X-104463729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463729
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463729
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87109
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1147C>T
  hgvsp: ENSP00000399753.1:p.Pro383Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*90C>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14773G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*90C>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14773G>A
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro383Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-104463741-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463741
    reference: chr 0
allele count: 1
allele frequency: 1.147736663299972e-5
allele num: 87128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14761C>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14761C>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1135G>T
  hgvsp: ENSP00000399753.1:p.Asp379Tyr
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000361656
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*78G>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*78G>T
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp379Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

X-104463752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463752
    reference: chr 0
allele count: 16
allele frequency: 1.836357584730687e-4
allele num: 87129
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14750C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14750C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*67G>A
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1124G>A
  hgvsp: ENSP00000399753.1:p.Arg375His
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*67G>A
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Arg375His
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
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X-104463753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463753
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463753
    reference: chr 0
allele count: 1
allele frequency: 1.147723490456679e-5
allele num: 87129
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*66C>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*66C>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1123C>T
  hgvsp: ENSP00000399753.1:p.Arg375Cys
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14749G>A
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Arg375Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
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X-104463758-A-G
type: Variant
location: Region
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    type: ExactPosition
    position: 24104463758
    reference: chr 0
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    type: ExactPosition
    position: 24104463758
    reference: chr 0
allele count: 5
allele frequency: 5.738617452283396e-5
allele num: 87129
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
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annotation: Annotation
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
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genotype quality: GenotypeQuality
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hgvs: p.Val373Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
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X-104463770-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24104463770
    reference: chr 0
allele count: 2
allele frequency: 2.295394291354398e-5
allele num: 87131
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  consequence: intron_variant
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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canonical: true
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hgvs: p.Gln369Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
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site quality: MQRankSum
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X-104463783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463783
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463783
    reference: chr 0
allele count: 1
allele frequency: 1.147710317915758e-5
allele num: 87130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
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hgvs: p.Glu365Lys
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population: Other
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population: East Asian
population: European (Finnish)
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population: Latino
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reference allele: C
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X-104463794-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 5
allele frequency: 5.73855158957879e-5
allele num: 87130
alternate allele: T
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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annotation: Annotation
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  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg361Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-104463796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463796
    reference: chr 0
allele count: 3
allele frequency: 3.443209989899917e-5
allele num: 87128
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1080C>G
  hgvsp: ENSP00000399753.1:p.Asp360Glu
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14706G>C
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*23C>G
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*23C>G
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14706G>C
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp360Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
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X-104463796-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463796
    reference: chr 0
allele count: 1
allele frequency: 1.147736663299972e-5
allele num: 87128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*23C>A
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14706G>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1080C>A
  hgvsp: ENSP00000399753.1:p.Asp360Glu
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*23C>A
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14706G>T
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp360Glu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
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site quality: InbreedingCoeff
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X-104463803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463803
    reference: chr 0
allele count: 17
allele frequency: 1.951331496786042e-4
allele num: 87120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.*16C>T
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14699G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14699G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1073C>T
  hgvsp: ENSP00000399753.1:p.Pro358Leu
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Pro358Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
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site quality: InbreedingCoeff
site quality: DP
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X-104463804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463804
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463804
    reference: chr 0
allele count: 1
allele frequency: 1.147828881670321e-5
allele num: 87121
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
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  hgvsp: ENSP00000399753.1:p.Pro358Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000361656
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro358Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
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site quality: BaseQRankSum
site quality: DP
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site quality: FS
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X-104463807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463807
    reference: chr 0
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    type: ExactPosition
    position: 24104463807
    reference: chr 0
allele count: 2
allele frequency: 2.295631413420261e-5
allele num: 87122
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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annotation: Annotation
  canonical: false
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
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annotation: Annotation
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canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.His357Tyr
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population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
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site quality: DP
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X-104463816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463816
    reference: chr 0
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    type: ExactPosition
    position: 24104463816
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allele count: 1
allele frequency: 1.147868408365665e-5
allele num: 87118
alternate allele: A
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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annotation: Annotation
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consequence: missense
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population: European (Finnish)
population: Other
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population: South Asian
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population: Latino
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site quality: MQRankSum
site quality: ReadPosRankSum
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X-104463828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463828
    reference: chr 0
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    type: ExactPosition
    position: 24104463828
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allele count: 1
allele frequency: 1.148013362875544e-5
allele num: 87107
alternate allele: A
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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population: East Asian
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X-104463832-C-A
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    reference: chr 0
allele count: 691
allele frequency: 7.934594141490694e-3
allele num: 87087
alternate allele: A
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 135
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hgvs: p.Gly349Val
num of homozygotes: 2
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
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site quality: DP

X-104463832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463832
    reference: chr 0
allele count: 19
allele frequency: 2.181726319657354e-4
allele num: 87087
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.1046G>A
  hgvsp: ENSP00000361659.3:p.Gly349Asp
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1044G>A
  hgvsp: ENST00000413579.1:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.1046G>A
  hgvsp: ENSP00000361656.1:p.Gly349Asp
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 56
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hgvs: p.Gly349Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-104463833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463833
    reference: chr 0
allele count: 1
allele frequency: 1.148158354000184e-5
allele num: 87096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14669C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.1045G>A
  hgvsp: ENSP00000361656.1:p.Gly349Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14669C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
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  hgvsp: ENSP00000361659.3:p.Gly349Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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  hgvsc: ENST00000413579.1:c.1043G>A
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  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly348Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-104463843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463843
    reference: chr 0
allele count: 31
allele frequency: 3.559454370091397e-4
allele num: 87092
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14659A>G
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.1035T>C
  hgvsp: ENST00000372575.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.1033T>C
  hgvsp: ENSP00000399753.1:p.Ser345Pro
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  hgvsc: ENST00000372578.3:c.1035T>C
  hgvsp: ENST00000372578.3:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14659A>G
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ser345Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
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X-104463848-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463848
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463848
    reference: chr 0
allele count: 1
allele frequency: 1.148224271164644e-5
allele num: 87091
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000344976
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/5997
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population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
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X-104463873-C-T
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele count: 5
allele frequency: 5.744485294117647e-5
allele num: 87040
alternate allele: T
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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canonical: true
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population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
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population: Other
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X-104463874-G-A
type: Variant
location: Region
  begin: Position
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    type: ExactPosition
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allele count: 1
allele frequency: 1.14888385933066e-5
allele num: 87041
alternate allele: A
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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hgvs: p.Pro335Leu
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population: East Asian
population: Latino
population: South Asian
population: African
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X-104463876-A-G
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
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allele num: 87039
alternate allele: G
annotation: Annotation
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annotation: Annotation
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population: Latino
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X-104463889-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 2
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annotation: Annotation
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annotation: Annotation
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population: European (Non-Finnish)
population: East Asian
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X-104463890-G-A
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele count: 0
allele frequency: 0.0e0
allele num: 87006
alternate allele: A
annotation: Annotation
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X-104463895-T-C
type: Variant
location: Region
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allele num: 87014
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annotation: Annotation
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annotation: Annotation
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X-104463898-T-C
type: Variant
location: Region
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annotation: Annotation
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annotation: Annotation
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X-104463908-G-T
type: Variant
location: Region
  begin: Position
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population: European (Finnish)
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population: European (Non-Finnish)
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X-104463937-G-A
type: Variant
location: Region
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allele count: 1
allele frequency: 1.150311159168555e-5
allele num: 86933
alternate allele: A
annotation: Annotation
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population: African
population: European (Finnish)
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X-104463944-A-G
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 2
allele frequency: 2.301019351572747e-5
allele num: 86918
alternate allele: G
annotation: Annotation
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population: Latino
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X-104463947-G-A
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 1
allele frequency: 1.150311159168555e-5
allele num: 86933
alternate allele: A
annotation: Annotation
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annotation: Annotation
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X-104463950-G-A
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 20
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allele num: 86878
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annotation: Annotation
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annotation: Annotation
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2888
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genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser309Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

X-104463958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463958
    reference: chr 0
allele count: 6
allele frequency: 6.901152492466242e-5
allele num: 86942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.918C>T
  hgvsp: ENST00000413579.1:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14544G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.920C>T
  hgvsp: ENSP00000361656.1:p.Ala307Val
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.920C>T
  hgvsp: ENSP00000361659.3:p.Ala307Val
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14544G>A
  variant of: http://identifiers.org/hgnc/5997
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 519
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  variant carriers: 0
hgvs: p.Ala307Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
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X-104463960-T-TTGAGTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463966
    reference: chr 0
allele count: 2
allele frequency: 2.300781115188607e-5
allele num: 86927
alternate allele: TTGAGTA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.912_917dupTACTCA
  hgvsp: ENSP00000361656.1:p.His304_Thr305dup
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.910_915dupTACTCA
  hgvsp: ENSP00000399753.1:p.Tyr304_Ser305dup
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.912_917dupTACTCA
  hgvsp: ENSP00000361659.3:p.His304_Thr305dup
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10980
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9452
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  variant carriers: 0
hgvs: p.Tyr304_Ser305dup
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-104463960-TTGAGTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463954
    reference: chr 0
allele count: 3
allele frequency: 3.45117167278291e-5
allele num: 86927
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.912_917delTACTCA
  hgvsp: ENSP00000361659.3:p.His304_Thr305del
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.910_915delTACTCA
  hgvsp: ENSP00000399753.1:p.Tyr304_Ser305del
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.912_917delTACTCA
  hgvsp: ENSP00000361656.1:p.His304_Thr305del
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 61
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr304_Ser305del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: TTGAGTA
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-104463974-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104463974
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104463974
    reference: chr 0
allele count: 1
allele frequency: 1.150059803109762e-5
allele num: 86952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.904C>A
  hgvsp: ENSP00000361656.1:p.His302Asn
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.902C>A
  hgvsp: ENSP00000399753.1:p.Ser301Ter
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.904C>A
  hgvsp: ENSP00000361659.3:p.His302Asn
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14528G>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14528G>T
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
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population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
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X-104463984-C-T
type: Variant
location: Region
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    type: ExactPosition
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allele count: 1
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allele num: 86956
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annotation: Annotation
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annotation: Annotation
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population: South Asian
population: European (Non-Finnish)
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population: Other
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population: Latino
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X-104463990-G-A
type: Variant
location: Region
  begin: Position
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    type: ExactPosition
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allele count: 1
allele frequency: 1.149676366102942e-5
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alternate allele: A
annotation: Annotation
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annotation: Annotation
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population: European (Finnish)
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X-104463998-G-A
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
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allele num: 87006
alternate allele: A
annotation: Annotation
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annotation: Annotation
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X-104464015-G-A
type: Variant
location: Region
  begin: Position
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    position: 24104464015
    reference: chr 0
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    position: 24104464015
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allele count: 17
allele frequency: 1.954067909607117e-4
allele num: 86998
alternate allele: A
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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annotation: Annotation
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canonical: false
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro288Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
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X-104464027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464027
    reference: chr 0
allele count: 1
allele frequency: 1.14957063536769e-5
allele num: 86989
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.849C>T
  hgvsp: ENST00000413579.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro284Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
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site quality: MQRankSum
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X-104464030-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464030
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464030
    reference: chr 0
allele count: 1
allele frequency: 1.149517777292426e-5
allele num: 86993
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
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  hgvsp: ENSP00000399753.1:p.Asn282Lys
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.848C>A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  gene symbol: IL1RAPL2
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
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genotype quality: GenotypeQuality
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hgvs: p.Asn282Lys
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population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
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site quality: VQSLOD
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site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
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site quality: QD
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X-104464034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464034
    reference: chr 0
allele count: 3
allele frequency: 3.448751551938198e-5
allele num: 86988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14468G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133149
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  hgvsc: ENST00000372575.1:c.844C>T
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  ensembl gene: ENSG00000133149
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
canonical: false
consequence: stop gained
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg282Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
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X-104464037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464037
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464037
    reference: chr 0
allele count: 1
allele frequency: 1.149623498304305e-5
allele num: 86985
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
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  gene symbol: TEX13A
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  hgvsp: ENSP00000361659.3:p.Pro281Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14465G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14465G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
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annotation: Annotation
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canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr280Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
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X-104464045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464045
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464045
    reference: chr 0
allele count: 1
allele frequency: 1.149742457689478e-5
allele num: 86976
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
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  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
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  hgvsp: ENST00000413579.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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annotation: Annotation
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
canonical: false
consequence: missense
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genotype depth: GenotypeDepth
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hgvs: p.Ser278Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
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X-104464050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464050
    reference: chr 0
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    type: ExactPosition
    position: 24104464050
    reference: chr 0
allele count: 1
allele frequency: 1.14980855687528e-5
allele num: 86971
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  ensembl protein: ENSP00000361659
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  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.828T>C
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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canonical: true
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hgvs: p.Tyr276His
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population: Other
population: European (Finnish)
population: European (Non-Finnish)
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population: Latino
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
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X-104464062-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464062
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86800
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
canonical: true
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genotype depth: GenotypeDepth
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hgvs: p.Thr272Pro
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population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
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reference allele: T
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site quality: MQRankSum
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site quality: QD
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X-104464065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464065
    reference: chr 0
allele count: 1
allele frequency: 1.151516547292785e-5
allele num: 86842
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
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  hgvsp: ENSP00000399753.1:p.Glu271Gln
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  consequence: synonymous_variant
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  consequence: synonymous_variant
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  hgvsp: ENST00000372578.3:c.813G>C(p.%3D)
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annotation: Annotation
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annotation: Annotation
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu271Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
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X-104464065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464065
    reference: chr 0
allele count: 1
allele frequency: 1.151516547292785e-5
allele num: 86842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
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  gene symbol: TEX13A
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  hgvsp: ENST00000372575.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14437C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14437C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu271Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
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X-104464069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464069
    reference: chr 0
allele count: 858
allele frequency: 9.886387205309613e-3
allele num: 86786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  gene symbol: TEX13A
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
canonical: false
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hgvs: p.Arg270Gln
num of homozygotes: 12
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
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X-104464070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464070
    reference: chr 0
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    type: ExactPosition
    position: 24104464070
    reference: chr 0
allele count: 1
allele frequency: 1.152113552311716e-5
allele num: 86797
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000361659
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  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.808C>T
  hgvsp: ENSP00000361659.3:p.Arg270Trp
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14432G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
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hgvs: p.Ser269Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
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site quality: InbreedingCoeff
site quality: BaseQRankSum
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X-104464072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464072
    reference: chr 0
allele count: 1
allele frequency: 1.152525182675241e-5
allele num: 86766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
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  hgvsp: ENSP00000361659.3:p.Gly269Asp
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.804G>A
  hgvsp: ENST00000413579.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14430C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14430C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.806G>A
  hgvsp: ENSP00000361656.1:p.Gly269Asp
  variant of: http://identifiers.org/hgnc/11735
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly269Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-104464073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464073
    reference: chr 0
allele count: 3
allele frequency: 3.457734953090063e-5
allele num: 86762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14429C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.805G>A
  hgvsp: ENSP00000361656.1:p.Gly269Ser
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14429C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.803G>A
  hgvsp: ENSP00000399753.1:p.Arg268Gln
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.805G>A
  hgvsp: ENSP00000361659.3:p.Gly269Ser
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg268Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
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site quality: QD

X-104464074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464074
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464074
    reference: chr 0
allele count: 8
allele frequency: 9.220626541573499e-5
allele num: 86762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.804C>T
  hgvsp: ENST00000372578.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.802C>T
  hgvsp: ENSP00000399753.1:p.Arg268Trp
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
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  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.804C>T
  hgvsp: ENST00000372575.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14428G>A
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14428G>A
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg268Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
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X-104464086-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464086
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464083
    reference: chr 0
allele count: 2
allele frequency: 2.311844736507496e-5
allele num: 86511
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14413_357-14411delTCT
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14413_357-14411delTCT
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.789_791delAAG
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
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  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.789_791delAAG
  hgvsp: ENSP00000361659.3:p.Arg265del
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
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  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.787_789delAAG
  hgvsp: ENSP00000399753.1:p.Lys263del
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Lys263del
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: CCTT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
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site quality: DP
site quality: MQ
site quality: QD

X-104464099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464099
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464099
    reference: chr 0
allele count: 145
allele frequency: 1.682017492981927e-3
allele num: 86206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.779T>C
  hgvsp: ENSP00000361659.3:p.Ile260Thr
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14403A>G
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.779T>C
  hgvsp: ENSP00000361656.1:p.Ile260Thr
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
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  hgvsp: ENST00000413579.1:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14403A>G
  variant of: http://identifiers.org/hgnc/5997
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile260Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-104464102-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464102
    reference: chr 0
allele count: 1
allele frequency: 1.162007018522392e-5
allele num: 86058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14400G>C
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.776C>G
  hgvsp: ENSP00000361656.1:p.Pro259Arg
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133149
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  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.776C>G
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
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  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14400G>C
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
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  variant of: http://identifiers.org/hgnc/11735
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro259Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
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X-104464119-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464119
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464119
    reference: chr 0
allele count: 7
allele frequency: 8.215191061872125e-5
allele num: 85208
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl protein: ENSP00000399753
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  gene symbol: TEX13A
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  hgvsp: ENSP00000399753.1:p.Asp253His
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
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  variant of: http://identifiers.org/hgnc/5997
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  hgvsp: ENST00000372578.3:c.759G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
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hgvs: p.Asp253His
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population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
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site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
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X-104464135-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464135
    reference: chr 0
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    type: ExactPosition
    position: 24104464135
    reference: chr 0
allele count: 10
allele frequency: 1.183319922374213e-4
allele num: 84508
alternate allele: G
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
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  gene symbol: IL1RAPL2
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
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hgvs: p.Gln247His
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population: Other
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population: Latino
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population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
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X-104464144-G-C
type: Variant
location: Region
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    reference: chr 0
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allele count: 0
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allele num: 84122
alternate allele: C
annotation: Annotation
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X-104464152-C-T
type: Variant
location: Region
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allele count: 1
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annotation: Annotation
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X-104464153-C-T
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele count: 4
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allele num: 83754
alternate allele: T
annotation: Annotation
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annotation: Annotation
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population: Other
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X-104464168-C-T
type: Variant
location: Region
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allele count: 4
allele frequency: 4.799040191961608e-5
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hgvs: p.Arg237Lys
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population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
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site quality: BaseQRankSum
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X-104464183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24104464183
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allele count: 1
allele frequency: 1.208649092908856e-5
allele num: 82737
alternate allele: T
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
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canonical: false
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hgvs: p.Gly232Glu
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population: African
population: South Asian
population: Other
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population: East Asian
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X-104464186-G-C
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
    position: 24104464186
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allele count: 1
allele frequency: 1.212047754681535e-5
allele num: 82505
alternate allele: C
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11735
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population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
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X-104464189-C-G
type: Variant
location: Region
  begin: Position
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    position: 24104464189
    reference: chr 0
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    type: ExactPosition
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allele count: 14
allele frequency: 1.697607585880755e-4
allele num: 82469
alternate allele: G
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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X-104464194-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 15
allele frequency: 1.824018677951262e-4
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population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
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site quality: MQRankSum
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X-104464195-G-A
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele num: 82205
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annotation: Annotation
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annotation: Annotation
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X-104464195-G-T
type: Variant
location: Region
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    type: ExactPosition
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X-104464201-G-A
type: Variant
location: Region
  begin: Position
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    type: ExactPosition
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allele count: 1
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allele num: 82053
alternate allele: A
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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X-104464207-G-T
type: Variant
location: Region
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro224His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-104464212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464212
    reference: chr 0
allele count: 2
allele frequency: 2.451641373899826e-5
allele num: 81578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.666G>A
  hgvsp: ENSP00000361659.3:p.Trp222Ter
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14290C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14290C>T
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.666G>A
  hgvsp: ENSP00000361656.1:p.Trp222Ter
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.664G>A
  hgvsp: ENSP00000399753.1:p.Glu222Lys
  variant of: http://identifiers.org/hgnc/11735
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6318
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp222Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-104464215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464215
    reference: chr 0
allele count: 3
allele frequency: 3.695445978738868e-5
allele num: 81181
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  hgvsc: ENST00000372582.1:c.357-14287T>C
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsc: ENST00000372575.1:c.663A>G
  hgvsp: ENST00000372575.1:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsc: ENST00000372578.3:c.663A>G
  hgvsp: ENST00000372578.3:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsc: ENST00000413579.1:c.661A>G
  hgvsp: ENSP00000399753.1:p.Met221Val
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  hgvsc: ENST00000344799.4:c.357-14287T>C
  variant of: http://identifiers.org/hgnc/5997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14186
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 264
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met221Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

X-104464228-A-AGCCTCCACAGGGGGAGCCATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24104464249
    reference: chr 0
allele count: 3
allele frequency: 3.746721618583739e-5
allele num: 80070
alternate allele: AGCCTCCACAGGGGGAGCCATG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000361663
  ensembl transcript: ENST00000372582
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361656
  ensembl transcript: ENST00000372575
  gene symbol: TEX13A
  hgvsp: ENSP00000361656.1:p.Pro210_Arg216dup
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000399753
  ensembl transcript: ENST00000413579
  gene symbol: TEX13A
  hgvsp: ENSP00000399753.1:p.Met210_Ala216dup
  variant of: http://identifiers.org/hgnc/11735
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000189108
  ensembl protein: ENSP00000344976
  ensembl transcript: ENST00000344799
  gene symbol: IL1RAPL2
  variant of: http://identifiers.org/hgnc/5997
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000133149
  ensembl protein: ENSP00000361659
  ensembl transcript: ENST00000372578
  gene symbol: TEX13A
  hgvsp: ENSP00000361659.3:p.Pro210_Arg216dup
  variant of: http://identifiers.org/hgnc/11735
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met210_Ala216dup
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-104464228-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24104464228
    reference: chr 0
allele count: 2
allele frequency: 2.497814412389159e-5
allele num: 80070
alternate allele: G
canonical: false
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
hgvs: p.Leu217Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 2.422e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: -3.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

QD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

DP
type: SiteQuality
SIO_000300: 1.769357e6

GenotypeQuality
all individuals: 1827
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.769877e6

QD
type: SiteQuality
SIO_000300: 2.689e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 2.019691996970462e-3
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.57e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.771358e6

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.641e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 2.501e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

DP
type: SiteQuality
SIO_000300: 1.769405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.728e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145462347135808e-4
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.786922494319616e-4
allele num: 7922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.769709e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.46e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 1.123e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

GenotypeQuality
all individuals: 11002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.523977788995457e-4
allele num: 7924
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 1.163e0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.76945e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.049e0

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083593782556153e-5
allele num: 47994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.373e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: -7.413999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.7e-1

DP
type: SiteQuality
SIO_000300: 1.769085e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

QD
type: SiteQuality
SIO_000300: 1.83e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.08e-1

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38541
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.041840306717786e-4
allele num: 47992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 1.155e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

DP
type: SiteQuality
SIO_000300: 1.769073e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.286e0

QD
type: SiteQuality
SIO_000300: 1.7e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.218884120171674e-4
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 1.176e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 1.768683e6

GenotypeQuality
all individuals: 1800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.261988894497728e-4
allele num: 7924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.768683e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 1.176e0

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 16
allele frequency: 2.01994697639187e-3
allele num: 7921
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073076510355188e-4
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

DP
type: SiteQuality
SIO_000300: 1.76898e6

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.455e0

FS
type: SiteQuality
SIO_000300: 5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08385429690756e-5
allele num: 47988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.331e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.767144e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 1.0158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.124e0

QD
type: SiteQuality
SIO_000300: 1.13e1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3567
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167621746650274e-5
allele num: 47989
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.722e1

FS
type: SiteQuality
SIO_000300: 1.432e0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.751e0

DP
type: SiteQuality
SIO_000300: 1.767073e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

DP
type: SiteQuality
SIO_000300: 1.766398e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 1.454e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10973
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262307498106539e-4
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47977
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.121e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 1.567e1

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

DP
type: SiteQuality
SIO_000300: 1.765525e6

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2888
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38170
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1842
bin: 9.75e1
variant carriers: 648

African
type: Population
allele count: 17
allele frequency: 2.145922746781116e-3
allele num: 7922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.93215972520395e-3
allele num: 9316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 632
allele frequency: 1.317682380168046e-2
allele num: 47963
num of homozygotes: 2

Other
type: Population
allele count: 2
allele frequency: 3.210272873194221e-3
allele num: 623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 3.752759381898455e-3
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.940223298093074e-4
allele num: 10121
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.78e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.037e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.339e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 1.784849e6

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.710422617434272e-4
allele num: 47963
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.311537490532694e-4
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

QD
type: SiteQuality
SIO_000300: 1.78e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.037e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 1.784849e6

VQSLOD
type: SiteQuality
SIO_000300: 3.339e1

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084636230977694e-5
allele num: 47970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

DP
type: SiteQuality
SIO_000300: 1.735029e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 3.318e1

GenotypeQuality
all individuals: 38593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11043
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262466860244918e-4
allele num: 7921
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 6.25443022140683e-4
allele num: 47966
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.733562e6

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

FS
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 2.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.527e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084853539038883e-5
allele num: 47965
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7921
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.731308e6

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.743e0

FS
type: SiteQuality
SIO_000300: 9.497e0

QD
type: SiteQuality
SIO_000300: 1.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.978e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7915
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085810232985003e-5
allele num: 47943
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.954132068011072e-4
allele num: 10116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

QD
type: SiteQuality
SIO_000300: 2.252e1

FS
type: SiteQuality
SIO_000300: 3.643e0

DP
type: SiteQuality
SIO_000300: 1.720935e6

VQSLOD
type: SiteQuality
SIO_000300: -2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47943
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.792e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.720354e6

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.249e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

GenotypeQuality
all individuals: 2779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086027785890108e-5
allele num: 47938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 2.803e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

VQSLOD
type: SiteQuality
SIO_000300: -1.682e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.717624e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
all individuals: 2701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.173274351055838e-5
allele num: 47924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7915
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 7.68e-1

QD
type: SiteQuality
SIO_000300: 2.065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

DP
type: SiteQuality
SIO_000300: 1.705757e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47919
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.704376e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 5.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 8.83e0

MQ
type: SiteQuality
SIO_000300: 5.806e1

VQSLOD
type: SiteQuality
SIO_000300: -2.206e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7913
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47930
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

QD
type: SiteQuality
SIO_000300: 1.319e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.699858e6

MQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1230
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 3.2849020846494e-3
allele num: 7915
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.296455424274973e-4
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 1.697643e6

QD
type: SiteQuality
SIO_000300: 1.484e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47912
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.392e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.066e0

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 1.68629e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

GenotypeQuality
all individuals: 9550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
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variant carriers: 0

GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 1025
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variant carriers: 1

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.263423878711308e-4
allele num: 7915
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47881
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.660952e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.797e1

GenotypeQuality
all individuals: 442
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
all individuals: 1017
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variant carriers: 0

GenotypeQuality
all individuals: 1085
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.177545691906005e-5
allele num: 47875
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10093
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0648e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

VQSLOD
type: SiteQuality
SIO_000300: -6.035e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.538e1

DP
type: SiteQuality
SIO_000300: 1.657115e6

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 2907
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variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
all individuals: 1019
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variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088554720133668e-5
allele num: 47880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

FS
type: SiteQuality
SIO_000300: 3.581e0

DP
type: SiteQuality
SIO_000300: 1.65745e6

MQRankSum
type: SiteQuality
SIO_000300: -4.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.8e0

GenotypeQuality
all individuals: 9402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
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variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 9.75e1
variant carriers: 17

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47855
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10079
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 3.03444090426339e-3
allele num: 6591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

FS
type: SiteQuality
SIO_000300: 1.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

DP
type: SiteQuality
SIO_000300: 1.658134e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 37522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 689
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GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.313131313131314e-4
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

FS
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.657607e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.029e0

VQSLOD
type: SiteQuality
SIO_000300: -7.317e-1

QD
type: SiteQuality
SIO_000300: 1.826e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7923
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.176498841021572e-5
allele num: 47887
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

FS
type: SiteQuality
SIO_000300: 8.222e0

MQ
type: SiteQuality
SIO_000300: 4.992e1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.634e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

DP
type: SiteQuality
SIO_000300: 1.658956e6

GenotypeQuality
all individuals: 529
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38019
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7923
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.264748261532357e-5
allele num: 47887
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.658956e6

MQRankSum
type: SiteQuality
SIO_000300: -6.634e0

VQSLOD
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 8.222e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.134e1

MQ
type: SiteQuality
SIO_000300: 4.992e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
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GenotypeQuality
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GenotypeQuality
all individuals: 40045
bin: 6.25e1
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GenotypeQuality
all individuals: 2125
bin: 7.75e1
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GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087334056942473e-5
allele num: 47908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 2.239e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.701e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.086e0

DP
type: SiteQuality
SIO_000300: 1.66172e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 983
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variant carriers: 1

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40209
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7929
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074922068150059e-4
allele num: 9303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

QD
type: SiteQuality
SIO_000300: 6.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 1.664964e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.653e-1

GenotypeQuality
all individuals: 595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08672426025625e-5
allele num: 47922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.667989e6

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.491e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086332436210386e-5
allele num: 47931
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.686e0

QD
type: SiteQuality
SIO_000300: 5.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.671223e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.762e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41824
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.877895088261069e-4
allele num: 47926
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262148176195886e-4
allele num: 7923
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.939625260235947e-4
allele num: 10087
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

QD
type: SiteQuality
SIO_000300: 1.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.03e-2

DP
type: SiteQuality
SIO_000300: 1.673027e6

FS
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.501e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7923
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.058e1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 1.673784e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086550098067855e-5
allele num: 47926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7923
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 2.182e0

DP
type: SiteQuality
SIO_000300: 1.673665e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 1.111e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.835e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.259780907668232e-5
allele num: 47925
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7921
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.673573e6

QD
type: SiteQuality
SIO_000300: 3.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
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variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2740
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variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47925
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262626262626263e-4
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.555e0

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.705e0

DP
type: SiteQuality
SIO_000300: 1.67331e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 42271
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variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086550098067855e-5
allele num: 47926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.672998e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 2.723e1

GenotypeQuality
all individuals: 9085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
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GenotypeQuality
all individuals: 974
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47926
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.931472837421789e-5
allele num: 10069
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

DP
type: SiteQuality
SIO_000300: 1.672609e6

VQSLOD
type: SiteQuality
SIO_000300: -8.389e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.306e1

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 886
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variant carriers: 0

GenotypeQuality
all individuals: 2077
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GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47839
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.21891e2

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 1.667084e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: -2.308e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.548e0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7909
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088903743315508e-5
allele num: 47872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.662104e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7909
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088903743315508e-5
allele num: 47872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

DP
type: SiteQuality
SIO_000300: 1.662104e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2054
bin: 7.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1061
bin: 9.75e1
variant carriers: 637

GenotypeQuality
all individuals: 2674
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 981
bin: 8.25e1
variant carriers: 28

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10027
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.590132827324478e-4
allele num: 7905
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 579
allele frequency: 1.210233685882697e-2
allele num: 47842
num of homozygotes: 4

Other
type: Population
allele count: 8
allele frequency: 1.288244766505636e-2
allele num: 621
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.154243860404998e-4
allele num: 9284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 263
allele frequency: 5.834072759538598e-2
allele num: 4508
num of homozygotes: 8

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.379e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.214e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.671337e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.807e1

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089689472144439e-5
allele num: 47854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

VQSLOD
type: SiteQuality
SIO_000300: -2.202e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.614e0

FS
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.837e1

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 1.64225e6

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090519494094282e-5
allele num: 47835
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7905
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.803e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

FS
type: SiteQuality
SIO_000300: 2.341e0

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

DP
type: SiteQuality
SIO_000300: 1.639744e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

QD
type: SiteQuality
SIO_000300: 9.17e0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47835
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10023
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.795546558704453e-4
allele num: 7904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

DP
type: SiteQuality
SIO_000300: 1.640073e6

VQSLOD
type: SiteQuality
SIO_000300: -1.56e-2

MQ
type: SiteQuality
SIO_000300: 5.885e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.408e1

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.233107015842225e-4
allele num: 9279
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.612903225806452e-3
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.995808801516815e-4
allele num: 10021
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7903
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090606903183994e-5
allele num: 47833
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.64017e6

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 2.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.340000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

GenotypeQuality
all individuals: 395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 466
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079796998164345e-4
allele num: 9261
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.267909217700013e-4
allele num: 7887
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6577
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.625011e6

MQ
type: SiteQuality
SIO_000300: 5.754e1

QD
type: SiteQuality
SIO_000300: 1.757e1

GenotypeQuality
all individuals: 912
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2536
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1965
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 121

Other
type: Population
allele count: 1
allele frequency: 1.633986928104575e-3
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

African
type: Population
allele count: 131
allele frequency: 1.667515274949084e-2
allele num: 7856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.051723775267664e-4
allele num: 47541
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.665511265164644e-4
allele num: 9232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9907
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.764e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.825e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.60244e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.012453174040701e-4
allele num: 9877
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6555
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.374e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 1.589873e6

QD
type: SiteQuality
SIO_000300: 2.973e1

GenotypeQuality
all individuals: 629
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4435
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9143
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 9.005531969638492e-4
allele num: 7773
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6503
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

FS
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.771e1

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

QD
type: SiteQuality
SIO_000300: 1.507e1

DP
type: SiteQuality
SIO_000300: 1.524582e6

GenotypeQuality
all individuals: 2200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.29366106080207e-3
allele num: 7730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9075
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4397
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46573
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 1.465238e6

MQ
type: SiteQuality
SIO_000300: 5.748e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

QD
type: SiteQuality
SIO_000300: 2.212e1

GenotypeQuality
all individuals: 937
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7699
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9657
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9049
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46339
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.295e0

DP
type: SiteQuality
SIO_000300: 1.440772e6

MQ
type: SiteQuality
SIO_000300: 5.843e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.165674066053059e-5
allele num: 46175
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9639
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4341
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.566e1

DP
type: SiteQuality
SIO_000300: 1.427298e6

QD
type: SiteQuality
SIO_000300: 2.856e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.154e-1

GenotypeQuality
all individuals: 29501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4339
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.435573297848747e-4
allele num: 9018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6383
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7679
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9613
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.57e1

MQ
type: SiteQuality
SIO_000300: 5.748e1

FS
type: SiteQuality
SIO_000300: 7.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.425785e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
all individuals: 2289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7478
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.166666666666667e-4
allele num: 9600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45891
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8983
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4312
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQ
type: SiteQuality
SIO_000300: 5.691e1

VQSLOD
type: SiteQuality
SIO_000300: -7.871e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

QD
type: SiteQuality
SIO_000300: 2.832e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.407136e6

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
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variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.3271400132714e-4
allele num: 7535
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9577
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4271
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6311
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8947
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 3.096e1

DP
type: SiteQuality
SIO_000300: 1.39628e6

VQSLOD
type: SiteQuality
SIO_000300: -4.289e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.02e1

GenotypeQuality
all individuals: 2233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8925
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7499
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6303
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.045696957021855e-4
allele num: 9563
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.346e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.589e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.508e1

DP
type: SiteQuality
SIO_000300: 1.395172e6

QD
type: SiteQuality
SIO_000300: 1.358e1

FS
type: SiteQuality
SIO_000300: 4.677e0

GenotypeQuality
all individuals: 1995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45343
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.465201465201465e-3
allele num: 9555
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8939
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.169e0

QD
type: SiteQuality
SIO_000300: 2.408e1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

VQSLOD
type: SiteQuality
SIO_000300: -8.521e-1

FS
type: SiteQuality
SIO_000300: 9.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.75e-2

DP
type: SiteQuality
SIO_000300: 1.39541e6

GenotypeQuality
all individuals: 6309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8923
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4249
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9545
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7449
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.388915432393693e-3
allele num: 6279
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.425e1

DP
type: SiteQuality
SIO_000300: 1.396032e6

QD
type: SiteQuality
SIO_000300: 1.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.927e-1

FS
type: SiteQuality
SIO_000300: 4.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
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variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.047559187094071e-4
allele num: 9546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7451
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.775549188156638e-4
allele num: 6282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45175
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.521e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.658e1

DP
type: SiteQuality
SIO_000300: 1.399271e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.213613724405091e-4
allele num: 45175
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.399271e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.521e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 1.658e1

GenotypeQuality
all individuals: 1792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 293
bin: 9.25e1
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GenotypeQuality
all individuals: 270
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variant carriers: 1

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4229
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.048327916972429e-4
allele num: 9539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

MQ
type: SiteQuality
SIO_000300: 5.586e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: -7.917999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 1.4036e6

QD
type: SiteQuality
SIO_000300: 1.672e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 1019
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
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GenotypeQuality
all individuals: 829
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variant carriers: 0

GenotypeQuality
all individuals: 9418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4213
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6245
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.35666802333469e-4
allele num: 7371
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.577e1

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.398e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 2.699e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 1.398417e6

GenotypeQuality
all individuals: 9768
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9533
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4205
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.205641929796442e-4
allele num: 6239
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8901
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44759
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394223e6

VQSLOD
type: SiteQuality
SIO_000300: -8.564000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.413e1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.859e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 1.511e0

MQ
type: SiteQuality
SIO_000300: 5.591e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 6216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31615
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8885
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9487
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.734611412921475e-5
allele num: 44546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6205
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.277e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -9.716e-1

FS
type: SiteQuality
SIO_000300: 7.731e0

DP
type: SiteQuality
SIO_000300: 1.384483e6

GenotypeQuality
all individuals: 25665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1395
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.833246019634194e-5
allele num: 43903
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6129
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8819
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4087
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.315504e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-1

FS
type: SiteQuality
SIO_000300: 2.257e0

MQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

MQ
type: SiteQuality
SIO_000300: 4.921e1