22-42033567-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033567
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033566
    reference: chr 22
allele count: 2
allele frequency: 6.270378730875344e-5
allele num: 31896
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.590-41delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.440-41delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.191-41delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.590-41delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.590-41delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.467-41delA
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: GA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

22-42033585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033585
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033585
    reference: chr 22
allele count: 1
allele frequency: 2.691500242235022e-5
allele num: 37154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.467-27C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.440-27C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.191-27C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.590-27C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.590-27C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.590-27C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32938
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

22-42033590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033590
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033590
    reference: chr 22
allele count: 1
allele frequency: 2.467064686436078e-5
allele num: 40534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.590-22C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.191-22C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.590-22C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.440-22C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.590-22C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.467-22C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35240
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

22-42033594-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033594
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033594
    reference: chr 22
allele count: 2
allele frequency: 4.604899613188433e-5
allele num: 43432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.191-18T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.590-18T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.440-18T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.467-18T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.590-18T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.590-18T>C
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

22-42033601-CCTTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033601
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033597
    reference: chr 22
allele count: 1
allele frequency: 2.046999099320396e-5
allele num: 48852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.590-9_590-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.467-9_467-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.440-9_440-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.590-9_590-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.590-9_590-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.191-9_191-6delTTGC
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
hgvs: c.590-9_590-6delTTGC
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CCTTG
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

22-42033643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033643
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033643
    reference: chr 22
allele count: 1
allele frequency: 1.250500200080032e-5
allele num: 79968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.621A>G
  hgvsp: ENST00000360079.3:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.621A>G
  hgvsp: ENST00000359308.4:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.222A>G
  hgvsp: ENST00000428575.2:c.222A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.498A>G
  hgvsp: ENST00000402580.3:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.621A>G
  hgvsp: ENST00000405878.1:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.471A>G
  hgvsp: ENST00000405506.1:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23403
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys207Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

22-42033647-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033647
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033647
    reference: chr 22
allele count: 1
allele frequency: 1.219660934260276e-5
allele num: 81990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.226G>C
  hgvsp: ENSP00000403679.2:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.625G>C
  hgvsp: ENSP00000352257.4:p.Gly209Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.625G>C
  hgvsp: ENSP00000384257.1:p.Gly209Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.625G>C
  hgvsp: ENSP00000353192.3:p.Gly209Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.502G>C
  hgvsp: ENSP00000384941.3:p.Gly168Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.475G>C
  hgvsp: ENSP00000384082.1:p.Gly159Arg
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly209Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

22-42033651-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033651
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033651
    reference: chr 22
allele count: 1
allele frequency: 1.193032689095681e-5
allele num: 83820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.629G>T
  hgvsp: ENSP00000384257.1:p.Gly210Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.506G>T
  hgvsp: ENSP00000384941.3:p.Gly169Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.479G>T
  hgvsp: ENSP00000384082.1:p.Gly160Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.629G>T
  hgvsp: ENSP00000352257.4:p.Gly210Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.230G>T
  hgvsp: ENSP00000403679.2:p.Gly77Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.629G>T
  hgvsp: ENSP00000353192.3:p.Gly210Val
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly210Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

22-42033667-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033667
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033667
    reference: chr 22
allele count: 1
allele frequency: 1.111605157847932e-5
allele num: 89960
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.645G>C
  hgvsp: ENSP00000352257.4:p.Leu215Phe
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.645G>C
  hgvsp: ENSP00000353192.3:p.Leu215Phe
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.522G>C
  hgvsp: ENSP00000384941.3:p.Leu174Phe
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.495G>C
  hgvsp: ENSP00000384082.1:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.645G>C
  hgvsp: ENSP00000384257.1:p.Leu215Phe
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.246G>C
  hgvsp: ENSP00000403679.2:p.Leu82Phe
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu215Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

22-42033673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033673
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033673
    reference: chr 22
allele count: 1
allele frequency: 1.081806183604146e-5
allele num: 92438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.501C>T
  hgvsp: ENST00000405506.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.528C>T
  hgvsp: ENST00000402580.3:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.651C>T
  hgvsp: ENST00000360079.3:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.651C>T
  hgvsp: ENST00000359308.4:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.651C>T
  hgvsp: ENST00000405878.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.252C>T
  hgvsp: ENST00000428575.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr217Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

22-42033679-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033679
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033679
    reference: chr 22
allele count: 1
allele frequency: 1.047032709301839e-5
allele num: 95508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.258T>G
  hgvsp: ENSP00000403679.2:p.Asp86Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.507T>G
  hgvsp: ENSP00000384082.1:p.Asp169Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.657T>G
  hgvsp: ENSP00000384257.1:p.Asp219Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.657T>G
  hgvsp: ENSP00000353192.3:p.Asp219Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.534T>G
  hgvsp: ENSP00000384941.3:p.Asp178Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.657T>G
  hgvsp: ENSP00000352257.4:p.Asp219Glu
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp219Glu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

22-42033685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033685
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033685
    reference: chr 22
allele count: 2
allele frequency: 2.03898540086453e-5
allele num: 98088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.663C>T
  hgvsp: ENST00000359308.4:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.540C>T
  hgvsp: ENST00000402580.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.663C>T
  hgvsp: ENST00000360079.3:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.663C>T
  hgvsp: ENST00000405878.1:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.264C>T
  hgvsp: ENST00000428575.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.513C>T
  hgvsp: ENST00000405506.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30900
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile221Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

22-42033686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033686
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033686
    reference: chr 22
allele count: 1
allele frequency: 1.01181803464465e-5
allele num: 98832
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.664A>G
  hgvsp: ENSP00000352257.4:p.Ser222Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.541A>G
  hgvsp: ENSP00000384941.3:p.Ser181Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.664A>G
  hgvsp: ENSP00000353192.3:p.Ser222Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.514A>G
  hgvsp: ENSP00000384082.1:p.Ser172Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.265A>G
  hgvsp: ENSP00000403679.2:p.Ser89Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.664A>G
  hgvsp: ENSP00000384257.1:p.Ser222Gly
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser222Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/22-42033696-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033696
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033696
    reference: chr 22
allele count: 1
allele frequency: 9.532706716745152e-6
allele num: 104902
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.674A>C
  hgvsp: ENSP00000352257.4:p.Glu225Ala
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.674A>C
  hgvsp: ENSP00000384257.1:p.Glu225Ala
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.275A>C
  hgvsp: ENSP00000403679.2:p.Glu92Ala
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.551A>C
  hgvsp: ENSP00000384941.3:p.Glu184Ala
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.674A>C
  hgvsp: ENSP00000353192.3:p.Glu225Ala
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.524A>C
  hgvsp: ENSP00000384082.1:p.Glu175Ala
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu225Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

22-42033699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033699
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033699
    reference: chr 22
allele count: 2
allele frequency: 1.881750780926574e-5
allele num: 106284
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.677A>G
  hgvsp: ENSP00000352257.4:p.Asp226Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.527A>G
  hgvsp: ENSP00000384082.1:p.Asp176Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.677A>G
  hgvsp: ENSP00000384257.1:p.Asp226Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.677A>G
  hgvsp: ENSP00000353192.3:p.Asp226Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.278A>G
  hgvsp: ENSP00000403679.2:p.Asp93Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.554A>G
  hgvsp: ENSP00000384941.3:p.Asp185Gly
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp226Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

22-42033700-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033700
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033700
    reference: chr 22
allele count: 1
allele frequency: 9.3711929528629e-6
allele num: 106710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.528T>C
  hgvsp: ENST00000405506.1:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.678T>C
  hgvsp: ENST00000360079.3:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.555T>C
  hgvsp: ENST00000402580.3:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.678T>C
  hgvsp: ENST00000359308.4:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.279T>C
  hgvsp: ENST00000428575.2:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.678T>C
  hgvsp: ENST00000405878.1:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp226Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

22-42033700-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033700
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033700
    reference: chr 22
allele count: 1
allele frequency: 9.3711929528629e-6
allele num: 106710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.678T>G
  hgvsp: ENSP00000384257.1:p.Asp226Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.279T>G
  hgvsp: ENSP00000403679.2:p.Asp93Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.528T>G
  hgvsp: ENSP00000384082.1:p.Asp176Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.678T>G
  hgvsp: ENSP00000353192.3:p.Asp226Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.555T>G
  hgvsp: ENSP00000384941.3:p.Asp185Glu
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.678T>G
  hgvsp: ENSP00000352257.4:p.Asp226Glu
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp226Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

22-42033705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033705
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033705
    reference: chr 22
allele count: 1
allele frequency: 9.180544589905073e-6
allele num: 108926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.533A>G
  hgvsp: ENSP00000384082.1:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.683A>G
  hgvsp: ENSP00000384257.1:p.Asp228Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.560A>G
  hgvsp: ENSP00000384941.3:p.Asp187Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.683A>G
  hgvsp: ENSP00000352257.4:p.Asp228Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.284A>G
  hgvsp: ENSP00000403679.2:p.Asp95Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.683A>G
  hgvsp: ENSP00000353192.3:p.Asp228Gly
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp228Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

22-42033754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033754
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033754
    reference: chr 22
allele count: 4
allele frequency: 3.381291315153257e-5
allele num: 118298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.582G>A
  hgvsp: ENST00000405506.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.732G>A
  hgvsp: ENST00000360079.3:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.732G>A
  hgvsp: ENST00000359308.4:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.732G>A
  hgvsp: ENST00000405878.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.609G>A
  hgvsp: ENST00000402580.3:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.333G>A
  hgvsp: ENST00000428575.2:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg244Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-42033761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033761
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033761
    reference: chr 22
allele count: 1
allele frequency: 8.45809016324114e-6
allele num: 118230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.739C>T
  hgvsp: ENSP00000353192.3:p.Arg247Cys
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.589C>T
  hgvsp: ENSP00000384082.1:p.Arg197Cys
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.739C>T
  hgvsp: ENSP00000384257.1:p.Arg247Cys
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.616C>T
  hgvsp: ENSP00000384941.3:p.Arg206Cys
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.739C>T
  hgvsp: ENSP00000352257.4:p.Arg247Cys
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.340C>T
  hgvsp: ENSP00000403679.2:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg247Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-42033763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033763
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033763
    reference: chr 22
allele count: 6
allele frequency: 5.075970356333119e-5
allele num: 118204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.741C>T
  hgvsp: ENST00000405878.1:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.741C>T
  hgvsp: ENST00000359308.4:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.342C>T
  hgvsp: ENST00000428575.2:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.591C>T
  hgvsp: ENST00000405506.1:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.741C>T
  hgvsp: ENST00000360079.3:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.618C>T
  hgvsp: ENST00000402580.3:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg247Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

22-42033764-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033764
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033764
    reference: chr 22
allele count: 2
allele frequency: 1.692018747567723e-5
allele num: 118202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.619G>T
  hgvsp: ENSP00000384941.3:p.Ala207Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.592G>T
  hgvsp: ENSP00000384082.1:p.Ala198Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.343G>T
  hgvsp: ENSP00000403679.2:p.Ala115Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.742G>T
  hgvsp: ENSP00000352257.4:p.Ala248Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.742G>T
  hgvsp: ENSP00000353192.3:p.Ala248Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.742G>T
  hgvsp: ENSP00000384257.1:p.Ala248Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala248Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/22-42033765-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033765
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033765
    reference: chr 22
allele count: 1
allele frequency: 8.463960456376747e-6
allele num: 118148
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.743C>A
  hgvsp: ENSP00000352257.4:p.Ala248Asp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.344C>A
  hgvsp: ENSP00000403679.2:p.Ala115Asp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.593C>A
  hgvsp: ENSP00000384082.1:p.Ala198Asp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.620C>A
  hgvsp: ENSP00000384941.3:p.Ala207Asp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.743C>A
  hgvsp: ENSP00000384257.1:p.Ala248Asp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.743C>A
  hgvsp: ENSP00000353192.3:p.Ala248Asp
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala248Asp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

22-42033769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033769
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033769
    reference: chr 22
allele count: 1
allele frequency: 8.470269354565475e-6
allele num: 118060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.348G>A
  hgvsp: ENST00000428575.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.747G>A
  hgvsp: ENST00000359308.4:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.747G>A
  hgvsp: ENST00000360079.3:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.597G>A
  hgvsp: ENST00000405506.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.747G>A
  hgvsp: ENST00000405878.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.624G>A
  hgvsp: ENST00000402580.3:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys249Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

22-42033787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033787
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033787
    reference: chr 22
allele count: 3
allele frequency: 2.570517873667615e-5
allele num: 116708
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.765A>G
  hgvsp: ENST00000359308.4:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.615A>G
  hgvsp: ENST00000405506.1:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.765A>G
  hgvsp: ENST00000360079.3:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.765A>G
  hgvsp: ENST00000405878.1:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.642A>G
  hgvsp: ENST00000402580.3:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.366A>G
  hgvsp: ENST00000428575.2:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37554
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala255Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

22-42033798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033798
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033798
    reference: chr 22
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+3G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+3G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+3G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+3G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+3G>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
hgvs: c.773+3G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

22-42033799-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033799
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033799
    reference: chr 22
allele count: 1
allele frequency: 8.686889745995344e-6
allele num: 115116
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+4T>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+4T>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+4T>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+4T>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+4T>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+4T>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12796
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
hgvs: c.773+4T>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

22-42033802-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033802
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033802
    reference: chr 22
allele count: 1
allele frequency: 8.740647507167331e-6
allele num: 114408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+7A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+7A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+7A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+7A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+7A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+7A>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
hgvs: c.773+7A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

22-42033810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033810
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033810
    reference: chr 22
allele count: 3
allele frequency: 2.661225938082143e-5
allele num: 112730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+15C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-42033811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033811
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033811
    reference: chr 22
allele count: 1
allele frequency: 8.878313830637286e-6
allele num: 112634
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+16G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+16G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+16G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+16G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+16G>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26175
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

22-42033815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033815
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033815
    reference: chr 22
allele count: 2
allele frequency: 1.785969424203458e-5
allele num: 111984
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+20C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+20C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+20C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+20C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+20C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+20C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/22-42033821-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033821
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033821
    reference: chr 22
allele count: 225
allele frequency: 2.030209517622219e-3
allele num: 110826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+26C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+26C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+26C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+26C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+26C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+26C>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18306
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 18647
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 9.75e1
  variant carriers: 222
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

22-42033847-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42033847
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42033847
    reference: chr 22
allele count: 5
allele frequency: 5.126312335958005e-5
allele num: 97536
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.773+52G>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.773+52G>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.773+52G>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.374+52G>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.623+52G>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.650+52G>C
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

22-42042859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042859
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042859
    reference: chr 22
allele count: 1
allele frequency: 8.837513477208053e-6
allele num: 113154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-41C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-41C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-41C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-41C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-41C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-41C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

22-42042860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042860
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042860
    reference: chr 22
allele count: 21
allele frequency: 1.85361720156763e-4
allele num: 113292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-40A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-40A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-40A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-40A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-40A>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-40A>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35744
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

22-42042866-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042866
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042866
    reference: chr 22
allele count: 4
allele frequency: 3.525098702763678e-5
allele num: 113472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-34T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-34T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-34T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-34T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-34T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-34T>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-42042878-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042878
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042878
    reference: chr 22
allele count: 1
allele frequency: 8.72691730373163e-6
allele num: 114588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-22C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-22C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-22C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-22C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-22C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-22C>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/22-42042882-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042882
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042882
    reference: chr 22
allele count: 14
allele frequency: 1.216397031991242e-4
allele num: 115094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-18C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-18C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-18C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-18C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-18C>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-18C>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

22-42042889-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042889
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042889
    reference: chr 22
allele count: 2
allele frequency: 1.722474851867163e-5
allele num: 116112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-11T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-11T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-11T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-11T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-11T>C
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-11T>C
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35756
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

22-42042889-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042889
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042889
    reference: chr 22
allele count: 80
allele frequency: 6.889899407468651e-4
allele num: 116112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-11T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-11T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-11T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-11T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-11T>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-11T>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-42042889-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042889
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042888
    reference: chr 22
allele count: 14
allele frequency: 1.205732396307014e-4
allele num: 116112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-10delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-10delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-10delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-10delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-10delA
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-10delA
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: TA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

22-42042894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042894
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042894
    reference: chr 22
allele count: 3
allele frequency: 2.559421229545959e-5
allele num: 117214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-6C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-6C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-6C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-6C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-6C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-6C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35716
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7846
  bin: 6.25e1
  variant carriers: 0
hgvs: c.774-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

22-42042895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042895
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042895
    reference: chr 22
allele count: 1
allele frequency: 8.51469636592759e-6
allele num: 117444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774-5C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774-5C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624-5C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375-5C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651-5C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774-5C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.25e1
  variant carriers: 0
hgvs: c.774-5C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

22-42042900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042900
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042900
    reference: chr 22
allele count: 1
allele frequency: 8.453657052040712e-6
allele num: 118292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.375G>A
  hgvsp: ENST00000428575.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.624G>A
  hgvsp: ENST00000405506.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.774G>A
  hgvsp: ENST00000405878.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.774G>A
  hgvsp: ENST00000360079.3:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.774G>A
  hgvsp: ENST00000359308.4:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.651G>A
  hgvsp: ENST00000402580.3:c.651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
hgvs: c.774G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

22-42042915-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042915
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042915
    reference: chr 22
allele count: 1
allele frequency: 8.362043014349267e-6
allele num: 119588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.789C>G
  hgvsp: ENST00000360079.3:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.639C>G
  hgvsp: ENST00000405506.1:c.639C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.789C>G
  hgvsp: ENST00000359308.4:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.789C>G
  hgvsp: ENST00000405878.1:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.390C>G
  hgvsp: ENST00000428575.2:c.390C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.666C>G
  hgvsp: ENST00000402580.3:c.666C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu263Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

22-42042917-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042917
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042917
    reference: chr 22
allele count: 2
allele frequency: 1.671206778414693e-5
allele num: 119674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.641A>G
  hgvsp: ENSP00000384082.1:p.Asn214Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.791A>G
  hgvsp: ENSP00000353192.3:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.392A>G
  hgvsp: ENSP00000403679.2:p.Asn131Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.791A>G
  hgvsp: ENSP00000384257.1:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.791A>G
  hgvsp: ENSP00000352257.4:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.668A>G
  hgvsp: ENSP00000384941.3:p.Asn223Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn264Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-42042923-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042923
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042923
    reference: chr 22
allele count: 1
allele frequency: 8.338475393159114e-6
allele num: 119926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.398A>T
  hgvsp: ENSP00000403679.2:p.Asp133Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.674A>T
  hgvsp: ENSP00000384941.3:p.Asp225Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.797A>T
  hgvsp: ENSP00000352257.4:p.Asp266Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.797A>T
  hgvsp: ENSP00000384257.1:p.Asp266Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.647A>T
  hgvsp: ENSP00000384082.1:p.Asp216Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.797A>T
  hgvsp: ENSP00000353192.3:p.Asp266Val
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35713
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp266Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

22-42042926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042926
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042926
    reference: chr 22
allele count: 2
allele frequency: 1.665861500274867e-5
allele num: 120058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.800T>C
  hgvsp: ENSP00000352257.4:p.Ile267Thr
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.650T>C
  hgvsp: ENSP00000384082.1:p.Ile217Thr
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.677T>C
  hgvsp: ENSP00000384941.3:p.Ile226Thr
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.401T>C
  hgvsp: ENSP00000403679.2:p.Ile134Thr
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.800T>C
  hgvsp: ENSP00000384257.1:p.Ile267Thr
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.800T>C
  hgvsp: ENSP00000353192.3:p.Ile267Thr
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile267Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

22-42042927-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042927
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042927
    reference: chr 22
allele count: 1
allele frequency: 8.325978718798394e-6
allele num: 120106
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.801A>G
  hgvsp: ENSP00000352257.4:p.Ile267Met
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.651A>G
  hgvsp: ENSP00000384082.1:p.Ile217Met
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.801A>G
  hgvsp: ENSP00000353192.3:p.Ile267Met
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.678A>G
  hgvsp: ENSP00000384941.3:p.Ile226Met
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.801A>G
  hgvsp: ENSP00000384257.1:p.Ile267Met
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.402A>G
  hgvsp: ENSP00000403679.2:p.Ile134Met
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile267Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-42042939-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042939
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042939
    reference: chr 22
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.663G>T
  hgvsp: ENST00000405506.1:c.663G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.813G>T
  hgvsp: ENST00000359308.4:c.813G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.690G>T
  hgvsp: ENST00000402580.3:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.414G>T
  hgvsp: ENST00000428575.2:c.414G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.813G>T
  hgvsp: ENST00000360079.3:c.813G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.813G>T
  hgvsp: ENST00000405878.1:c.813G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val271Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

22-42042942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042942
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042942
    reference: chr 22
allele count: 9
allele frequency: 7.464667241722513e-5
allele num: 120568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.693C>T
  hgvsp: ENST00000402580.3:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.816C>T
  hgvsp: ENST00000360079.3:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.816C>T
  hgvsp: ENST00000359308.4:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.666C>T
  hgvsp: ENST00000405506.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.417C>T
  hgvsp: ENST00000428575.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.816C>T
  hgvsp: ENST00000405878.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly272Gly
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

22-42042943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042943
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042943
    reference: chr 22
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.817A>G
  hgvsp: ENSP00000384257.1:p.Ile273Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.418A>G
  hgvsp: ENSP00000403679.2:p.Ile140Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.817A>G
  hgvsp: ENSP00000352257.4:p.Ile273Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.817A>G
  hgvsp: ENSP00000353192.3:p.Ile273Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.667A>G
  hgvsp: ENSP00000384082.1:p.Ile223Val
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.694A>G
  hgvsp: ENSP00000384941.3:p.Ile232Val
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile273Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

22-42042973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042973
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042973
    reference: chr 22
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.847C>T
  hgvsp: ENSP00000384257.1:p.Pro283Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.448C>T
  hgvsp: ENSP00000403679.2:p.Pro150Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.724C>T
  hgvsp: ENSP00000384941.3:p.Pro242Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.847C>T
  hgvsp: ENSP00000352257.4:p.Pro283Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.697C>T
  hgvsp: ENSP00000384082.1:p.Pro233Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.847C>T
  hgvsp: ENSP00000353192.3:p.Pro283Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro283Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

22-42042975-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042975
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042975
    reference: chr 22
allele count: 2
allele frequency: 1.651936896010573e-5
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.849T>G
  hgvsp: ENST00000405878.1:c.849T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.699T>G
  hgvsp: ENST00000405506.1:c.699T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.849T>G
  hgvsp: ENST00000359308.4:c.849T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.849T>G
  hgvsp: ENST00000360079.3:c.849T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.450T>G
  hgvsp: ENST00000428575.2:c.450T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.726T>G
  hgvsp: ENST00000402580.3:c.726T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro283Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

22-42042976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42042976
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42042976
    reference: chr 22
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.850C>T
  hgvsp: ENSP00000352257.4:p.Pro284Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.850C>T
  hgvsp: ENSP00000384257.1:p.Pro284Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.700C>T
  hgvsp: ENSP00000384082.1:p.Pro234Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.451C>T
  hgvsp: ENSP00000403679.2:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.850C>T
  hgvsp: ENSP00000353192.3:p.Pro284Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.727C>T
  hgvsp: ENSP00000384941.3:p.Pro243Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro284Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

22-42043004-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043004
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043004
    reference: chr 22
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.878A>G
  hgvsp: ENSP00000384257.1:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.878A>G
  hgvsp: ENSP00000352257.4:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.479A>G
  hgvsp: ENSP00000403679.2:p.Asn160Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.728A>G
  hgvsp: ENSP00000384082.1:p.Asn243Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.878A>G
  hgvsp: ENSP00000353192.3:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.755A>G
  hgvsp: ENSP00000384941.3:p.Asn252Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35709
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn293Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

22-42043023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043023
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043023
    reference: chr 22
allele count: 4
allele frequency: 3.300547890949898e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.897G>A
  hgvsp: ENST00000359308.4:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.897G>A
  hgvsp: ENST00000360079.3:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.897G>A
  hgvsp: ENST00000405878.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.774G>A
  hgvsp: ENST00000402580.3:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.498G>A
  hgvsp: ENST00000428575.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.747G>A
  hgvsp: ENST00000405506.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys299Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-42043027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043027
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043027
    reference: chr 22
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.901C>T
  hgvsp: ENSP00000352257.4:p.Arg301Trp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.778C>T
  hgvsp: ENSP00000384941.3:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.901C>T
  hgvsp: ENSP00000384257.1:p.Arg301Trp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.502C>T
  hgvsp: ENSP00000403679.2:p.Arg168Trp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.901C>T
  hgvsp: ENSP00000353192.3:p.Arg301Trp
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.751C>T
  hgvsp: ENSP00000384082.1:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg301Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

22-42043028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043028
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043028
    reference: chr 22
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.779G>A
  hgvsp: ENSP00000384941.3:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.902G>A
  hgvsp: ENSP00000352257.4:p.Arg301Gln
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.752G>A
  hgvsp: ENSP00000384082.1:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.902G>A
  hgvsp: ENSP00000384257.1:p.Arg301Gln
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.503G>A
  hgvsp: ENSP00000403679.2:p.Arg168Gln
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.902G>A
  hgvsp: ENSP00000353192.3:p.Arg301Gln
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg301Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

22-42043037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043037
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043037
    reference: chr 22
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.512A>G
  hgvsp: ENSP00000403679.2:p.Asn171Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.911A>G
  hgvsp: ENSP00000384257.1:p.Asn304Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.911A>G
  hgvsp: ENSP00000352257.4:p.Asn304Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.761A>G
  hgvsp: ENSP00000384082.1:p.Asn254Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.788A>G
  hgvsp: ENSP00000384941.3:p.Asn263Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.911A>G
  hgvsp: ENSP00000353192.3:p.Asn304Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn304Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

22-42043051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043051
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043051
    reference: chr 22
allele count: 3
allele frequency: 2.477455158061639e-5
allele num: 121092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.925G>A
  hgvsp: ENSP00000353192.3:p.Gly309Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.925G>A
  hgvsp: ENSP00000352257.4:p.Gly309Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.775G>A
  hgvsp: ENSP00000384082.1:p.Gly259Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.925G>A
  hgvsp: ENSP00000384257.1:p.Gly309Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.526G>A
  hgvsp: ENSP00000403679.2:p.Gly176Ser
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.802G>A
  hgvsp: ENSP00000384941.3:p.Gly268Ser
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly309Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

22-42043066-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043066
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043066
    reference: chr 22
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.790A>G
  hgvsp: ENSP00000384082.1:p.Ser264Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.541A>G
  hgvsp: ENSP00000403679.2:p.Ser181Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.940A>G
  hgvsp: ENSP00000352257.4:p.Ser314Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.817A>G
  hgvsp: ENSP00000384941.3:p.Ser273Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.940A>G
  hgvsp: ENSP00000384257.1:p.Ser314Gly
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.940A>G
  hgvsp: ENSP00000353192.3:p.Ser314Gly
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35702
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser314Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

22-42043068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043068
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043068
    reference: chr 22
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.942C>T
  hgvsp: ENST00000359308.4:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.942C>T
  hgvsp: ENST00000360079.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.792C>T
  hgvsp: ENST00000405506.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.543C>T
  hgvsp: ENST00000428575.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.819C>T
  hgvsp: ENST00000402580.3:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.942C>T
  hgvsp: ENST00000405878.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser314Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

22-42043074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043074
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043074
    reference: chr 22
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.825C>T
  hgvsp: ENST00000402580.3:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.948C>T
  hgvsp: ENST00000359308.4:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.948C>T
  hgvsp: ENST00000360079.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.549C>T
  hgvsp: ENST00000428575.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.798C>T
  hgvsp: ENST00000405506.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.948C>T
  hgvsp: ENST00000405878.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35701
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr316Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

22-42043076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043076
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043076
    reference: chr 22
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.950A>G
  hgvsp: ENSP00000352257.4:p.Lys317Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.551A>G
  hgvsp: ENSP00000403679.2:p.Lys184Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.950A>G
  hgvsp: ENSP00000353192.3:p.Lys317Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.950A>G
  hgvsp: ENSP00000384257.1:p.Lys317Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.827A>G
  hgvsp: ENSP00000384941.3:p.Lys276Arg
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.800A>G
  hgvsp: ENSP00000384082.1:p.Lys267Arg
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys317Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

22-42043077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043077
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043077
    reference: chr 22
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.828G>A
  hgvsp: ENST00000402580.3:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.552G>A
  hgvsp: ENST00000428575.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.951G>A
  hgvsp: ENST00000359308.4:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.801G>A
  hgvsp: ENST00000405506.1:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.951G>A
  hgvsp: ENST00000360079.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.951G>A
  hgvsp: ENST00000405878.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys317Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

22-42043083-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043083
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043083
    reference: chr 22
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.834T>C
  hgvsp: ENST00000402580.3:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.957T>C
  hgvsp: ENST00000405878.1:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.957T>C
  hgvsp: ENST00000359308.4:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.807T>C
  hgvsp: ENST00000405506.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.558T>C
  hgvsp: ENST00000428575.2:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.957T>C
  hgvsp: ENST00000360079.3:c.957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser319Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

22-42043096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043096
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043096
    reference: chr 22
allele count: 532
allele frequency: 4.415011037527594e-3
allele num: 120498
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+10G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+10G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+10G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+10G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+10G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+10G>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 9.75e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 4
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

22-42043099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043099
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043099
    reference: chr 22
allele count: 1
allele frequency: 8.307027745472669e-6
allele num: 120380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+13G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+13G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+13G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+13G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+13G>A
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+13G>A
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

22-42043100-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043100
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043100
    reference: chr 22
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+14C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+14C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+14C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+14C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+14C>G
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+14C>G
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8613
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

22-42043101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043101
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043101
    reference: chr 22
allele count: 7
allele frequency: 5.816272268013826e-5
allele num: 120352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+15C>T
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+15C>T
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35573
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

22-42043103-T-TTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043103
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043106
    reference: chr 22
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: TTTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+29_960+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+29_960+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+29_561+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+29_810+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+29_837+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+29_960+31dupGTT
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35630
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

22-42043103-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42043103
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42043100
    reference: chr 22
allele count: 138
allele frequency: 1.147666411629686e-3
allele num: 120244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384257
  ensembl transcript: ENST00000405878
  gene symbol: XRCC6
  hgvsc: ENST00000405878.1:c.960+29_960+31delGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000403679
  ensembl transcript: ENST00000428575
  gene symbol: XRCC6
  hgvsc: ENST00000428575.2:c.561+29_561+31delGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384082
  ensembl transcript: ENST00000405506
  gene symbol: XRCC6
  hgvsc: ENST00000405506.1:c.810+29_810+31delGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000352257
  ensembl transcript: ENST00000359308
  gene symbol: XRCC6
  hgvsc: ENST00000359308.4:c.960+29_960+31delGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000384941
  ensembl transcript: ENST00000402580
  gene symbol: XRCC6
  hgvsc: ENST00000402580.3:c.837+29_837+31delGTT
  variant of: http://identifiers.org/hgnc/4055
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196419
  ensembl protein: ENSP00000353192
  ensembl transcript: ENST00000360079
  gene symbol: XRCC6
  hgvsc: ENST00000360079.3:c.960+29_960+31delGTT
  variant of: http://identifiers.org/hgnc/4055
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 6.25e1
  variant carriers: 12
num of homozygotes: 1
reference allele: TTTG

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17100
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.62844702467344e-4
allele num: 5512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 5.669e1

QD
type: SiteQuality
SIO_000300: 9.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.63023e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1842
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4212
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.055e1

VQSLOD
type: SiteQuality
SIO_000300: -1.997e0

QD
type: SiteQuality
SIO_000300: 8.32e0

ClippingRankSum
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SIO_000300: -1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 6.62282e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.648568240981777e-5
allele num: 21512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 3.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

DP
type: SiteQuality
SIO_000300: 7.00756e5

MQ
type: SiteQuality
SIO_000300: 5.657e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22948
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.56278831368529e-4
allele num: 7804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 7.30815e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

QD
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SIO_000300: 1.041e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
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SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.708e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.948558067030398e-4
allele num: 5132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.261e1

MQRankSum
type: SiteQuality
SIO_000300: -1.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.539e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 7.87664e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.707067258449983e-4
allele num: 5858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 1.032656e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.798e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.043e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.021e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.098477486232588e-5
allele num: 12348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 2.83e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
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SIO_000300: -1.799e0

ClippingRankSum
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.369e0

FS
type: SiteQuality
SIO_000300: 6.18e0

DP
type: SiteQuality
SIO_000300: 1.049368e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 7.973210014351777e-5
allele num: 12542
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46116
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.007951487892052e-5
allele num: 49802
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 702
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 720
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 6690
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MQ
type: SiteQuality
SIO_000300: 4.956e1

ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.88900222902263e-5
allele num: 52938
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.577e0

MQ
type: SiteQuality
SIO_000300: 4.248e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.494e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.158273e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.162e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

GenotypeQuality
all individuals: 899
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54438
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.302555836979047e-4
allele num: 8686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.588e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.038e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.823e1

DP
type: SiteQuality
SIO_000300: 1.188653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.683e-1

GenotypeQuality
all individuals: 1288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 5.749e1

FS
type: SiteQuality
SIO_000300: 9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.195224e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.073e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.914e0

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 38121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 408
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.321702352630188e-4
allele num: 7566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58376
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.403e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.26e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 2.331e0

DP
type: SiteQuality
SIO_000300: 1.264935e6

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
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variant carriers: 0

GenotypeQuality
all individuals: 1365
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 674
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.086484137331595e-4
allele num: 9204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.689702950221351e-5
allele num: 59182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 1.280282e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.802e-1

MQ
type: SiteQuality
SIO_000300: 5.822e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 2668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
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variant carriers: 0

GenotypeQuality
all individuals: 8443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683161650844947e-5
allele num: 59412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14532
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.693e1

QD
type: SiteQuality
SIO_000300: 8.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.285269e6

GenotypeQuality
all individuals: 8443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 1360
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variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.881365262868153e-5
allele num: 14532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 8.77e0

FS
type: SiteQuality
SIO_000300: 5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.693e1

DP
type: SiteQuality
SIO_000300: 1.285269e6

GenotypeQuality
all individuals: 1416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 1288
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.775568181818182e-4
allele num: 5632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 1.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 4.979e1

DP
type: SiteQuality
SIO_000300: 1.312598e6

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3720
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.914244963451596e-5
allele num: 11218
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.056888698682481e-5
allele num: 65426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.736e1

FS
type: SiteQuality
SIO_000300: 1.194e0

DP
type: SiteQuality
SIO_000300: 1.432895e6

QD
type: SiteQuality
SIO_000300: 1.031e1

VQSLOD
type: SiteQuality
SIO_000300: -4.259e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 65
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530175052025952e-5
allele num: 65352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.707e1

FS
type: SiteQuality
SIO_000300: 2.793e0

DP
type: SiteQuality
SIO_000300: 1.432695e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 87
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GenotypeQuality
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GenotypeQuality
all individuals: 3705
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GenotypeQuality
all individuals: 545
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GenotypeQuality
all individuals: 528
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.906305664410402e-5
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.65157775533315e-5
allele num: 65346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.431547e6

FS
type: SiteQuality
SIO_000300: 4.331e0

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780309773900659e-4
allele num: 11234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.432319e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.773e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.824e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 1.043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.264879087833605e-5
allele num: 15962
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.956e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.525e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 9.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

DP
type: SiteQuality
SIO_000300: 1.429485e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65266
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.904719501335708e-5
allele num: 11230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.427816e6

VQSLOD
type: SiteQuality
SIO_000300: -1.843e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095400235250418e-5
allele num: 64612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017087062652563e-4
allele num: 9832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.399071e6

QD
type: SiteQuality
SIO_000300: 1.097e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -4.284e-1

FS
type: SiteQuality
SIO_000300: 8.811999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.734e1

GenotypeQuality
all individuals: 6667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 58
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.527415143603133e-5
allele num: 15320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.496e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.171e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.358797e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566465114821893e-5
allele num: 63838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.628e1

DP
type: SiteQuality
SIO_000300: 1.350813e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.574158612221768e-5
allele num: 63526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15110
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.323186e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.097755401720159e-4
allele num: 9534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19703136222169e-4
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14774
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.254638e6

FS
type: SiteQuality
SIO_000300: 3.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.003e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196172248803828e-4
allele num: 8360
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5856
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14762
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.24497e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.445e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4322
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 9450
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.207698476343224e-5
allele num: 62350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.049e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 3.194e0

DP
type: SiteQuality
SIO_000300: 1.191751e6

GenotypeQuality
all individuals: 759
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21571
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 9
allele frequency: 8.563273073263558e-4
allele num: 10510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.909722222222222e-3
allele num: 5760
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.208021261174197e-4
allele num: 8278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 170
allele frequency: 2.751343302906713e-3
allele num: 61788
num of homozygotes: 1

South Asian
type: Population
allele count: 28
allele frequency: 1.952852559631748e-3
allele num: 14338
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.344164172723387e-4
allele num: 9356
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 1.589e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.743e1

DP
type: SiteQuality
SIO_000300: 1.132551e6

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeQuality
all individuals: 7589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1701
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9809
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55120
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.77326968973747e-4
allele num: 8380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

DP
type: SiteQuality
SIO_000300: 1.014651e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

QD
type: SiteQuality
SIO_000300: 1.024e1

MQ
type: SiteQuality
SIO_000300: 5.697e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeQuality
all individuals: 2626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4229
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560305819940709e-5
allele num: 64090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.712e1

QD
type: SiteQuality
SIO_000300: 1.204e1

FS
type: SiteQuality
SIO_000300: 6.937e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

DP
type: SiteQuality
SIO_000300: 2.883176e6

GenotypeQuality
all individuals: 974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2436
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2629
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2982
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2492
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64126
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.661957786272229e-3
allele num: 12034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.316e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.884048e6

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeQuality
all individuals: 3153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35735
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.602811035918792e-4
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558312036402169e-5
allele num: 64172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.887617e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.432e1

MQ
type: SiteQuality
SIO_000300: 5.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.569e0

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

FS
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
all individuals: 583
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35733
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.747133560582585e-5
allele num: 12908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.257e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 2.905604e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

QD
type: SiteQuality
SIO_000300: 5.3e0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35742
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 13
allele frequency: 9.806879903439952e-4
allele num: 13256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64576
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

DP
type: SiteQuality
SIO_000300: 2.91235e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

QD
type: SiteQuality
SIO_000300: 1.851e1

MQ
type: SiteQuality
SIO_000300: 5.859e1

GenotypeQuality
all individuals: 2637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.436575204711967e-4
allele num: 13922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

FS
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

DP
type: SiteQuality
SIO_000300: 2.927852e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

GenotypeQuality
all individuals: 7148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35756
bin: 9.75e1
variant carriers: 79

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 6.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64854
num of homozygotes: 0

African
type: Population
allele count: 77
allele frequency: 7.969364520803147e-3
allele num: 9662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.595155709342561e-4
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 2.927852e6

QD
type: SiteQuality
SIO_000300: 1.51e1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

MQ
type: SiteQuality
SIO_000300: 5.799e1

FS
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35756
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 9.337738830627783e-4
allele num: 13922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

FS
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

DP
type: SiteQuality
SIO_000300: 2.927852e6

GenotypeQuality
all individuals: 1627
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535060788407221e-5
allele num: 65144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.364256480218281e-4
allele num: 14660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 3.829e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.93372e6

QD
type: SiteQuality
SIO_000300: 1.546e1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7946
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.751282743721307e-5
allele num: 14812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 2.935835e6

MQ
type: SiteQuality
SIO_000300: 5.841e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 3.999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.776e0

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

QD
type: SiteQuality
SIO_000300: 1.16e1

GenotypeQuality
all individuals: 2529
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.314e0

QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

DP
type: SiteQuality
SIO_000300: 2.944489e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.141e0

MQ
type: SiteQuality
SIO_000300: 5.692e1

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2754
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.144e0

VQSLOD
type: SiteQuality
SIO_000300: -1.683e0

FS
type: SiteQuality
SIO_000300: 1.641e0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 5.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 2.959332e6

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35714
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.227e1

QD
type: SiteQuality
SIO_000300: 1.242e1

VQSLOD
type: SiteQuality
SIO_000300: -1.484e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.571e0

DP
type: SiteQuality
SIO_000300: 2.960421e6

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 2531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.166e0

FS
type: SiteQuality
SIO_000300: 1.592e0

DP
type: SiteQuality
SIO_000300: 2.963358e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.119e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 5.062e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1630
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35713
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.389e1

VQSLOD
type: SiteQuality
SIO_000300: -2.141e0

MQ
type: SiteQuality
SIO_000300: 5.08e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 2.965436e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

FS
type: SiteQuality
SIO_000300: 4.938e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.091e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 9
allele frequency: 1.039981511439797e-3
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.151e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.258e0

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

DP
type: SiteQuality
SIO_000300: 2.970996e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.297e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.976207e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQ
type: SiteQuality
SIO_000300: 5.548e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

FS
type: SiteQuality
SIO_000300: 3.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.005e0

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.979414093428345e-4
allele num: 10104
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.102e0

MQ
type: SiteQuality
SIO_000300: 5.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 2.976432e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.24e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.4e1

FS
type: SiteQuality
SIO_000300: 2.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.053000000000001e0

DP
type: SiteQuality
SIO_000300: 2.97641e6

QD
type: SiteQuality
SIO_000300: 1.623e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

GenotypeQuality
all individuals: 1454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.977424e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.698e1

FS
type: SiteQuality
SIO_000300: 6.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 2.978171e6

VQSLOD
type: SiteQuality
SIO_000300: -5.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.794e1

FS
type: SiteQuality
SIO_000300: 1.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.979e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 2.977692e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.669e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.363e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16506
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East Asian
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

VQSLOD
type: SiteQuality
SIO_000300: -2.582e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.229e1

DP
type: SiteQuality
SIO_000300: 2.974794e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.774e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 1448
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.766e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 2.974954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.798e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

DP
type: SiteQuality
SIO_000300: 2.973608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.816e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 5.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 2.973122e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

MQ
type: SiteQuality
SIO_000300: 5.819e1

GenotypeQuality
all individuals: 2860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
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variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.972868e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 5.028e0

QD
type: SiteQuality
SIO_000300: 1.553e1

VQSLOD
type: SiteQuality
SIO_000300: -1.969e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.181e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 2544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2999
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.698e-1

MQ
type: SiteQuality
SIO_000300: 5.591e1

FS
type: SiteQuality
SIO_000300: 8.9e-1

DP
type: SiteQuality
SIO_000300: 2.970927e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 35821
bin: 9.75e1
variant carriers: 527

African
type: Population
allele count: 5
allele frequency: 4.954419342053111e-4
allele num: 10092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 36
allele frequency: 3.109882515549413e-3
allele num: 11576
num of homozygotes: 1

South Asian
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allele count: 131
allele frequency: 8.117486677407361e-3
allele num: 16138
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
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Other
type: Population
allele count: 6
allele frequency: 6.681514476614699e-3
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 348
allele frequency: 5.230722982113333e-3
allele num: 66530
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.819e1

DP
type: SiteQuality
SIO_000300: 2.973625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.354e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.216585851050602e-5
allele num: 16086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.747e0

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.3e-1

MQRankSum
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DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.802e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

African
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East Asian
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Other
type: Population
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allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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DP
type: SiteQuality
SIO_000300: 2.947506e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele num: 8640
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Other
type: Population
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South Asian
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allele count: 7
allele frequency: 4.355400696864111e-4
allele num: 16072
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Latino
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allele frequency: 0.0e0
allele num: 11576
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.506e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.811e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.712e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0