19-11226728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226728
    reference: chr 19
allele count: 3
allele frequency: 2.485789569626966e-5
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-42C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-42C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-11226729-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226729
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226729
    reference: chr 19
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-41C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-41C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8515
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-11226730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226730
    reference: chr 19
allele count: 13
allele frequency: 1.077068385557341e-4
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-40C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-11226731-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226731
    reference: chr 19
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-39G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-39G>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-11226731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226731
    reference: chr 19
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-39G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-39G>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8534
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-11226748-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226748
    reference: chr 19
allele count: 4
allele frequency: 3.308738378056447e-5
allele num: 120892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-22C>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-22C>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8678
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-11226753-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226753
    reference: chr 19
allele count: 2
allele frequency: 1.653466492501529e-5
allele num: 120958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-17C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-17C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15025
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

19-11226759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226759
    reference: chr 19
allele count: 3
allele frequency: 2.479052010511181e-5
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-11C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-11C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

19-11226760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226760
    reference: chr 19
allele count: 2
allele frequency: 1.65264671371201e-5
allele num: 121018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1206-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1587-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1464-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1083-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1841-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1587-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1587-10C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.308-10C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15023
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-11226775-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226775
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226775
    reference: chr 19
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1211T>A
  hgvsp: ENSP00000437639.1:p.Met404Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1592T>A
  hgvsp: ENSP00000453346.1:p.Met531Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1592T>A
  hgvsp: ENSP00000454071.1:p.Met531Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1088T>A
  hgvsp: ENSP00000397829.2:p.Met363Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1846T>A
  hgvsp: ENSP00000252444.5:p.Met616Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1592T>A
  hgvsp: ENSP00000453557.1:p.Met531Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1469T>A
  hgvsp: ENSP00000440520.1:p.Met490Lys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.313T>A
  hgvsp: ENSP00000453696.1:p.Met105Lys
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15025
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met531Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-11226781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226781
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226781
    reference: chr 19
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1217G>A
  hgvsp: ENSP00000437639.1:p.Trp406Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1598G>A
  hgvsp: ENSP00000453346.1:p.Trp533Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1475G>A
  hgvsp: ENSP00000440520.1:p.Trp492Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1598G>A
  hgvsp: ENSP00000453557.1:p.Trp533Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1094G>A
  hgvsp: ENSP00000397829.2:p.Trp365Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1598G>A
  hgvsp: ENSP00000454071.1:p.Trp533Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1852G>A
  hgvsp: ENSP00000252444.5:p.Trp618Ter
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.319G>A
  hgvsp: ENSP00000453696.1:p.Trp107Ter
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp533Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

19-11226794-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226794
    reference: chr 19
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1865A>T
  hgvsp: ENST00000252444.5:c.1865A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.332A>T
  hgvsp: ENST00000559340.1:c.332A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1230A>T
  hgvsp: ENST00000545707.1:c.1230A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1611A>T
  hgvsp: ENST00000557933.1:c.1611A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1611A>T
  hgvsp: ENST00000558518.1:c.1611A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1488A>T
  hgvsp: ENST00000535915.1:c.1488A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1611A>T
  hgvsp: ENST00000558013.1:c.1611A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1107A>T
  hgvsp: ENST00000455727.2:c.1107A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly537Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-11226796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226796
    reference: chr 19
allele count: 3
allele frequency: 2.473288484368817e-5
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.334C>T
  hgvsp: ENSP00000453696.1:p.Thr112Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1613C>T
  hgvsp: ENSP00000454071.1:p.Thr538Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1232C>T
  hgvsp: ENSP00000437639.1:p.Thr411Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1490C>T
  hgvsp: ENSP00000440520.1:p.Thr497Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1109C>T
  hgvsp: ENSP00000397829.2:p.Thr370Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1867C>T
  hgvsp: ENSP00000252444.5:p.Thr623Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1613C>T
  hgvsp: ENSP00000453557.1:p.Thr538Ile
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1613C>T
  hgvsp: ENSP00000453346.1:p.Thr538Ile
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr538Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-11226800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226800
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226800
    reference: chr 19
allele count: 9229
allele frequency: 7.609161664797837e-2
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1617C>T
  hgvsp: ENST00000557933.1:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1871C>T
  hgvsp: ENST00000252444.5:c.1871C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.338C>T
  hgvsp: ENST00000559340.1:c.338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1236C>T
  hgvsp: ENST00000545707.1:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1617C>T
  hgvsp: ENST00000558518.1:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1113C>T
  hgvsp: ENST00000455727.2:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1617C>T
  hgvsp: ENST00000558013.1:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1494C>T
  hgvsp: ENST00000535915.1:c.1494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 14095
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 3.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 4.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 18412
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 9.75e1
  variant carriers: 7372
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro539Pro
num of homozygotes: 566
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

19-11226801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226801
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226801
    reference: chr 19
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1618G>A
  hgvsp: ENSP00000453346.1:p.Ala540Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1618G>A
  hgvsp: ENSP00000454071.1:p.Ala540Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1872G>A
  hgvsp: ENSP00000252444.5:p.Ala625Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1495G>A
  hgvsp: ENSP00000440520.1:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1237G>A
  hgvsp: ENSP00000437639.1:p.Ala413Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1114G>A
  hgvsp: ENSP00000397829.2:p.Ala372Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1618G>A
  hgvsp: ENSP00000453557.1:p.Ala540Thr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.339G>A
  hgvsp: ENSP00000453696.1:p.Ala114Thr
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala540Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11226806-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226806
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226806
    reference: chr 19
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1119G>C
  hgvsp: ENSP00000397829.2:p.Lys373Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1500G>C
  hgvsp: ENSP00000440520.1:p.Lys500Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1623G>C
  hgvsp: ENSP00000453346.1:p.Lys541Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1877G>C
  hgvsp: ENSP00000252444.5:p.Lys626Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1623G>C
  hgvsp: ENSP00000454071.1:p.Lys541Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1242G>C
  hgvsp: ENSP00000437639.1:p.Lys414Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1623G>C
  hgvsp: ENSP00000453557.1:p.Lys541Asn
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.344G>C
  hgvsp: ENSP00000453696.1:p.Lys115Asn
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys541Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

19-11226817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226817
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226817
    reference: chr 19
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1511G>A
  hgvsp: ENSP00000440520.1:p.Gly504Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1888G>A
  hgvsp: ENSP00000252444.5:p.Gly630Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1253G>A
  hgvsp: ENSP00000437639.1:p.Gly418Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1634G>A
  hgvsp: ENSP00000453557.1:p.Gly545Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.355G>A
  hgvsp: ENSP00000453696.1:p.Gly119Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1634G>A
  hgvsp: ENSP00000453346.1:p.Gly545Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1130G>A
  hgvsp: ENSP00000397829.2:p.Gly377Glu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1634G>A
  hgvsp: ENSP00000454071.1:p.Gly545Glu
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly545Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

19-11226818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226818
    reference: chr 19
allele count: 5
allele frequency: 4.120041530018623e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1635G>A
  hgvsp: ENST00000558013.1:c.1635G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1635G>A
  hgvsp: ENST00000558518.1:c.1635G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1131G>A
  hgvsp: ENST00000455727.2:c.1131G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.356G>A
  hgvsp: ENST00000559340.1:c.356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1889G>A
  hgvsp: ENST00000252444.5:c.1889G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1512G>A
  hgvsp: ENST00000535915.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1254G>A
  hgvsp: ENST00000545707.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1635G>A
  hgvsp: ENST00000557933.1:c.1635G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly545Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

19-11226828-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226828
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226828
    reference: chr 19
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1899G>C
  hgvsp: ENSP00000252444.5:p.Gly634Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1141G>C
  hgvsp: ENSP00000397829.2:p.Gly381Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1645G>C
  hgvsp: ENSP00000453557.1:p.Gly549Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1645G>C
  hgvsp: ENSP00000454071.1:p.Gly549Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1645G>C
  hgvsp: ENSP00000453346.1:p.Gly549Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1264G>C
  hgvsp: ENSP00000437639.1:p.Gly422Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.366G>C
  hgvsp: ENSP00000453696.1:p.Gly123Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1522G>C
  hgvsp: ENSP00000440520.1:p.Gly508Arg
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly549Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

19-11226829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226829
    reference: chr 19
allele count: 6
allele frequency: 4.943968358602505e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1646G>A
  hgvsp: ENSP00000453346.1:p.Gly549Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1646G>A
  hgvsp: ENSP00000454071.1:p.Gly549Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1265G>A
  hgvsp: ENSP00000437639.1:p.Gly422Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.367G>A
  hgvsp: ENSP00000453696.1:p.Gly123Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1646G>A
  hgvsp: ENSP00000453557.1:p.Gly549Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1142G>A
  hgvsp: ENSP00000397829.2:p.Gly381Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1523G>A
  hgvsp: ENSP00000440520.1:p.Gly508Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1900G>A
  hgvsp: ENSP00000252444.5:p.Gly634Asp
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly549Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-11226834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226834
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.372G>T
  hgvsp: ENSP00000453696.1:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1528G>T
  hgvsp: ENSP00000440520.1:p.Asp510Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1147G>T
  hgvsp: ENSP00000397829.2:p.Asp383Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1651G>T
  hgvsp: ENSP00000453346.1:p.Asp551Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1651G>T
  hgvsp: ENSP00000454071.1:p.Asp551Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1905G>T
  hgvsp: ENSP00000252444.5:p.Asp636Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1651G>T
  hgvsp: ENSP00000453557.1:p.Asp551Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1270G>T
  hgvsp: ENSP00000437639.1:p.Asp424Tyr
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp551Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

19-11226836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226836
    reference: chr 19
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1653C>T
  hgvsp: ENST00000558518.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1907C>T
  hgvsp: ENST00000252444.5:c.1907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1149C>T
  hgvsp: ENST00000455727.2:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1530C>T
  hgvsp: ENST00000535915.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1272C>T
  hgvsp: ENST00000545707.1:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1653C>T
  hgvsp: ENST00000558013.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1653C>T
  hgvsp: ENST00000557933.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.374C>T
  hgvsp: ENST00000559340.1:c.374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp551Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-11226842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226842
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226842
    reference: chr 19
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1278C>T
  hgvsp: ENST00000545707.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.380C>T
  hgvsp: ENST00000559340.1:c.380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1659C>T
  hgvsp: ENST00000558013.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1155C>T
  hgvsp: ENST00000455727.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1913C>T
  hgvsp: ENST00000252444.5:c.1913C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1659C>T
  hgvsp: ENST00000557933.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1536C>T
  hgvsp: ENST00000535915.1:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1659C>T
  hgvsp: ENST00000558518.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr553Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-11226848-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226848
    reference: chr 19
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1665G>T
  hgvsp: ENST00000558013.1:c.1665G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1542G>T
  hgvsp: ENST00000535915.1:c.1542G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1665G>T
  hgvsp: ENST00000558518.1:c.1665G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.386G>T
  hgvsp: ENST00000559340.1:c.386G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1161G>T
  hgvsp: ENST00000455727.2:c.1161G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1665G>T
  hgvsp: ENST00000557933.1:c.1665G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1284G>T
  hgvsp: ENST00000545707.1:c.1284G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1919G>T
  hgvsp: ENST00000252444.5:c.1919G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu555Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-11226854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226854
    reference: chr 19
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1548T>C
  hgvsp: ENST00000535915.1:c.1548T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1671T>C
  hgvsp: ENST00000558013.1:c.1671T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1671T>C
  hgvsp: ENST00000557933.1:c.1671T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1925T>C
  hgvsp: ENST00000252444.5:c.1925T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1167T>C
  hgvsp: ENST00000455727.2:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.392T>C
  hgvsp: ENST00000559340.1:c.392T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1671T>C
  hgvsp: ENST00000558518.1:c.1671T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1290T>C
  hgvsp: ENST00000545707.1:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr557Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-11226874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226874
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226874
    reference: chr 19
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1691A>G
  hgvsp: ENSP00000454071.1:p.Asn564Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1187A>G
  hgvsp: ENSP00000397829.2:p.Asn396Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1945A>G
  hgvsp: ENSP00000252444.5:p.Asn649Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1691A>G
  hgvsp: ENSP00000453557.1:p.Asn564Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1568A>G
  hgvsp: ENSP00000440520.1:p.Asn523Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1691A>G
  hgvsp: ENSP00000453346.1:p.Asn564Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1310A>G
  hgvsp: ENSP00000437639.1:p.Asn437Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.412A>G
  hgvsp: ENSP00000453696.1:p.Asn138Ser
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8371
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn564Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-11226875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226875
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226875
    reference: chr 19
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.413T>C
  hgvsp: ENST00000559340.1:c.413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1569T>C
  hgvsp: ENST00000535915.1:c.1569T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1188T>C
  hgvsp: ENST00000455727.2:c.1188T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1692T>C
  hgvsp: ENST00000557933.1:c.1692T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1692T>C
  hgvsp: ENST00000558518.1:c.1692T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1311T>C
  hgvsp: ENST00000545707.1:c.1311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1692T>C
  hgvsp: ENST00000558013.1:c.1692T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1946T>C
  hgvsp: ENST00000252444.5:c.1946T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn564Asn
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-11226885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226885
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226885
    reference: chr 19
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1702C>T
  hgvsp: ENST00000558013.1:c.1702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1702C>T
  hgvsp: ENST00000558518.1:c.1702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1702C>T
  hgvsp: ENST00000557933.1:c.1702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1321C>T
  hgvsp: ENST00000545707.1:c.1321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1579C>T
  hgvsp: ENST00000535915.1:c.1579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.423C>T
  hgvsp: ENST00000559340.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1198C>T
  hgvsp: ENST00000455727.2:c.1198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1956C>T
  hgvsp: ENST00000252444.5:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu568Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

19-11226896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226896
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226896
    reference: chr 19
allele count: 2
allele frequency: 1.653193142554845e-5
allele num: 120978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+8C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+8C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1705+8C>T
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-11226897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226897
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226897
    reference: chr 19
allele count: 10
allele frequency: 8.266785708380867e-5
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+9G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+9G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21125
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11226904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226904
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226904
    reference: chr 19
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+16A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+16A>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/19-11226906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226906
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226906
    reference: chr 19
allele count: 31
allele frequency: 2.567287784679089e-4
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+18C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+18C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14834
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20385
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8310
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

19-11226908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226908
    reference: chr 19
allele count: 42
allele frequency: 3.479240531495411e-4
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+20G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+20G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20183
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14591
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8299
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-11226911-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226911
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226911
    reference: chr 19
allele count: 9
allele frequency: 7.46441959990711e-5
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+23C>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+23C>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19231
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14002
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-11226913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226913
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226913
    reference: chr 19
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+25A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+25A>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8238
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

19-11226920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226920
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226920
    reference: chr 19
allele count: 1
allele frequency: 8.302337938363443e-6
allele num: 120448
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+32G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+32G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-11226922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226922
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226922
    reference: chr 19
allele count: 6
allele frequency: 4.985459077690071e-5
allele num: 120350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+34C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+34C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16616
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8240
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-11226923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226923
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226923
    reference: chr 19
allele count: 1
allele frequency: 8.319882856049386e-6
allele num: 120194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+35G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7146
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

19-11226925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226925
    reference: chr 19
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+37G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+37G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

19-11226928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226928
    reference: chr 19
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+40C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+40C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-11226929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226929
    reference: chr 19
allele count: 78
allele frequency: 6.499458378468461e-4
allele num: 120010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1582+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1705+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1705+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1705+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1201+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1959+41A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1324+41A>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 9.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

19-11226933-TGGAGGACAGAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11226933
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11226922
    reference: chr 19
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: TGGAGGACAGAC
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-11227484-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227484
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227484
    reference: chr 19
allele count: 14
allele frequency: 1.153174524727357e-4
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+596T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-51T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-51T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44353
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11227490-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227490
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227490
    reference: chr 19
allele count: 13
allele frequency: 1.07080491581826e-4
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+602A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-45A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-45A>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44350
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59212
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-11227493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227493
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227493
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+605G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-42G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-42G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59213
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

19-11227500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227500
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227500
    reference: chr 19
allele count: 4
allele frequency: 3.294784356363876e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+612G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-35G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-35G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

19-11227503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227503
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227503
    reference: chr 19
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+615C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-32C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-32C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-11227504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227504
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227504
    reference: chr 19
allele count: 10
allele frequency: 8.236825198095645e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+616G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-31G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-31G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59215
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-11227512-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227512
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227512
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-23T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+624T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-23T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59215
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-11227512-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227512
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227513
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+626dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-21dupC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-21dupC
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59215
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

19-11227513-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227513
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227510
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-21_1202-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+626_426+628delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-21_1583-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-21_1706-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-21_1706-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-21_1325-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-21_1706-19delCTT
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-21_1960-19delCTT
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: CCTT
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

19-11227516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227516
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227516
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+628T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-19T>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-19T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44343
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-11227519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227519
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227519
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+631C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-16C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-16C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44343
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-11227525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227525
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227525
    reference: chr 19
allele count: 307
allele frequency: 2.528746993509275e-3
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1706-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1325-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1583-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1960-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1706-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1706-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1202-10G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+637G>A
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-11227536-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227536
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227533
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1965_1967delCTC
  hgvsp: ENSP00000252444.5:p.Leu656del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1711_1713delCTC
  hgvsp: ENSP00000453557.1:p.Leu571del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1711_1713delCTC
  hgvsp: ENSP00000453346.1:p.Leu571del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+652_426+654delCTC
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1588_1590delCTC
  hgvsp: ENSP00000440520.1:p.Leu530del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1330_1332delCTC
  hgvsp: ENSP00000437639.1:p.Leu444del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1711_1713delCTC
  hgvsp: ENSP00000454071.1:p.Leu571del
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1207_1209delCTC
  hgvsp: ENSP00000397829.2:p.Leu403del
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu571del
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: TCTC
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-11227539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227539
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227539
    reference: chr 19
allele count: 6
allele frequency: 4.942095118857387e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1329C>T
  hgvsp: ENST00000545707.1:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1710C>T
  hgvsp: ENST00000558518.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1964C>T
  hgvsp: ENST00000252444.5:c.1964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+651C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1206C>T
  hgvsp: ENST00000455727.2:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1587C>T
  hgvsp: ENST00000535915.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1710C>T
  hgvsp: ENST00000557933.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1710C>T
  hgvsp: ENST00000558013.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44384
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59216
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu570Leu
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-11227540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227540
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227540
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1207C>T
  hgvsp: ENSP00000397829.2:p.Leu403Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1965C>T
  hgvsp: ENSP00000252444.5:p.Leu656Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1711C>T
  hgvsp: ENSP00000453346.1:p.Leu571Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1330C>T
  hgvsp: ENSP00000437639.1:p.Leu444Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+652C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1711C>T
  hgvsp: ENSP00000453557.1:p.Leu571Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1711C>T
  hgvsp: ENSP00000454071.1:p.Leu571Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1588C>T
  hgvsp: ENSP00000440520.1:p.Leu530Phe
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu571Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-11227545-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227545
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227545
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1335T>G
  hgvsp: ENSP00000437639.1:p.Ser445Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1593T>G
  hgvsp: ENSP00000440520.1:p.Ser531Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1212T>G
  hgvsp: ENSP00000397829.2:p.Ser404Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1716T>G
  hgvsp: ENSP00000453557.1:p.Ser572Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+657T>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1716T>G
  hgvsp: ENSP00000453346.1:p.Ser572Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1970T>G
  hgvsp: ENSP00000252444.5:p.Ser657Arg
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1716T>G
  hgvsp: ENSP00000454071.1:p.Ser572Arg
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser572Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

19-11227549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227549
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227549
    reference: chr 19
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1597C>T
  hgvsp: ENSP00000440520.1:p.Arg533Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1720C>T
  hgvsp: ENSP00000454071.1:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1339C>T
  hgvsp: ENSP00000437639.1:p.Arg447Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1216C>T
  hgvsp: ENSP00000397829.2:p.Arg406Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1720C>T
  hgvsp: ENSP00000453346.1:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1720C>T
  hgvsp: ENSP00000453557.1:p.Arg574Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1974C>T
  hgvsp: ENSP00000252444.5:p.Arg659Cys
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+661C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg574Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-11227550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227550
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227550
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1721G>A
  hgvsp: ENSP00000454071.1:p.Arg574His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+662G>A
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1598G>A
  hgvsp: ENSP00000440520.1:p.Arg533His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1340G>A
  hgvsp: ENSP00000437639.1:p.Arg447His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1721G>A
  hgvsp: ENSP00000453346.1:p.Arg574His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1721G>A
  hgvsp: ENSP00000453557.1:p.Arg574His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1217G>A
  hgvsp: ENSP00000397829.2:p.Arg406His
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1975G>A
  hgvsp: ENSP00000252444.5:p.Arg659His
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg574His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

19-11227550-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227550
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227550
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1721G>T
  hgvsp: ENSP00000454071.1:p.Arg574Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+662G>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1598G>T
  hgvsp: ENSP00000440520.1:p.Arg533Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1340G>T
  hgvsp: ENSP00000437639.1:p.Arg447Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1217G>T
  hgvsp: ENSP00000397829.2:p.Arg406Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1721G>T
  hgvsp: ENSP00000453557.1:p.Arg574Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1721G>T
  hgvsp: ENSP00000453346.1:p.Arg574Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1975G>T
  hgvsp: ENSP00000252444.5:p.Arg659Leu
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg574Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

19-11227551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227551
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227551
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1976C>T
  hgvsp: ENST00000252444.5:c.1976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1722C>T
  hgvsp: ENST00000558518.1:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1341C>T
  hgvsp: ENST00000545707.1:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1722C>T
  hgvsp: ENST00000557933.1:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1218C>T
  hgvsp: ENST00000455727.2:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1722C>T
  hgvsp: ENST00000558013.1:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+663C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1599C>T
  hgvsp: ENST00000535915.1:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg574Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

19-11227554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227554
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227554
    reference: chr 19
allele count: 14063
allele frequency: 1.158382893197806e-1
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1725C>T
  hgvsp: ENST00000558518.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1979C>T
  hgvsp: ENST00000252444.5:c.1979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1725C>T
  hgvsp: ENST00000557933.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1221C>T
  hgvsp: ENST00000455727.2:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1602C>T
  hgvsp: ENST00000535915.1:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1344C>T
  hgvsp: ENST00000545707.1:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1725C>T
  hgvsp: ENST00000558013.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+666C>T
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 45862
  bin: 9.75e1
  variant carriers: 12663
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 8.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 6.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu575Leu
num of homozygotes: 914
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

19-11227559-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227559
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227559
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1226G>C
  hgvsp: ENSP00000397829.2:p.Trp409Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1730G>C
  hgvsp: ENSP00000454071.1:p.Trp577Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1349G>C
  hgvsp: ENSP00000437639.1:p.Trp450Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1730G>C
  hgvsp: ENSP00000453346.1:p.Trp577Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1607G>C
  hgvsp: ENSP00000440520.1:p.Trp536Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1984G>C
  hgvsp: ENSP00000252444.5:p.Trp662Ser
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+671G>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1730G>C
  hgvsp: ENSP00000453557.1:p.Trp577Ser
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp577Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-11227562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227562
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227562
    reference: chr 19
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1733T>C
  hgvsp: ENSP00000453346.1:p.Val578Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1229T>C
  hgvsp: ENSP00000397829.2:p.Val410Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1352T>C
  hgvsp: ENSP00000437639.1:p.Val451Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1733T>C
  hgvsp: ENSP00000453557.1:p.Val578Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1733T>C
  hgvsp: ENSP00000454071.1:p.Val578Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1610T>C
  hgvsp: ENSP00000440520.1:p.Val537Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1987T>C
  hgvsp: ENSP00000252444.5:p.Val663Ala
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+674T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42161
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val578Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-11227563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227563
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227563
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1734T>C
  hgvsp: ENST00000558518.1:c.1734T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1734T>C
  hgvsp: ENST00000557933.1:c.1734T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1611T>C
  hgvsp: ENST00000535915.1:c.1611T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1734T>C
  hgvsp: ENST00000558013.1:c.1734T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.1988T>C
  hgvsp: ENST00000252444.5:c.1988T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1230T>C
  hgvsp: ENST00000455727.2:c.1230T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1353T>C
  hgvsp: ENST00000545707.1:c.1353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+675T>C
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val578Val
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-11227576-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227576
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1747C>G
  hgvsp: ENSP00000454071.1:p.His583Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1366C>G
  hgvsp: ENSP00000437639.1:p.His456Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1747C>G
  hgvsp: ENSP00000453557.1:p.His583Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1747C>G
  hgvsp: ENSP00000453346.1:p.His583Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.2001C>G
  hgvsp: ENSP00000252444.5:p.His668Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1624C>G
  hgvsp: ENSP00000440520.1:p.His542Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1243C>G
  hgvsp: ENSP00000397829.2:p.His415Asp
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+688C>G
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58974
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His583Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-11227576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227576
    reference: chr 19
allele count: 11
allele frequency: 9.060806247014052e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1624C>T
  hgvsp: ENSP00000440520.1:p.His542Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+688C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1747C>T
  hgvsp: ENSP00000453346.1:p.His583Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1366C>T
  hgvsp: ENSP00000437639.1:p.His456Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1243C>T
  hgvsp: ENSP00000397829.2:p.His415Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.2001C>T
  hgvsp: ENSP00000252444.5:p.His668Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1747C>T
  hgvsp: ENSP00000454071.1:p.His583Tyr
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1747C>T
  hgvsp: ENSP00000453557.1:p.His583Tyr
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42161
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His583Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

19-11227580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227580
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227580
    reference: chr 19
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1751C>T
  hgvsp: ENSP00000453346.1:p.Ser584Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1751C>T
  hgvsp: ENSP00000454071.1:p.Ser584Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1247C>T
  hgvsp: ENSP00000397829.2:p.Ser416Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.2005C>T
  hgvsp: ENSP00000252444.5:p.Ser669Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1370C>T
  hgvsp: ENSP00000437639.1:p.Ser457Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1628C>T
  hgvsp: ENSP00000440520.1:p.Ser543Phe
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+692C>T
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1751C>T
  hgvsp: ENSP00000453557.1:p.Ser584Phe
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser584Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/19-11227582-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227582
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1372A>C
  hgvsp: ENSP00000437639.1:p.Ile458Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1753A>C
  hgvsp: ENSP00000453557.1:p.Ile585Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1753A>C
  hgvsp: ENSP00000454071.1:p.Ile585Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1249A>C
  hgvsp: ENSP00000397829.2:p.Ile417Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+694A>C
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1630A>C
  hgvsp: ENSP00000440520.1:p.Ile544Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1753A>C
  hgvsp: ENSP00000453346.1:p.Ile585Leu
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.2007A>C
  hgvsp: ENSP00000252444.5:p.Ile670Leu
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile585Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-11227582-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11227582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11227582
    reference: chr 19
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453557
  ensembl transcript: ENST00000557933
  gene symbol: LDLR
  hgvsc: ENST00000557933.1:c.1753A>G
  hgvsp: ENSP00000453557.1:p.Ile585Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453696
  ensembl transcript: ENST00000559340
  gene symbol: LDLR
  hgvsc: ENST00000559340.1:c.426+694A>G
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000437639
  ensembl transcript: ENST00000545707
  gene symbol: LDLR
  hgvsc: ENST00000545707.1:c.1372A>G
  hgvsp: ENSP00000437639.1:p.Ile458Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000453346
  ensembl transcript: ENST00000558013
  gene symbol: LDLR
  hgvsc: ENST00000558013.1:c.1753A>G
  hgvsp: ENSP00000453346.1:p.Ile585Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000440520
  ensembl transcript: ENST00000535915
  gene symbol: LDLR
  hgvsc: ENST00000535915.1:c.1630A>G
  hgvsp: ENSP00000440520.1:p.Ile544Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000397829
  ensembl transcript: ENST00000455727
  gene symbol: LDLR
  hgvsc: ENST00000455727.2:c.1249A>G
  hgvsp: ENSP00000397829.2:p.Ile417Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000454071
  ensembl transcript: ENST00000558518
  gene symbol: LDLR
  hgvsc: ENST00000558518.1:c.1753A>G
  hgvsp: ENSP00000454071.1:p.Ile585Val
  variant of: http://identifiers.org/hgnc/6547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130164
  ensembl protein: ENSP00000252444
  ensembl transcript: ENST00000252444
  gene symbol: LDLR
  hgvsc: ENST00000252444.5:c.2007A>G
  hgvsp: ENSP00000252444.5:p.Ile670Val
  variant of: http://identifiers.org/hgnc/6547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile585Val
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15031
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.529532552240609e-5
allele num: 66232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.131e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 4.543e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

DP
type: SiteQuality
SIO_000300: 2.715535e6

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15032
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21734
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.402e0

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.715793e6

GenotypeQuality
all individuals: 1871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15030
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.038465022191359e-5
allele num: 66242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.044568245125348e-3
allele num: 8616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 2.716273e6

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 15017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 2.716208e6

MQ
type: SiteQuality
SIO_000300: 5.858e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 5.28e0

VQSLOD
type: SiteQuality
SIO_000300: -4.737e0

FS
type: SiteQuality
SIO_000300: 2.3569e1

MQRankSum
type: SiteQuality
SIO_000300: -1.299e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.366e0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.716208e6

VQSLOD
type: SiteQuality
SIO_000300: -4.737e0

FS
type: SiteQuality
SIO_000300: 2.3569e1

MQ
type: SiteQuality
SIO_000300: 5.858e1

MQRankSum
type: SiteQuality
SIO_000300: -1.299e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 5.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.366e0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15028
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22952
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520250723240116e-5
allele num: 66368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.726156e6

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.433e0

QD
type: SiteQuality
SIO_000300: 1.206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.851e0

FS
type: SiteQuality
SIO_000300: 2.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 2.727948e6

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15024
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 9.659969088098918e-5
allele num: 10352
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European (Non-Finnish)
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allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

East Asian
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allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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FS
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InbreedingCoeff
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QD
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DP
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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SIO_000300: -3.5e-2

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.931620629708325e-4
allele num: 10354
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Latino
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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SIO_000300: 9.77e-1

VQSLOD
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele num: 8638
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Other
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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SIO_000300: -1.67e-1

BaseQRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
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African
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 1.66e0

InbreedingCoeff
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DP
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SIO_000300: 2.733968e6

MQ
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SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

East Asian
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allele num: 8640
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South Asian
type: Population
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
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DP
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ClippingRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 1.4093e1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.723e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
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DP
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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variant carriers: 8657

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.107692307692308e-1
allele num: 10400
num of homozygotes: 73

East Asian
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allele frequency: 2.733085328993257e-1
allele num: 8602
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Other
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allele num: 908
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European (Non-Finnish)
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allele frequency: 4.517096580683863e-2
allele num: 66680
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South Asian
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allele frequency: 8.09108527131783e-2
allele num: 16512
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European (Finnish)
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allele frequency: 5.412760810402177e-2
allele num: 6614
num of homozygotes: 9

Latino
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allele frequency: 8.287245074317318e-2
allele num: 11572
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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Latino
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allele num: 11576
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QD
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
SIO_000300: 1.994348e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

FS
type: SiteQuality
SIO_000300: 8.021000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.997361161089121e-5
allele num: 66696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.676e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 1.99407e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.94e-1

DP
type: SiteQuality
SIO_000300: 1.993819e6

FS
type: SiteQuality
SIO_000300: 9.933999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 2.91e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.995771987166032e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.32e1

FS
type: SiteQuality
SIO_000300: 2.031e0

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.993714e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.784e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.993222e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.696e0

QD
type: SiteQuality
SIO_000300: 1.1e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 1.523e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
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allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.462e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -6.197e0

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.993043e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.63e-1

QD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 1.992133e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.716e0

FS
type: SiteQuality
SIO_000300: 1.098e0

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.989266e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.35e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.285e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.988756e6

QD
type: SiteQuality
SIO_000300: 9.67e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 30
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.71e-1

FS
type: SiteQuality
SIO_000300: 9.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.984285e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.96503e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 5.801e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8314
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variant carriers: 10

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.028530155290719e-5
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.631773969430292e-4
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.391e0

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.964242e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.932959e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 3.474635163307853e-3
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
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South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.525e0

FS
type: SiteQuality
SIO_000300: 2.261e0

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.197e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017228374015629e-5
allele num: 66286
num of homozygotes: 0

African
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allele count: 38
allele frequency: 3.674337652291626e-3
allele num: 10342
num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8246
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 8.727695888285493e-4
allele num: 10312
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.895792e6

QD
type: SiteQuality
SIO_000300: 1.225e1

FS
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.596e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 8.279999999999999e0

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.0e-4

VQSLOD
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FS
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SIO_000300: 0.0e0

MQRankSum
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ReadPosRankSum
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SIO_000300: -2.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.842899e6

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

QD
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SIO_000300: 1.606e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.571e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.079903147699757e-5
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 2.823e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.828668e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65980
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 4.975e0

QD
type: SiteQuality
SIO_000300: 9.27e0

DP
type: SiteQuality
SIO_000300: 1.82615e6

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.258e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.806201e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
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VQSLOD
type: SiteQuality
SIO_000300: -4.635e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.795332e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 7.115009746588694e-3
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.513086246267346e-4
allele num: 11386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.786765e6

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517312536036173e-5
allele num: 65906
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.04e1

DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
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East Asian
type: Population
allele count: 14
allele frequency: 1.617749017795239e-3
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.472548e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
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GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.155535012710885e-3
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 5.924e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.876e1

QD
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 9.471522e6

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 14
bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 204
bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 9.470783e6

FS
type: SiteQuality
SIO_000300: 1.7404e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59214
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.611e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.33e1

DP
type: SiteQuality
SIO_000300: 9.47094e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59214
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.864e0

DP
type: SiteQuality
SIO_000300: 9.470617e6

FS
type: SiteQuality
SIO_000300: 1.955e0

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
all individuals: 204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04890913450012e-4
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

FS
type: SiteQuality
SIO_000300: 1.183e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 9.470942e6

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.364e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

DP
type: SiteQuality
SIO_000300: 9.471118e6

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.364e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 9.471118e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59214
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.795e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.38e1

FS
type: SiteQuality
SIO_000300: 2.225e0

DP
type: SiteQuality
SIO_000300: 9.471179e6

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59215
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.471058e6

FS
type: SiteQuality
SIO_000300: 1.744e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.064e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.91e1

QD
type: SiteQuality
SIO_000300: 1.793e1

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
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FS
type: SiteQuality
SIO_000300: 3.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
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SIO_000300: 9.471118e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
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SIO_000300: -3.184e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 213
allele frequency: 3.191680652121793e-3
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 44
allele frequency: 3.800310934531007e-3
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
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South Asian
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allele frequency: 2.483042635658915e-3
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BaseQRankSum
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SIO_000300: -5.375e0

DP
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SIO_000300: 9.485377e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
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SIO_000300: 1.01e0

VQSLOD
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QD
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FS
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
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SIO_000300: 1.22e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.678e1

MQ
type: SiteQuality
SIO_000300: 5.702e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.84e-1

FS
type: SiteQuality
SIO_000300: 1.927e0

DP
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SIO_000300: 9.480806e6

BaseQRankSum
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SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 2.422480620155039e-4
allele num: 16512
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African
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allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.481162e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.595e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.01e0

ReadPosRankSum
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SIO_000300: 1.0e0

BaseQRankSum
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SIO_000300: -6.783e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
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Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
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allele num: 8654
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MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
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VQSLOD
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DP
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QD
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FS
type: SiteQuality
SIO_000300: 9.31e-1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 2.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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VQSLOD
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
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East Asian
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African
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European (Non-Finnish)
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allele count: 2
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South Asian
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.953e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Other
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 9.48095e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 1.736e0

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 139
bin: 8.75e1
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GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
all individuals: 2
bin: 2.75e1
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GenotypeQuality
all individuals: 232
bin: 8.25e1
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GenotypeQuality
all individuals: 1
bin: 3.75e1
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GenotypeQuality
all individuals: 342
bin: 6.25e1
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59216
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.514e0

VQSLOD
type: SiteQuality
SIO_000300: -1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 3.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 9.480647e6

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
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GenotypeQuality
all individuals: 177
bin: 7.75e1
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GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 2
bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59370
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variant carriers: 13147

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 2184
allele frequency: 1.322674418604651e-1
allele num: 16512
num of homozygotes: 141

African
type: Population
allele count: 883
allele frequency: 8.488752163045568e-2
allele num: 10402
num of homozygotes: 39

Latino
type: Population
allele count: 763
allele frequency: 6.590084643288996e-2
allele num: 11578
num of homozygotes: 32

European (Finnish)
type: Population
allele count: 861
allele frequency: 1.301784094345328e-1
allele num: 6614
num of homozygotes: 52

East Asian
type: Population
allele count: 55
allele frequency: 6.355442569909869e-3
allele num: 8654
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 9192
allele frequency: 1.377408817094734e-1
allele num: 66734
num of homozygotes: 636

Other
type: Population
allele count: 125
allele frequency: 1.376651982378854e-1
allele num: 908
num of homozygotes: 11

QD
type: SiteQuality
SIO_000300: 1.611e1

FS
type: SiteQuality
SIO_000300: 1.094e0

DP
type: SiteQuality
SIO_000300: 1.0040391e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.805e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 8.930633e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.358e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.058e0

QD
type: SiteQuality
SIO_000300: 1.3e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 58974
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.525e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 8.93094e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
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GenotypeQuality
all individuals: 58974
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

FS
type: SiteQuality
SIO_000300: 1.625e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 8.930776e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 260
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GenotypeQuality
all individuals: 0
bin: 3.75e1
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GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.962e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 8.931255e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 6.75e1
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 260
bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 58974
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 1
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variant carriers: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.244280101687081e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.962e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.931255e6

FS
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 139
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 424
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.714e0

QD
type: SiteQuality
SIO_000300: 1.397e1

DP
type: SiteQuality
SIO_000300: 8.929671e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58974
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 420
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.892e0

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

DP
type: SiteQuality
SIO_000300: 8.929749e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 5.07e0