers: 0
hgvs: p.Ile199Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153677251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677251
    reference: chr 0
allele count: 8
allele frequency: 9.216165153679554e-5
allele num: 86804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.597C>T
  hgvsp: ENST00000393600.3:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.585C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.678C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.450C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.477C>T
  hgvsp: ENST00000158526.9:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23671
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2233
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genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile199Ile
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-153677268-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677268
    reference: chr 0
allele count: 2
allele frequency: 2.304758173248672e-5
allele num: 86777
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.467A>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.494A>T
  hgvsp: ENSP00000158526.9:p.Tyr165Phe
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.614A>T
  hgvsp: ENSP00000377225.3:p.Tyr205Phe
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.602A>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.695A>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr205Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-153677292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677292
    reference: chr 0
allele count: 1
allele frequency: 1.161872008179579e-5
allele num: 86068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.626G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.518G>A
  hgvsp: ENSP00000158526.9:p.Arg173Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.638G>A
  hgvsp: ENSP00000377225.3:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.491G>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.719G>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 408
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
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  variant carriers: 0
hgvs: p.Arg213Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-153677328-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677328
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677328
    reference: chr 0
allele count: 1
allele frequency: 1.210814999576215e-5
allele num: 82589
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.527G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+26G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+26G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+26G>C
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.662G>C
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-153677331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677331
    reference: chr 0
allele count: 1
allele frequency: 1.217626359175423e-5
allele num: 82127
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+29C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.665C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+29C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+29C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.530C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5621
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16481
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-153677333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677333
    reference: chr 0
allele count: 1
allele frequency: 1.222733052919886e-5
allele num: 81784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.532C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.667C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+31C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+31C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 214
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-153677336-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677336
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677336
    reference: chr 0
allele count: 2
allele frequency: 2.453867294856694e-5
allele num: 81504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.670T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+34T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+34T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.535T>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+34T>G
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1582
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genotype quality: GenotypeQuality
  all individuals: 5438
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-153677341-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677341
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677341
    reference: chr 0
allele count: 3
allele frequency: 3.717886753169498e-5
allele num: 80691
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+39C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.540C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+39C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.675C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+39C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

X-153677343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677343
    reference: chr 0
allele count: 1
allele frequency: 1.249828148629564e-5
allele num: 80011
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+41A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.677A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+41A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.542A>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+41A>G
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

X-153677346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677346
    reference: chr 0
allele count: 1
allele frequency: 1.253211354094868e-5
allele num: 79795
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.528+44C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.648+44C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000481619
  gene symbol: FAM50A
  hgvsc: ENST00000481619.1:n.680C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000478509
  gene symbol: FAM50A
  hgvsc: ENST00000478509.1:n.545C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.729+44C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-153677524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677524
    reference: chr 0
allele count: 1
allele frequency: 1.150999643190111e-5
allele num: 86881
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.529-45C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.649-45C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.730-45C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-153677532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677532
    reference: chr 0
allele count: 3
allele frequency: 3.448117327938945e-5
allele num: 87004
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.649-37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.730-37C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.529-37C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
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site quality: VQSLOD

X-153677532-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677532
    reference: chr 0
allele count: 1
allele frequency: 1.149372442646315e-5
allele num: 87004
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.649-37C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.529-37C>A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.730-37C>A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-153677544-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677544
    reference: chr 0
allele count: 1
allele frequency: 1.145619722989151e-5
allele num: 87289
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.529-25C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.730-25C>G
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.649-25C>G
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16034
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

X-153677544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677544
    reference: chr 0
allele count: 2
allele frequency: 2.291239445978302e-5
allele num: 87289
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  hgvsc: ENST00000393600.3:c.649-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  hgvsc: ENST00000158526.9:c.529-25C>T
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  hgvsc: ENST00000464419.1:n.730-25C>T
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16034
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-153677545-CAACTCCTGGAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153677545
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153677534
    reference: chr 0
allele count: 1
allele frequency: 1.145344175924865e-5
allele num: 87310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl transcript: ENST00000464419
  gene symbol: FAM50A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000158526
  ensembl transcript: ENST00000158526
  gene symbol: FAM50A
  variant of: http://identifiers.org/hgnc/18786
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071859
  ensembl protein: ENSP00000377225
  ensembl transcript: ENST00000393600
  gene symbol: FAM50A
  variant of: http://identifiers.org/hgnc/18786
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: CAACTCCTGGAT

GenotypeQuality
all individuals: 11870
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081314878892734e-4
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.400960384153662e-4
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9937
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.81e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.172e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 1.685e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.757344e6

GenotypeQuality
all individuals: 349
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6477
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.198035222235534e-4
allele num: 8347
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.76e-1

DP
type: SiteQuality
SIO_000300: 1.762767e6

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.699e0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5807
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115730455939913e-5
allele num: 47265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9999
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.108e0

QD
type: SiteQuality
SIO_000300: 1.391e1

VQSLOD
type: SiteQuality
SIO_000300: -6.138e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.414e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 1.769839e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11878
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47721
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.917683229197659e-5
allele num: 10083
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.43e-2

DP
type: SiteQuality
SIO_000300: 1.790808e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 3.237e1

GenotypeQuality
all individuals: 11878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178828244724744e-4
allele num: 8483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47801
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 8.81e-1

DP
type: SiteQuality
SIO_000300: 1.794883e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.141e-1

GenotypeQuality
all individuals: 6015
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.715312978898975e-4
allele num: 8483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10091
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.777e1

DP
type: SiteQuality
SIO_000300: 1.795509e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 5.722e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509433962264151e-4
allele num: 6625
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47879
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

FS
type: SiteQuality
SIO_000300: 6.436e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 2.555e1

DP
type: SiteQuality
SIO_000300: 1.799274e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.019e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.904912836767037e-5
allele num: 10096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.348e0

DP
type: SiteQuality
SIO_000300: 1.791936e6

MQ
type: SiteQuality
SIO_000300: 5.87e1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

QD
type: SiteQuality
SIO_000300: 1.112e1

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11879
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075037626316921e-4
allele num: 9302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.112e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 4.348e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

DP
type: SiteQuality
SIO_000300: 1.791936e6

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11879
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47805
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.791333e6

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.69e-2

MQ
type: SiteQuality
SIO_000300: 5.913e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.2e1

GenotypeQuality
all individuals: 3338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24407
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099913903529955e-5
allele num: 47621
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 3.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.759181e6

GenotypeQuality
all individuals: 2109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11879
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9273
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101105181325377e-5
allele num: 47594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.755828e6

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106682396561894e-5
allele num: 47468
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.724781478856603e-4
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10041
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6555
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.739889e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.605e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 2.861e0

GenotypeQuality
all individuals: 3306
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2685
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2125
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 997
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2090
bin: 9.25e1
variant carriers: 16

European (Finnish)
type: Population
allele count: 41
allele frequency: 9.125306031604719e-3
allele num: 4493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 498
allele frequency: 1.049459465154995e-2
allele num: 47453
num of homozygotes: 1

Other
type: Population
allele count: 10
allele frequency: 1.587301587301587e-2
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 2.159827213822894e-3
allele num: 9260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.950248756218905e-5
allele num: 10050
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.125147579693034e-3
allele num: 8470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.975e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.931e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.213e1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

DP
type: SiteQuality
SIO_000300: 1.748904e6

QD
type: SiteQuality
SIO_000300: 1.899e1

GenotypeQuality
all individuals: 1164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11969
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.363507445048452e-4
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10039
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.018e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

DP
type: SiteQuality
SIO_000300: 1.734039e6

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.998e1

GenotypeQuality
all individuals: 2435
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11973
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18366
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.221368567689645e-5
allele num: 47378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 2.010406811731315e-3
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10027
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081081081081081e-4
allele num: 9250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6549
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

DP
type: SiteQuality
SIO_000300: 1.733318e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 1.674e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1399
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11969
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.529285823520416e-4
allele num: 6539
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47331
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10025
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 5.93e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.726942e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.558e0

QD
type: SiteQuality
SIO_000300: 1.989e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2561
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.482516890103141e-4
allele num: 47217
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4475
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.567e-1

FS
type: SiteQuality
SIO_000300: 1.008e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.574e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

QD
type: SiteQuality
SIO_000300: 2.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.723179e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeQuality
all individuals: 13844
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.19703136222169e-4
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47073
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

MQ
type: SiteQuality
SIO_000300: 6.126e1

QD
type: SiteQuality
SIO_000300: 2.834e1

DP
type: SiteQuality
SIO_000300: 1.96743e6

GenotypeQuality
all individuals: 1436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9193
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9945
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47057
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.19717466778403e-4
allele num: 8353
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.369e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -3.573e-1

DP
type: SiteQuality
SIO_000300: 1.968888e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13835
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1035
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.369291522472984e-5
allele num: 47101
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8343
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4315
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9951
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9205
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.729e0

DP
type: SiteQuality
SIO_000300: 1.974091e6

QD
type: SiteQuality
SIO_000300: 2.689e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.015378429992964e-4
allele num: 9949
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 1.981392e6

FS
type: SiteQuality
SIO_000300: 5.433e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.665e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 1579
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121250689406474e-5
allele num: 47142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.005e1

FS
type: SiteQuality
SIO_000300: 7.184e0

DP
type: SiteQuality
SIO_000300: 1.98789e6

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18992
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47173
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4315
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.195743154370441e-4
allele num: 8363
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

DP
type: SiteQuality
SIO_000300: 1.998188e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

GenotypeQuality
all individuals: 2437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1941
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 13846
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1474
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8375
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9225
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4319
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.00260338439972e-4
allele num: 9987
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.244e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.014e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.708e0

QD
type: SiteQuality
SIO_000300: 3.103e1

DP
type: SiteQuality
SIO_000300: 2.024977e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8397
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.107170701898561e-5
allele num: 47457
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10021
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

VQSLOD
type: SiteQuality
SIO_000300: -1.697e0

QD
type: SiteQuality
SIO_000300: 7.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

FS
type: SiteQuality
SIO_000300: 8.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.055052e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
all individuals: 1955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13853
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10055
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.103668798384382e-5
allele num: 47536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 6.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.719e0

FS
type: SiteQuality
SIO_000300: 1.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.549e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

DP
type: SiteQuality
SIO_000300: 2.063462e6

GenotypeQuality
all individuals: 13854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4345
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8401
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104421389339001e-5
allele num: 47519
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.74e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 6.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.291e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

DP
type: SiteQuality
SIO_000300: 2.064252e6

GenotypeQuality
all individuals: 2503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 666
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 13856
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.299908003679853e-4
allele num: 4348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47511
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.455e1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-2

DP
type: SiteQuality
SIO_000300: 2.063794e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 378
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 475
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.041362530413625e-4
allele num: 6576
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.170138888888889e-4
allele num: 9216
num of homozygotes: 0

European (Non-Finnish)
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allele count: 85
allele frequency: 1.83411013291904e-3
allele num: 46344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.4906600249066e-3
allele num: 4015
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 6.588761810044754e-3
allele num: 8044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.068211e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 5.833e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.416e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47500
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8403
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South Asian
type: Population
allele count: 1
allele frequency: 9.945300845350572e-5
allele num: 10055
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

FS
type: SiteQuality
SIO_000300: 2.984e0

DP
type: SiteQuality
SIO_000300: 2.064089e6

MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10043
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6585
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.200192030724916e-4
allele num: 8332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47163
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.057869e6

MQ
type: SiteQuality
SIO_000300: 5.878e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.622e0

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.4441e2

VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 9.25e1
variant carriers: 5

Latino
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allele count: 2
allele frequency: 2.165908598657137e-4
allele num: 9234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10043
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.037205770690964e-4
allele num: 6585
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.82346330810169e-3
allele num: 47163
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.452182442373713e-3
allele num: 4078
num of homozygotes: 0

African
type: Population
allele count: 52
allele frequency: 6.240998559769563e-3
allele num: 8332
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 1.4441e2

DP
type: SiteQuality
SIO_000300: 2.057869e6

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.476e0

VQSLOD
type: SiteQuality
SIO_000300: -1.005e2

QD
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.622e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2811
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.105795148247979e-5
allele num: 47488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.301e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

DP
type: SiteQuality
SIO_000300: 2.053535e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10039
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8407
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47473
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.636661211129296e-3
allele num: 611
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.037842e6

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 1.612e0

QD
type: SiteQuality
SIO_000300: 1.624e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.428327609094166e-5
allele num: 47459
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10041
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9255
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 8.428860418071477e-5
allele num: 47456
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.33887632852283e-5
allele num: 47327
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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allele frequency: 9.999000099990002e-5
allele num: 10001
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
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Latino
type: Population
allele count: 0
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allele num: 9248
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 9.975062344139652e-5
allele num: 10025
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47419
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 2.020402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.032e1

GenotypeQuality
all individuals: 3047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47377
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.189484953015344e-4
allele num: 8407
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

QD
type: SiteQuality
SIO_000300: 1.532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 2.012006e6

GenotypeQuality
all individuals: 5571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8401
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.998000399920016e-5
allele num: 10002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 2.479e0

DP
type: SiteQuality
SIO_000300: 2.010732e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.438e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
SIO_000300: 1.713e1

GenotypeQuality
all individuals: 1943
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13751
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 9.992006394884092e-5
allele num: 10008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8403
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.037e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

DP
type: SiteQuality
SIO_000300: 2.010729e6

GenotypeQuality
all individuals: 2098
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13754
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2510
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.112021627101461e-5
allele num: 47348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.081548777849881e-4
allele num: 9246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.758505829169641e-4
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10001
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

DP
type: SiteQuality
SIO_000300: 2.009208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 1599
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variant carriers: 0

GenotypeQuality
all individuals: 1628
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variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.189484953015344e-4
allele num: 8407
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47350
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

DP
type: SiteQuality
SIO_000300: 2.007338e6

FS
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.71e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
all individuals: 2098
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
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variant carriers: 0

GenotypeQuality
all individuals: 2543
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GenotypeQuality
all individuals: 2784
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.996001599360256e-5
allele num: 10004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 2.005823e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -5.978e-1

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
all individuals: 13779
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 3347
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variant carriers: 0

GenotypeQuality
all individuals: 2010
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variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4357
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111754022891414e-5
allele num: 47354
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.006893e6

QD
type: SiteQuality
SIO_000300: 2.385e1

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: -1.072e0

GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13822
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9965
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4383
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.327378567059667e-5
allele num: 47413
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.93e-2

DP
type: SiteQuality
SIO_000300: 2.020593e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.053e0

QD
type: SiteQuality
SIO_000300: 1.8e1

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 3601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 4.75e1
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GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9965
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4383
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.109126189019889e-5
allele num: 47413
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 2.020593e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 3.053e0

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.93e-2

QD
type: SiteQuality
SIO_000300: 1.8e1

GenotypeQuality
all individuals: 455
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07469102632993e-4
allele num: 9305
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.974e0

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 1.873319e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.103e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 1846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
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GenotypeQuality
all individuals: 9018
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.193399589046841e-5
allele num: 47694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

DP
type: SiteQuality
SIO_000300: 1.873768e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.53e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 6.451e0

QD
type: SiteQuality
SIO_000300: 1.401e1

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.103049421661409e-4
allele num: 9510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47687
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.873946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.089e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.088e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9497
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47701
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 2.432e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.289e0

FS
type: SiteQuality
SIO_000300: 1.0813e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.829e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.875807e6

GenotypeQuality
all individuals: 1134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.051303616484441e-4
allele num: 9512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47706
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.528e1

MQ
type: SiteQuality
SIO_000300: 5.611e1

VQSLOD
type: SiteQuality
SIO_000300: -3.45e-2

DP
type: SiteQuality
SIO_000300: 1.880167e6

GenotypeQuality
all individuals: 2855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.354048964218456e-4
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47703
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.880962e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.068e0

QD
type: SiteQuality
SIO_000300: 1.388e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 1.077e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

GenotypeQuality
all individuals: 1133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5684
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.191641866118959e-5
allele num: 47714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9525
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

FS
type: SiteQuality
SIO_000300: 8.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

DP
type: SiteQuality
SIO_000300: 1.883695e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.273e1

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.441e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.529e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -3.261e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.316e0

FS
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.885138e6

GenotypeQuality
all individuals: 2452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.047449460563528e-4
allele num: 9547
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 2.521e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.889908e6

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34476
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9559
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.191114836546522e-5
allele num: 47720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.891744e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 3.096e1

MQRankSum
type: SiteQuality
SIO_000300: -1.199e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.95e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.627e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5681
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34457
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.282064705266465e-4
allele num: 9551
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096128450751462e-5
allele num: 47707
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.98e-2

DP
type: SiteQuality
SIO_000300: 1.892416e6

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5676
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.195070791819612e-5
allele num: 47675
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9557
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.891979e6

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.459e1

GenotypeQuality
all individuals: 2776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8457
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.108059109977444e-5
allele num: 47437
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.867175e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 8.510999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
all individuals: 3989
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18643
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.098056440101021e-4
allele num: 9107
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4243
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8307
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45945
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7921
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6495
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.521e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.727e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 8281
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.186365822729459e-5
allele num: 45738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -2.7e-3

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 564
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East Asian
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allele count: 1
allele frequency: 1.548227279764669e-4
allele num: 6459
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45586
num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 2.963e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4171
num of homozygotes: 0

South Asian
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allele frequency: 2.633658151171978e-4
allele num: 7594
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Latino
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allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8261
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45443
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.68e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 4.699984333385555e-4
allele num: 6383
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4122
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8199
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8983
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45085
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0438e1

DP
type: SiteQuality
SIO_000300: 1.469313e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

QD
type: SiteQuality
SIO_000300: 2.124e1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4096
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.234087710283506e-5
allele num: 44761
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4079
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.240043008825769e-5
allele num: 44642
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.624e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47649
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
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allele frequency: 1.031034127229611e-4
allele num: 9699
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East Asian
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Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.290231270836391e-5
allele num: 47693
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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FS
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DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
allele num: 626
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European (Non-Finnish)
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allele frequency: 4.183487773756981e-5
allele num: 47807
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
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FS
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QD
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MQ
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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