19-11211025-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211025
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211025
    reference: chr 19
allele count: 2
allele frequency: 1.663948883490299e-5
allele num: 120196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+4A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.280A>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26730
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: c.190+4A>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-11211030-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211030
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211030
    reference: chr 19
allele count: 2
allele frequency: 1.667806334328458e-5
allele num: 119918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.285C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+9C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+9C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6992
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-11211031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211031
    reference: chr 19
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+10C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.286C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+10C>G
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

19-11211031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211031
    reference: chr 19
allele count: 2
allele frequency: 1.669337606837607e-5
allele num: 119808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.286C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+10C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-11211034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211034
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211034
    reference: chr 19
allele count: 1
allele frequency: 8.366660531115611e-6
allele num: 119522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.289T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+13T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

19-11211038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211038
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211038
    reference: chr 19
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.293C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+17C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-11211042-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211042
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211042
    reference: chr 19
allele count: 1
allele frequency: 8.440243079000674e-6
allele num: 118480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.297A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+21A>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

19-11211045-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211045
    reference: chr 19
allele count: 1
allele frequency: 8.4530853761623e-6
allele num: 118300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.300T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+24T>G
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

19-11211046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211046
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211046
    reference: chr 19
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.301G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+25G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

19-11211047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211047
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211047
    reference: chr 19
allele count: 3
allele frequency: 2.538930264048747e-5
allele num: 118160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+26C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.302C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+26C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-11211055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211055
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211055
    reference: chr 19
allele count: 2
allele frequency: 1.702243557008137e-5
allele num: 117492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.310T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+34T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

19-11211068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211068
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211068
    reference: chr 19
allele count: 1
allele frequency: 8.77778167901408e-6
allele num: 113924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.323C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+47C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+47C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-11211070-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11211070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11211070
    reference: chr 19
allele count: 1
allele frequency: 8.783641346356545e-6
allele num: 113848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.276+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000560502
  gene symbol: LDLR
  hgvsc: ENST00000560502.1:n.325G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.444+49G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.190+49G>C
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5907
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7400
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-11213290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213290
    reference: chr 19
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-50C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2269C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

19-11213303-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213303
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213303
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-37T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2282T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-11213311-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213311
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213311
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-29G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2290G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-11213314-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213314
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213314
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-26A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2293A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-26A>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-11213324-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213324
    reference: chr 19
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2303C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-16C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-16C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47327
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-11213325-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213325
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213325
    reference: chr 19
allele count: 12
allele frequency: 9.883864591055103e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2304C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-15C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-15C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-11213335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213335
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2314T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191-5T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445-5T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: c.191-5T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-11213340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213340
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213340
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.191T>C
  hgvsp: ENSP00000453557.1:p.Leu64Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.191T>C
  hgvsp: ENSP00000453346.1:p.Leu64Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.191T>C
  hgvsp: ENSP00000454071.1:p.Leu64Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.191T>C
  hgvsp: ENSP00000397829.2:p.Leu64Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2319T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.191T>C
  hgvsp: ENSP00000437639.1:p.Leu64Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.445T>C
  hgvsp: ENSP00000252444.5:p.Leu149Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.277T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu64Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

19-11213344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213344
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2323T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.195T>C
  hgvsp: ENST00000558518.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.195T>C
  hgvsp: ENST00000545707.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.281T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.195T>C
  hgvsp: ENST00000557933.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.449T>C
  hgvsp: ENST00000252444.5:c.449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.195T>C
  hgvsp: ENST00000558013.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.195T>C
  hgvsp: ENST00000455727.2:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser65Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-11213359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213359
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.210C>T
  hgvsp: ENST00000455727.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.464C>T
  hgvsp: ENST00000252444.5:c.464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.210C>T
  hgvsp: ENST00000557933.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2338C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.210C>T
  hgvsp: ENST00000545707.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.210C>T
  hgvsp: ENST00000558518.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.296C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.210C>T
  hgvsp: ENST00000558013.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser70Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-11213359-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213358
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.300delG
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.214delG
  hgvsp: ENSP00000397829.2:p.Asp72ThrfsTer34
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.468delG
  hgvsp: ENSP00000252444.5:p.Asp157ThrfsTer134
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.214delG
  hgvsp: ENSP00000453346.1:p.Asp72ThrfsTer134
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.214delG
  hgvsp: ENSP00000437639.1:p.Asp72ThrfsTer66
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.214delG
  hgvsp: ENSP00000453557.1:p.Asp72ThrfsTer134
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2342delG
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.214delG
  hgvsp: ENSP00000454071.1:p.Asp72ThrfsTer134
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47326
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp72ThrfsTer134
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: CG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

19-11213360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213360
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213360
    reference: chr 19
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.211G>A
  hgvsp: ENSP00000453346.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.211G>A
  hgvsp: ENSP00000397829.2:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.211G>A
  hgvsp: ENSP00000454071.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.211G>A
  hgvsp: ENSP00000453557.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2339G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.465G>A
  hgvsp: ENSP00000252444.5:p.Gly156Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.297G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.211G>A
  hgvsp: ENSP00000437639.1:p.Gly71Arg
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47325
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly71Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-11213361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213361
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213361
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.212G>A
  hgvsp: ENSP00000453557.1:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.212G>A
  hgvsp: ENSP00000437639.1:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.212G>A
  hgvsp: ENSP00000453346.1:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.212G>A
  hgvsp: ENSP00000397829.2:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.466G>A
  hgvsp: ENSP00000252444.5:p.Gly156Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.298G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.212G>A
  hgvsp: ENSP00000454071.1:p.Gly71Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2340G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly71Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-11213363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213363
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213363
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.214G>A
  hgvsp: ENSP00000453346.1:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.468G>A
  hgvsp: ENSP00000252444.5:p.Asp157Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.214G>A
  hgvsp: ENSP00000453557.1:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.214G>A
  hgvsp: ENSP00000397829.2:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.214G>A
  hgvsp: ENSP00000437639.1:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.300G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.214G>A
  hgvsp: ENSP00000454071.1:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2342G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp72Asn
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-11213368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213368
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.473C>T
  hgvsp: ENST00000252444.5:c.473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2347C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.219C>T
  hgvsp: ENST00000455727.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.219C>T
  hgvsp: ENST00000558518.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.305C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.219C>T
  hgvsp: ENST00000545707.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.219C>T
  hgvsp: ENST00000558013.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.219C>T
  hgvsp: ENST00000557933.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47326
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe73Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-11213371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213371
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.222C>T
  hgvsp: ENST00000545707.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2350C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.222C>T
  hgvsp: ENST00000455727.2:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.222C>T
  hgvsp: ENST00000558518.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.308C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.222C>T
  hgvsp: ENST00000557933.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.476C>T
  hgvsp: ENST00000252444.5:c.476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.222C>T
  hgvsp: ENST00000558013.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser74Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-11213374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213374
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.225T>C
  hgvsp: ENST00000558013.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.225T>C
  hgvsp: ENST00000455727.2:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.225T>C
  hgvsp: ENST00000558518.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.225T>C
  hgvsp: ENST00000545707.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2353T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.311T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.479T>C
  hgvsp: ENST00000252444.5:c.479T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.225T>C
  hgvsp: ENST00000557933.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys75Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-11213375-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213375
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213375
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.480G>C
  hgvsp: ENSP00000252444.5:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.226G>C
  hgvsp: ENSP00000453557.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.312G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.226G>C
  hgvsp: ENSP00000454071.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.226G>C
  hgvsp: ENSP00000397829.2:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.226G>C
  hgvsp: ENSP00000437639.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2354G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.226G>C
  hgvsp: ENSP00000453346.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly76Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-11213381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213381
    reference: chr 19
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.232C>T
  hgvsp: ENSP00000397829.2:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.232C>T
  hgvsp: ENSP00000453557.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2360C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.486C>T
  hgvsp: ENSP00000252444.5:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.232C>T
  hgvsp: ENSP00000437639.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.232C>T
  hgvsp: ENSP00000454071.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.232C>T
  hgvsp: ENSP00000453346.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.318C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg78Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

19-11213382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213382
    reference: chr 19
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.233G>A
  hgvsp: ENSP00000454071.1:p.Arg78His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2361G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.233G>A
  hgvsp: ENSP00000453346.1:p.Arg78His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.233G>A
  hgvsp: ENSP00000453557.1:p.Arg78His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.233G>A
  hgvsp: ENSP00000397829.2:p.Arg78His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.487G>A
  hgvsp: ENSP00000252444.5:p.Arg163His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.233G>A
  hgvsp: ENSP00000437639.1:p.Arg78His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.319G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47325
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg78His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

19-11213382-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213382
    reference: chr 19
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.233G>T
  hgvsp: ENSP00000437639.1:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.487G>T
  hgvsp: ENSP00000252444.5:p.Arg163Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2361G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.233G>T
  hgvsp: ENSP00000454071.1:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.233G>T
  hgvsp: ENSP00000453557.1:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.233G>T
  hgvsp: ENSP00000453346.1:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.233G>T
  hgvsp: ENSP00000397829.2:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.319G>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47325
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg78Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-11213390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213390
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213390
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.495C>T
  hgvsp: ENSP00000252444.5:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.327C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.241C>T
  hgvsp: ENSP00000454071.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.241C>T
  hgvsp: ENSP00000437639.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.241C>T
  hgvsp: ENSP00000453557.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.241C>T
  hgvsp: ENSP00000453346.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.241C>T
  hgvsp: ENSP00000397829.2:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2369C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg81Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ

19-11213408-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213408
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213408
    reference: chr 19
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.259T>G
  hgvsp: ENSP00000454071.1:p.Trp87Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.259T>G
  hgvsp: ENSP00000397829.2:p.Trp87Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.259T>G
  hgvsp: ENSP00000453557.1:p.Trp87Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.513T>G
  hgvsp: ENSP00000252444.5:p.Trp172Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2387T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.345T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.259T>G
  hgvsp: ENSP00000453346.1:p.Trp87Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.259T>G
  hgvsp: ENSP00000437639.1:p.Trp87Gly
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp87Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-11213416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213416
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213416
    reference: chr 19
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.267C>T
  hgvsp: ENST00000455727.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.353C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2395C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.267C>T
  hgvsp: ENST00000557933.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.267C>T
  hgvsp: ENST00000558518.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.267C>T
  hgvsp: ENST00000545707.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.267C>T
  hgvsp: ENST00000558013.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.521C>T
  hgvsp: ENST00000252444.5:c.521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys89Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

19-11213417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213417
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213417
    reference: chr 19
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.268G>A
  hgvsp: ENSP00000453557.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.268G>A
  hgvsp: ENSP00000454071.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.268G>A
  hgvsp: ENSP00000453346.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.268G>A
  hgvsp: ENSP00000437639.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.354G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.522G>A
  hgvsp: ENSP00000252444.5:p.Asp175Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2396G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.268G>A
  hgvsp: ENSP00000397829.2:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp90Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-11213418-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213418
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.269A>G
  hgvsp: ENSP00000453557.1:p.Asp90Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.269A>G
  hgvsp: ENSP00000437639.1:p.Asp90Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.269A>G
  hgvsp: ENSP00000454071.1:p.Asp90Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.523A>G
  hgvsp: ENSP00000252444.5:p.Asp175Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2397A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.355A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.269A>G
  hgvsp: ENSP00000397829.2:p.Asp90Gly
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.269A>G
  hgvsp: ENSP00000453346.1:p.Asp90Gly
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp90Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-11213423-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213423
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213423
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.274C>G
  hgvsp: ENSP00000453346.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2402C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.274C>G
  hgvsp: ENSP00000453557.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.274C>G
  hgvsp: ENSP00000437639.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.274C>G
  hgvsp: ENSP00000454071.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.274C>G
  hgvsp: ENSP00000397829.2:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.528C>G
  hgvsp: ENSP00000252444.5:p.Gln177Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.360C>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln92Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-11213429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213429
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213429
    reference: chr 19
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.366G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.280G>A
  hgvsp: ENSP00000454071.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.534G>A
  hgvsp: ENSP00000252444.5:p.Asp179Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.280G>A
  hgvsp: ENSP00000453557.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.280G>A
  hgvsp: ENSP00000437639.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.280G>A
  hgvsp: ENSP00000453346.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.280G>A
  hgvsp: ENSP00000397829.2:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2408G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp94Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-11213434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213434
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213434
    reference: chr 19
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.285C>T
  hgvsp: ENST00000558518.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.285C>T
  hgvsp: ENST00000455727.2:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.539C>T
  hgvsp: ENST00000252444.5:c.539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.285C>T
  hgvsp: ENST00000545707.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.285C>T
  hgvsp: ENST00000557933.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.285C>T
  hgvsp: ENST00000558013.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.371C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2413C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys95Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-11213435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213435
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213435
    reference: chr 19
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.286G>A
  hgvsp: ENSP00000453346.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.540G>A
  hgvsp: ENSP00000252444.5:p.Asp181Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.372G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.286G>A
  hgvsp: ENSP00000454071.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.286G>A
  hgvsp: ENSP00000397829.2:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.286G>A
  hgvsp: ENSP00000437639.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2414G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.286G>A
  hgvsp: ENSP00000453557.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp96Asn
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-11213438-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213438
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213438
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.543A>G
  hgvsp: ENSP00000252444.5:p.Asn182Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.375A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.289A>G
  hgvsp: ENSP00000453346.1:p.Asn97Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.289A>G
  hgvsp: ENSP00000397829.2:p.Asn97Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.289A>G
  hgvsp: ENSP00000453557.1:p.Asn97Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.289A>G
  hgvsp: ENSP00000454071.1:p.Asn97Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.289A>G
  hgvsp: ENSP00000437639.1:p.Asn97Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2417A>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn97Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-11213440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213440
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213440
    reference: chr 19
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.291C>T
  hgvsp: ENST00000545707.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2419C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.291C>T
  hgvsp: ENST00000558013.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.291C>T
  hgvsp: ENST00000557933.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.291C>T
  hgvsp: ENST00000558518.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.545C>T
  hgvsp: ENST00000252444.5:c.545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.291C>T
  hgvsp: ENST00000455727.2:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.377C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn97Asn
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-11213441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213441
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213441
    reference: chr 19
allele count: 7
allele frequency: 5.765682656826568e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.292G>A
  hgvsp: ENSP00000454071.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.292G>A
  hgvsp: ENSP00000437639.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.292G>A
  hgvsp: ENSP00000453557.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.292G>A
  hgvsp: ENSP00000453346.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.378G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.546G>A
  hgvsp: ENSP00000252444.5:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.292G>A
  hgvsp: ENSP00000397829.2:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2420G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly98Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11213445-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213445
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213445
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2424C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.296C>G
  hgvsp: ENSP00000397829.2:p.Ser99Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.296C>G
  hgvsp: ENSP00000437639.1:p.Ser99Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.296C>G
  hgvsp: ENSP00000454071.1:p.Ser99Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.296C>G
  hgvsp: ENSP00000453346.1:p.Ser99Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.382C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.296C>G
  hgvsp: ENSP00000453557.1:p.Ser99Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.550C>G
  hgvsp: ENSP00000252444.5:p.Ser184Ter
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser99Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

19-11213449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213449
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.300C>T
  hgvsp: ENST00000558518.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.300C>T
  hgvsp: ENST00000558013.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2428C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.386C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.554C>T
  hgvsp: ENST00000252444.5:c.554C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.300C>T
  hgvsp: ENST00000557933.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.300C>T
  hgvsp: ENST00000545707.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.300C>T
  hgvsp: ENST00000455727.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp100Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-11213450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213450
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213450
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.301G>A
  hgvsp: ENSP00000437639.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.301G>A
  hgvsp: ENSP00000454071.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.301G>A
  hgvsp: ENSP00000397829.2:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2429G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.301G>A
  hgvsp: ENSP00000453557.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.301G>A
  hgvsp: ENSP00000453346.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.555G>A
  hgvsp: ENSP00000252444.5:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.387G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47312
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu101Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

19-11213451-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213450
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.303delG
  hgvsp: ENSP00000454071.1:p.Glu101AspfsTer105
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.389delG
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.303delG
  hgvsp: ENSP00000437639.1:p.Glu101AspfsTer37
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.557delG
  hgvsp: ENSP00000252444.5:p.Glu186AspfsTer105
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.303delG
  hgvsp: ENSP00000453557.1:p.Glu101AspfsTer105
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.303delG
  hgvsp: ENSP00000397829.2:p.Glu101AspfsTer5
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.303delG
  hgvsp: ENSP00000453346.1:p.Glu101AspfsTer105
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2431delG
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47312
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu101AspfsTer105
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: AG
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-11213453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213453
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.304C>T
  hgvsp: ENSP00000454071.1:p.Gln102Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.390C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2432C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.558C>T
  hgvsp: ENSP00000252444.5:p.Gln187Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.304C>T
  hgvsp: ENSP00000437639.1:p.Gln102Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.304C>T
  hgvsp: ENSP00000397829.2:p.Gln102Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.304C>T
  hgvsp: ENSP00000453557.1:p.Gln102Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.304C>T
  hgvsp: ENSP00000453346.1:p.Gln102Ter
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln102Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

19-11213458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213458
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213458
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.395C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.309C>T
  hgvsp: ENST00000455727.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.563C>T
  hgvsp: ENST00000252444.5:c.563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.309C>T
  hgvsp: ENST00000558518.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.309C>T
  hgvsp: ENST00000558013.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.309C>T
  hgvsp: ENST00000545707.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.309C>T
  hgvsp: ENST00000557933.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.190+2437C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly103Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-11213462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213462
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213462
    reference: chr 19
allele count: 8
allele frequency: 6.589677270555675e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.399C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313C>T
  hgvsp: ENSP00000453346.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313C>T
  hgvsp: ENSP00000453557.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313C>T
  hgvsp: ENST00000455727.2:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313C>T
  hgvsp: ENSP00000437639.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567C>T
  hgvsp: ENSP00000252444.5:p.Pro190Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313C>T
  hgvsp: ENSP00000454071.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2434C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47311
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro105Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-11213463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213463
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213463
    reference: chr 19
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+1G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.400G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+1G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+1G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+1G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+1G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2433G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+1G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: c.313+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

19-11213463-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213463
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213463
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.400G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+1G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: not_provided&pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2433G>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: c.313+1G>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-11213477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213477
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213477
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.414G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+15G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2419G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+15G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+15G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+15G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+15G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+15G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47306
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-11213486-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213486
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213486
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+24A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+24A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2410A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+24A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+24A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.423A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+24A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+24A>C
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

19-11213507-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213507
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213507
    reference: chr 19
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2389G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+45G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.444G>C
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47294
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-11213509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213509
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213509
    reference: chr 19
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+47G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+47G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.446G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+47G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+47G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2387G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+47G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+47G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-11213510-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213510
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213510
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+48A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2386A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+48A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+48A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.447A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+48A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+48A>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+48A>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-11213511-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213511
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213511
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+49G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.448G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2385G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+49G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+49G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+49G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+49G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+49G>T
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

19-11213511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213511
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213511
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2385G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+49G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+49G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.448G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+49G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+49G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+49G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+49G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-11213514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11213514
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11213514
    reference: chr 19
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.313+52G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.313+52G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.313+52G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130164
  ensembl transcript: ENST00000557958
  gene symbol: LDLR
  hgvsc: ENST00000557958.1:n.451G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-2382G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.567+52G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.313+52G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.313+52G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

19-11215846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215846
    reference: chr 19
allele count: 6344
allele frequency: 5.380466126132238e-2
allele num: 117908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-50T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1395T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-50T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-50T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-50T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2222T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-50T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.25e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.75e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 20559
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 1702
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 7
num of homozygotes: 370
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-11215849-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215849
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215849
    reference: chr 19
allele count: 1
allele frequency: 8.477306251165629e-6
allele num: 117962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-47G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-47G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-47G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2219G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1392G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-47G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-47G>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-11215861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215861
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215861
    reference: chr 19
allele count: 6
allele frequency: 5.083539499101908e-5
allele num: 118028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2207C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-35C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-35C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1380C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-35C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-35C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-35C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-11215862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215862
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215862
    reference: chr 19
allele count: 13
allele frequency: 1.100892569821994e-4
allele num: 118086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-34G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-34G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-34G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2206G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1379G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-34G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-34G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-11215862-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215862
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215862
    reference: chr 19
allele count: 1
allele frequency: 8.468404383246109e-6
allele num: 118086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1379G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-34G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2206G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-34G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-34G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-34G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-34G>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

19-11215865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215865
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215865
    reference: chr 19
allele count: 2
allele frequency: 1.692591526886816e-5
allele num: 118162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2203G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1376G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-31G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

19-11215876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215876
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215876
    reference: chr 19
allele count: 3
allele frequency: 2.535068446848065e-5
allele num: 118340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-20C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2192C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-20C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-20C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-20C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-20C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1365C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5510
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-11215877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11215877
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11215877
    reference: chr 19
allele count: 1
allele frequency: 8.449085808915476e-6
allele num: 118356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.314-19G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.191-19G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.568-19G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.314-19G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.314-2191G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.314-1364G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.314-19G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 7707
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1031
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39032
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

FS
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

DP
type: SiteQuality
SIO_000300: 2.262497e6

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7695
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223990208078335e-4
allele num: 16340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.083e1

DP
type: SiteQuality
SIO_000300: 2.250183e6

FS
type: SiteQuality
SIO_000300: 2.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 4.966e0

QD
type: SiteQuality
SIO_000300: 1.326e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.581e0

DP
type: SiteQuality
SIO_000300: 2.245754e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033152355242804e-5
allele num: 65938
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 4.966e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.581e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 2.245754e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6783
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520034048762692e-5
allele num: 65788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.229043e6

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.67e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528164063693878e-5
allele num: 65438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.3566e1

QD
type: SiteQuality
SIO_000300: 1.426e1

VQSLOD
type: SiteQuality
SIO_000300: -2.132e0

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.819e0

DP
type: SiteQuality
SIO_000300: 2.17933e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7661
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.888888888888889e-5
allele num: 11250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.167e0

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 3.052e0

QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 2.143142e6

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.188495364868077e-4
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.538e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

QD
type: SiteQuality
SIO_000300: 1.639e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.1195e6

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
all individuals: 5083
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variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.188777936281503e-4
allele num: 8412
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 888
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Latino
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allele frequency: 8.92379082634303e-5
allele num: 11206
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
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African
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allele count: 1
allele frequency: 1.005631536604988e-4
allele num: 9944
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
num of homozygotes: 0

South Asian
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.091572373709269e-5
allele num: 64692
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 9.307520476545048e-5
allele num: 10744
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.593981127263453e-5
allele num: 62736
num of homozygotes: 0

Latino
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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South Asian
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Other
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African
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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DP
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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Other
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East Asian
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European (Non-Finnish)
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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African
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Latino
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European (Finnish)
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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East Asian
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Latino
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European (Finnish)
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FS
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MQ
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
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Latino
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Other
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 66740
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Latino
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FS
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DP
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
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Latino
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Other
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European (Finnish)
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South Asian
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African
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East Asian
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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African
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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East Asian
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VQSLOD
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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Other
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European (Finnish)
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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African
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South Asian
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

FS
type: SiteQuality
SIO_000300: 6.112e0

DP
type: SiteQuality
SIO_000300: 3.664666e6

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1961
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
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SIO_000300: 3.665108e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.458e0

DP
type: SiteQuality
SIO_000300: 3.664594e6

VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.36e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.994e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 3.664663e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.48e0

MQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.664162e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.511e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.024e0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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East Asian
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allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 1.922337562475971e-4
allele num: 10404
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 3.664063e6

VQSLOD
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.919e0

QD
type: SiteQuality
SIO_000300: 1.08e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 3.663545e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47315
bin: 9.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198681450404555e-4
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 3.66369e6

GenotypeQuality
all individuals: 2861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.934812760055479e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 3.663544e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.46e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.197000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 9.17e-1

DP
type: SiteQuality
SIO_000300: 3.662925e6

MQ
type: SiteQuality
SIO_000300: 5.695e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 3.662939e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
SIO_000300: -1.411e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

BaseQRankSum
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SIO_000300: -2.15e0

FS
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.845e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.662816e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.662755e6

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.991e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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BaseQRankSum
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SIO_000300: -4.827e0

DP
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QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
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ReadPosRankSum
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SIO_000300: -1.182e0

DP
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.9e1

InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
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European (Finnish)
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allele frequency: 7.559721802237678e-4
allele num: 6614
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African
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Latino
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European (Non-Finnish)
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allele frequency: 2.997062878379188e-5
allele num: 66732
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

BaseQRankSum
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MQ
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 7.49243264303054e-5
allele num: 66734
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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East Asian
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BaseQRankSum
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ClippingRankSum
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DP
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QD
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
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MQ
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VQSLOD
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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MQRankSum
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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MQRankSum
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66714
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African
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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BaseQRankSum
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.764e0

DP
type: SiteQuality
SIO_000300: 3.654371e6

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47282
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.65375e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 2.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 8895
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 199
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3356
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 24373
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1697
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1330
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 667
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 10848
bin: 9.75e1
variant carriers: 5943

African
type: Population
allele count: 1287
allele frequency: 1.313533374157991e-1
allele num: 9798
num of homozygotes: 93

European (Finnish)
type: Population
allele count: 142
allele frequency: 2.147610405323654e-2
allele num: 6612
num of homozygotes: 2

Latino
type: Population
allele count: 1816
allele frequency: 1.577210352614209e-1
allele num: 11514
num of homozygotes: 165

South Asian
type: Population
allele count: 966
allele frequency: 5.863785358747117e-2
allele num: 16474
num of homozygotes: 33

East Asian
type: Population
allele count: 948
allele frequency: 1.115031757233592e-1
allele num: 8502
num of homozygotes: 59

European (Non-Finnish)
type: Population
allele count: 1157
allele frequency: 1.804147824731015e-2
allele num: 64130
num of homozygotes: 17

Other
type: Population
allele count: 28
allele frequency: 3.189066059225513e-2
allele num: 878
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

FS
type: SiteQuality
SIO_000300: 7.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.131348e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.06e-2

QD
type: SiteQuality
SIO_000300: 1.57e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559138108453647e-5
allele num: 64138
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 1.111e0

DP
type: SiteQuality
SIO_000300: 1.840974e6

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5528
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64186
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.469812630117973e-4
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.066e1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

DP
type: SiteQuality
SIO_000300: 1.844148e6

FS
type: SiteQuality
SIO_000300: 4.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.273e0

MQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 3114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5520
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.524390243902439e-3
allele num: 8528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.84485e6

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 2.296e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.155e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeQuality
all individuals: 27758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5520
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557195801800118e-5
allele num: 64218
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

FS
type: SiteQuality
SIO_000300: 2.296e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.84485e6

QD
type: SiteQuality
SIO_000300: 1.155e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5512
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

FS
type: SiteQuality
SIO_000300: 2.785e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.041e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.845638e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.106554830692762e-5
allele num: 64380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.522e0

MQRankSum
type: SiteQuality
SIO_000300: -1.279e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.849448e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1