http://identifiers.org/exac.variant/22-25016396-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016396
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016396
    reference: chr 22
allele count: 1
allele frequency: 1.11470293166871e-5
allele num: 89710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.484C>A
  hgvsp: ENSP00000383233.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.484C>A
  hgvsp: ENSP00000385975.2:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.484C>A
  hgvsp: ENSP00000383232.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.484C>A
  hgvsp: ENSP00000248923.4:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.484C>A
  hgvsp: ENSP00000383231.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.484C>A
  hgvsp: ENSP00000387499.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.484C>A
  hgvsp: ENSP00000393537.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000395271
  ensembl transcript: ENST00000419133
  gene symbol: GGT1
  hgvsc: ENST00000419133.1:c.484C>A
  hgvsp: ENSP00000395271.1:p.Gln162Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.22C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.234C>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln162Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

22-25016419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016419
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016419
    reference: chr 22
allele count: 42
allele frequency: 3.779561570857781e-4
allele num: 111124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.257C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.507C>T
  hgvsp: ENST00000412658.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.507C>T
  hgvsp: ENST00000400380.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000395271
  ensembl transcript: ENST00000419133
  gene symbol: GGT1
  hgvsc: ENST00000419133.1:c.507C>T
  hgvsp: ENST00000419133.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.507C>T
  hgvsp: ENST00000425895.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.507C>T
  hgvsp: ENST00000248923.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.507C>T
  hgvsp: ENST00000400383.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.507C>T
  hgvsp: ENST00000406383.2:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.507C>T
  hgvsp: ENST00000400382.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.45C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37734
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro169Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

22-25016420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016420
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016420
    reference: chr 22
allele count: 1
allele frequency: 8.951910337666058e-6
allele num: 111708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.508G>A
  hgvsp: ENSP00000393537.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.508G>A
  hgvsp: ENSP00000383232.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.508G>A
  hgvsp: ENSP00000387499.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.258G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.508G>A
  hgvsp: ENSP00000383231.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000395271
  ensembl transcript: ENST00000419133
  gene symbol: GGT1
  hgvsc: ENST00000419133.1:c.508G>A
  hgvsp: ENSP00000395271.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.508G>A
  hgvsp: ENSP00000248923.4:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.46G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.508G>A
  hgvsp: ENSP00000383233.1:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.508G>A
  hgvsp: ENSP00000385975.2:p.Val170Met
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val170Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

22-25016421-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016421
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016420
    reference: chr 22
allele count: 1
allele frequency: 8.919333547397339e-6
allele num: 112116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.512delG
  hgvsp: ENSP00000393537.1:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.262delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000395271
  ensembl transcript: ENST00000419133
  gene symbol: GGT1
  hgvsc: ENST00000419133.1:c.512delG
  hgvsp: ENSP00000395271.1:p.Gly171AlafsTer?
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.512delG
  hgvsp: ENSP00000383232.1:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.512delG
  hgvsp: ENSP00000387499.1:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.512delG
  hgvsp: ENSP00000383233.1:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.512delG
  hgvsp: ENSP00000383231.1:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.50delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.512delG
  hgvsp: ENSP00000248923.4:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.512delG
  hgvsp: ENSP00000385975.2:p.Gly171AlafsTer38
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly171AlafsTer38
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: TG
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

22-25016436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016436
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016436
    reference: chr 22
allele count: 4
allele frequency: 3.489122660107116e-5
allele num: 114642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.524C>T
  hgvsp: ENSP00000383231.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.524C>T
  hgvsp: ENSP00000385975.2:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.524C>T
  hgvsp: ENSP00000383232.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.524C>T
  hgvsp: ENSP00000393537.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.274C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.524C>T
  hgvsp: ENSP00000383233.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.524C>T
  hgvsp: ENSP00000387499.1:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.62C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.524C>T
  hgvsp: ENSP00000248923.4:p.Ala175Val
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala175Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

22-25016437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016437
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016437
    reference: chr 22
allele count: 4
allele frequency: 3.483410258643212e-5
allele num: 114830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.525G>A
  hgvsp: ENST00000425895.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.525G>A
  hgvsp: ENST00000412658.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.525G>A
  hgvsp: ENST00000400383.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.525G>A
  hgvsp: ENST00000400382.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.525G>A
  hgvsp: ENST00000406383.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.525G>A
  hgvsp: ENST00000400380.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.525G>A
  hgvsp: ENST00000248923.4:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.275G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.63G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala175Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

22-25016439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016439
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016439
    reference: chr 22
allele count: 1
allele frequency: 8.695198511382016e-6
allele num: 115006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.527C>T
  hgvsp: ENSP00000387499.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.277C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.527C>T
  hgvsp: ENSP00000383231.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.527C>T
  hgvsp: ENSP00000385975.2:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.527C>T
  hgvsp: ENSP00000393537.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.65C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.527C>T
  hgvsp: ENSP00000383233.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.527C>T
  hgvsp: ENSP00000248923.4:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.527C>T
  hgvsp: ENSP00000383232.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala176Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-25016442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016442
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016442
    reference: chr 22
allele count: 493
allele frequency: 4.333380212362e-3
allele num: 113768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.530C>T
  hgvsp: ENSP00000383233.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.530C>T
  hgvsp: ENSP00000248923.4:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.530C>T
  hgvsp: ENSP00000385975.2:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.530C>T
  hgvsp: ENSP00000383232.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.530C>T
  hgvsp: ENSP00000383231.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.280C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.530C>T
  hgvsp: ENSP00000393537.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.68C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.530C>T
  hgvsp: ENSP00000387499.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 38056
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 11
hgvs: p.Ala177Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

22-25016456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016456
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016456
    reference: chr 22
allele count: 2
allele frequency: 1.73235166738848e-5
allele num: 115450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.82C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.544C>T
  hgvsp: ENSP00000385975.2:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.544C>T
  hgvsp: ENSP00000387499.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.544C>T
  hgvsp: ENSP00000383232.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.294C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.544C>T
  hgvsp: ENSP00000248923.4:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.544C>T
  hgvsp: ENSP00000393537.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.544C>T
  hgvsp: ENSP00000383231.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.544C>T
  hgvsp: ENSP00000383233.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 37957
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg182Trp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

22-25016457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016457
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016457
    reference: chr 22
allele count: 4
allele frequency: 3.464223234545234e-5
allele num: 115466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.545G>A
  hgvsp: ENSP00000387499.1:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.545G>A
  hgvsp: ENSP00000385975.2:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.545G>A
  hgvsp: ENSP00000393537.1:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.545G>A
  hgvsp: ENSP00000248923.4:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.83G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.295G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.545G>A
  hgvsp: ENSP00000383231.1:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.545G>A
  hgvsp: ENSP00000383233.1:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.545G>A
  hgvsp: ENSP00000383232.1:p.Arg182Gln
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg182Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

22-25016460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016460
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016460
    reference: chr 22
allele count: 6
allele frequency: 5.19777535214928e-5
allele num: 115434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.548C>T
  hgvsp: ENSP00000383233.1:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.548C>T
  hgvsp: ENSP00000383231.1:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.298C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.548C>T
  hgvsp: ENSP00000385975.2:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.548C>T
  hgvsp: ENSP00000393537.1:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.548C>T
  hgvsp: ENSP00000383232.1:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.86C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.548C>T
  hgvsp: ENSP00000248923.4:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.548C>T
  hgvsp: ENSP00000387499.1:p.Thr183Ile
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr183Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

22-25016461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016461
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016461
    reference: chr 22
allele count: 12
allele frequency: 1.040185846537915e-4
allele num: 115364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.549C>T
  hgvsp: ENST00000412658.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.549C>T
  hgvsp: ENST00000400380.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.549C>T
  hgvsp: ENST00000406383.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.549C>T
  hgvsp: ENST00000248923.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.87C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.549C>T
  hgvsp: ENST00000425895.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.549C>T
  hgvsp: ENST00000400382.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.299C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.549C>T
  hgvsp: ENST00000400383.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr183Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

22-25016462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016462
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016462
    reference: chr 22
allele count: 24
allele frequency: 2.081634777178344e-4
allele num: 115294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.550G>A
  hgvsp: ENSP00000383233.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.88G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.550G>A
  hgvsp: ENSP00000387499.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.550G>A
  hgvsp: ENSP00000383231.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.300G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.550G>A
  hgvsp: ENSP00000248923.4:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.550G>A
  hgvsp: ENSP00000393537.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.550G>A
  hgvsp: ENSP00000385975.2:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.550G>A
  hgvsp: ENSP00000383232.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37692
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 47344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Val184Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/22-25016465-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016465
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016465
    reference: chr 22
allele count: 2
allele frequency: 1.733342577827082e-5
allele num: 115384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.553A>C
  hgvsp: ENSP00000383231.1:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.553A>C
  hgvsp: ENSP00000383232.1:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.303A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.91A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.553A>C
  hgvsp: ENSP00000387499.1:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.553A>C
  hgvsp: ENSP00000393537.1:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.553A>C
  hgvsp: ENSP00000383233.1:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.553A>C
  hgvsp: ENSP00000385975.2:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.553A>C
  hgvsp: ENSP00000248923.4:p.Ile185Leu
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile185Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

22-25016467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016467
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016467
    reference: chr 22
allele count: 1
allele frequency: 8.670470112889521e-6
allele num: 115334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.555C>T
  hgvsp: ENST00000400380.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.555C>T
  hgvsp: ENST00000425895.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.555C>T
  hgvsp: ENST00000400383.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.555C>T
  hgvsp: ENST00000400382.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.555C>T
  hgvsp: ENST00000406383.2:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.555C>T
  hgvsp: ENST00000412658.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.305C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.555C>T
  hgvsp: ENST00000248923.4:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.93C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47207
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile185Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

22-25016468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016468
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016468
    reference: chr 22
allele count: 2
allele frequency: 1.734304543877905e-5
allele num: 115320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.556G>A
  hgvsp: ENSP00000383233.1:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.556G>A
  hgvsp: ENSP00000383232.1:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.556G>A
  hgvsp: ENSP00000383231.1:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.556G>A
  hgvsp: ENSP00000248923.4:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.556G>A
  hgvsp: ENSP00000393537.1:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.556G>A
  hgvsp: ENSP00000385975.2:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.556G>A
  hgvsp: ENSP00000387499.1:p.Glu186Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.94G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.306G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu186Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

22-25016483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016483
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016483
    reference: chr 22
allele count: 2
allele frequency: 1.74076524039968e-5
allele num: 114892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.571T>C
  hgvsp: ENST00000406383.2:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.571T>C
  hgvsp: ENST00000400380.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.571T>C
  hgvsp: ENST00000425895.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.571T>C
  hgvsp: ENST00000248923.4:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.571T>C
  hgvsp: ENST00000400382.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.571T>C
  hgvsp: ENST00000412658.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.571T>C
  hgvsp: ENST00000400383.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.109T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.321T>C
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu191Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

22-25016486-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016486
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016486
    reference: chr 22
allele count: 1
allele frequency: 8.756107384900968e-6
allele num: 114206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.574T>C
  hgvsp: ENSP00000383231.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.574T>C
  hgvsp: ENSP00000387499.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.574T>C
  hgvsp: ENSP00000385975.2:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.574T>C
  hgvsp: ENSP00000383232.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.574T>C
  hgvsp: ENSP00000248923.4:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.574T>C
  hgvsp: ENSP00000383233.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.574T>C
  hgvsp: ENSP00000393537.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.324T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.112T>C
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys192Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

22-25016491-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016491
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016491
    reference: chr 22
allele count: 1
allele frequency: 9.037832366285271e-6
allele num: 110646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.329T>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+4T>C
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15357
  bin: 2.25e1
  variant carriers: 0
hgvs: c.575+4T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

22-25016492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016492
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016492
    reference: chr 22
allele count: 1
allele frequency: 9.037995734066013e-6
allele num: 110644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.330G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+5G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
hgvs: c.575+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

22-25016496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016496
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016496
    reference: chr 22
allele count: 11
allele frequency: 1.022095854007545e-4
allele num: 107622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.334G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+9G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

22-25016496-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016496
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016496
    reference: chr 22
allele count: 1
allele frequency: 9.291780490977681e-6
allele num: 107622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.334G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+9G>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

22-25016498-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016498
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016498
    reference: chr 22
allele count: 2
allele frequency: 1.887789775730575e-5
allele num: 105944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+11G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.336G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+11G>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

22-25016503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016503
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016503
    reference: chr 22
allele count: 3
allele frequency: 3.163155563990637e-5
allele num: 94842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.341C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+16C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

22-25016503-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016503
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016502
    reference: chr 22
allele count: 3
allele frequency: 3.163155563990637e-5
allele num: 94842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+18delG
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.343delG
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19632
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CG
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

22-25016506-C-CCCCCTGACACAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016506
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016519
    reference: chr 22
allele count: 34
allele frequency: 4.632910012536109e-4
allele num: 73388
alternate allele: CCCCCTGACACAGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21120
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6957
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6674
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5230
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

22-25016510-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016510
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016510
    reference: chr 22
allele count: 1
allele frequency: 1.419849495953429e-5
allele num: 70430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.348C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+23C>G
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22551
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

22-25016520-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016520
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016520
    reference: chr 22
allele count: 2
allele frequency: 2.899475194989707e-5
allele num: 68978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.358C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+33C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20226
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

22-25016523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016523
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016523
    reference: chr 22
allele count: 43
allele frequency: 6.526226323457989e-4
allele num: 65888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.361G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+36G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20091
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19483
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5518
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

22-25016527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016527
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016527
    reference: chr 22
allele count: 1
allele frequency: 1.420333494304463e-5
allele num: 70406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.365G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+40G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

22-25016531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016531
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016531
    reference: chr 22
allele count: 1
allele frequency: 1.4024852037811e-5
allele num: 71302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.369C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+44C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18755
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

22-25016536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016536
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016536
    reference: chr 22
allele count: 2
allele frequency: 2.734706155823557e-5
allele num: 73134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000487766
  gene symbol: GGT1
  hgvsc: ENST00000487766.1:n.374C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.575+49C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16754
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26432
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

22-25016832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016832
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016832
    reference: chr 22
allele count: 1
allele frequency: 8.842358433841474e-6
allele num: 113092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+345G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-48G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12441
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/22-25016845-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016845
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016845
    reference: chr 22
allele count: 1
allele frequency: 8.811659587966797e-6
allele num: 113486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+358C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-35C>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

22-25016848-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016848
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016848
    reference: chr 22
allele count: 1
allele frequency: 8.796776860958145e-6
allele num: 113678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+361C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-32C>G
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

22-25016850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016850
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016850
    reference: chr 22
allele count: 357
allele frequency: 3.13802014661674e-3
allele num: 113766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+363G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-30G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14130
  bin: 2.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25634
  bin: 2.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 7
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/22-25016858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016858
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016858
    reference: chr 22
allele count: 4
allele frequency: 3.50594257266066e-5
allele num: 114092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+371A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-22A>C
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

22-25016860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016860
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016860
    reference: chr 22
allele count: 3
allele frequency: 2.627890679747722e-5
allele num: 114160
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+373A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-20A>G
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

22-25016867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016867
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016867
    reference: chr 22
allele count: 1
allele frequency: 8.737287247055534e-6
allele num: 114452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+380C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-13C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-25016869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016869
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016869
    reference: chr 22
allele count: 1
allele frequency: 8.728897889352491e-6
allele num: 114562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+382C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-11C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-25016869-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016869
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016868
    reference: chr 22
allele count: 1
allele frequency: 8.728897889352491e-6
allele num: 114562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+383delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.576-10delT
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: CT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

22-25016894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016894
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016894
    reference: chr 22
allele count: 2
allele frequency: 1.723187207058175e-5
allele num: 116064
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.590G>A
  hgvsp: ENSP00000383232.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.590G>A
  hgvsp: ENSP00000248923.4:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+407G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.590G>A
  hgvsp: ENSP00000383233.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.590G>A
  hgvsp: ENSP00000393537.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.590G>A
  hgvsp: ENSP00000385975.2:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.590G>A
  hgvsp: ENSP00000383231.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.590G>A
  hgvsp: ENSP00000387499.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18987
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg197Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-25016899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016899
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016899
    reference: chr 22
allele count: 1
allele frequency: 8.602150537634409e-6
allele num: 116250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.595A>G
  hgvsp: ENSP00000383231.1:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.595A>G
  hgvsp: ENSP00000393537.1:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+412A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.595A>G
  hgvsp: ENSP00000383232.1:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.595A>G
  hgvsp: ENSP00000385975.2:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.595A>G
  hgvsp: ENSP00000387499.1:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.595A>G
  hgvsp: ENSP00000248923.4:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.595A>G
  hgvsp: ENSP00000383233.1:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg199Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

22-25016902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016902
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016902
    reference: chr 22
allele count: 8
allele frequency: 6.882075634011217e-5
allele num: 116244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.598A>G
  hgvsp: ENSP00000387499.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.598A>G
  hgvsp: ENSP00000385975.2:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.598A>G
  hgvsp: ENSP00000393537.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.598A>G
  hgvsp: ENSP00000383233.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.598A>G
  hgvsp: ENSP00000383231.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+415A>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.598A>G
  hgvsp: ENSP00000383232.1:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.598A>G
  hgvsp: ENSP00000248923.4:p.Lys200Glu
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19177
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30386
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys200Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

22-25016904-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016904
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016904
    reference: chr 22
allele count: 1
allele frequency: 8.607629803057431e-6
allele num: 116176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.600G>C
  hgvsp: ENSP00000385975.2:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+417G>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.600G>C
  hgvsp: ENSP00000383231.1:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.600G>C
  hgvsp: ENSP00000393537.1:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.600G>C
  hgvsp: ENSP00000383232.1:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.600G>C
  hgvsp: ENSP00000383233.1:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.600G>C
  hgvsp: ENSP00000387499.1:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.600G>C
  hgvsp: ENSP00000248923.4:p.Lys200Asn
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys200Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

22-25016911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016911
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016911
    reference: chr 22
allele count: 15
allele frequency: 1.29939881148322e-4
allele num: 115438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.607C>T
  hgvsp: ENSP00000383231.1:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.607C>T
  hgvsp: ENSP00000393537.1:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.607C>T
  hgvsp: ENSP00000248923.4:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+424C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.607C>T
  hgvsp: ENSP00000383233.1:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.607C>T
  hgvsp: ENSP00000383232.1:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.607C>T
  hgvsp: ENSP00000387499.1:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.607C>T
  hgvsp: ENSP00000385975.2:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19306
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29394
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 2
hgvs: p.Arg203Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

22-25016912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016912
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016912
    reference: chr 22
allele count: 10
allele frequency: 8.607926178425093e-5
allele num: 116172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.608G>A
  hgvsp: ENSP00000393537.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.608G>A
  hgvsp: ENSP00000383233.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.608G>A
  hgvsp: ENSP00000383232.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+425G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.608G>A
  hgvsp: ENSP00000248923.4:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.608G>A
  hgvsp: ENSP00000383231.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.608G>A
  hgvsp: ENSP00000387499.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.608G>A
  hgvsp: ENSP00000385975.2:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29689
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19645
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44181
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg203Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-25016916-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016916
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016916
    reference: chr 22
allele count: 1
allele frequency: 8.590474881451447e-6
allele num: 116408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.612G>C
  hgvsp: ENSP00000387499.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.612G>C
  hgvsp: ENSP00000383231.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.612G>C
  hgvsp: ENSP00000248923.4:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.612G>C
  hgvsp: ENSP00000383233.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+429G>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.612G>C
  hgvsp: ENSP00000393537.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.612G>C
  hgvsp: ENSP00000383232.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.612G>C
  hgvsp: ENSP00000385975.2:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44664
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu204Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

22-25016916-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016916
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016916
    reference: chr 22
allele count: 1
allele frequency: 8.590474881451447e-6
allele num: 116408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.612G>T
  hgvsp: ENSP00000383231.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.612G>T
  hgvsp: ENSP00000383232.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.612G>T
  hgvsp: ENSP00000385975.2:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.612G>T
  hgvsp: ENSP00000383233.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.612G>T
  hgvsp: ENSP00000387499.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+429G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.612G>T
  hgvsp: ENSP00000393537.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.612G>T
  hgvsp: ENSP00000248923.4:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19813
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu204Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

22-25016918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016918
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016918
    reference: chr 22
allele count: 1
allele frequency: 8.592246356887545e-6
allele num: 116384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.614G>A
  hgvsp: ENSP00000383232.1:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.614G>A
  hgvsp: ENSP00000393537.1:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.614G>A
  hgvsp: ENSP00000383231.1:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.614G>A
  hgvsp: ENSP00000385975.2:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.614G>A
  hgvsp: ENSP00000248923.4:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.614G>A
  hgvsp: ENSP00000383233.1:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.614G>A
  hgvsp: ENSP00000387499.1:p.Gly205Glu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+431G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly205Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-25016920-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016920
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016920
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 116380
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.616G>C
  hgvsp: ENSP00000383232.1:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.616G>C
  hgvsp: ENSP00000393537.1:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+433G>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.616G>C
  hgvsp: ENSP00000385975.2:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.616G>C
  hgvsp: ENSP00000383233.1:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.616G>C
  hgvsp: ENSP00000248923.4:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.616G>C
  hgvsp: ENSP00000383231.1:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.616G>C
  hgvsp: ENSP00000387499.1:p.Glu206Gln
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu206Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/22-25016929-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016929
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016929
    reference: chr 22
allele count: 211
allele frequency: 1.885005717552887e-3
allele num: 111936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.625A>C
  hgvsp: ENSP00000383231.1:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.625A>C
  hgvsp: ENSP00000248923.4:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.625A>C
  hgvsp: ENSP00000387499.1:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.625A>C
  hgvsp: ENSP00000383233.1:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+442A>C
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.625A>C
  hgvsp: ENSP00000383232.1:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.625A>C
  hgvsp: ENSP00000393537.1:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.625A>C
  hgvsp: ENSP00000385975.2:p.Thr209Pro
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 28045
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 19812
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 14
hgvs: p.Thr209Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

22-25016930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016930
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016930
    reference: chr 22
allele count: 1
allele frequency: 8.599339570720968e-6
allele num: 116288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.626C>T
  hgvsp: ENSP00000387499.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.626C>T
  hgvsp: ENSP00000383233.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.626C>T
  hgvsp: ENSP00000393537.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+443C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.626C>T
  hgvsp: ENSP00000383232.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.626C>T
  hgvsp: ENSP00000385975.2:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.626C>T
  hgvsp: ENSP00000383231.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.626C>T
  hgvsp: ENSP00000248923.4:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr209Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-25016935-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016935
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016935
    reference: chr 22
allele count: 1
allele frequency: 8.64707815229234e-6
allele num: 115646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.631C>A
  hgvsp: ENSP00000383231.1:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.631C>A
  hgvsp: ENSP00000383233.1:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+448C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.631C>A
  hgvsp: ENSP00000385975.2:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.631C>A
  hgvsp: ENSP00000248923.4:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.631C>A
  hgvsp: ENSP00000393537.1:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.631C>A
  hgvsp: ENSP00000383232.1:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.631C>A
  hgvsp: ENSP00000387499.1:p.Pro211Thr
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro211Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

22-25016936-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016936
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016936
    reference: chr 22
allele count: 3
allele frequency: 2.594841455187088e-5
allele num: 115614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+449C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.632C>T
  hgvsp: ENSP00000383233.1:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.632C>T
  hgvsp: ENSP00000393537.1:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.632C>T
  hgvsp: ENSP00000387499.1:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.632C>T
  hgvsp: ENSP00000383231.1:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.632C>T
  hgvsp: ENSP00000383232.1:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.632C>T
  hgvsp: ENSP00000385975.2:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.632C>T
  hgvsp: ENSP00000248923.4:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5108
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro211Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

22-25016937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016937
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016937
    reference: chr 22
allele count: 5
allele frequency: 4.339901050256054e-5
allele num: 115210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+450G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.633G>A
  hgvsp: ENST00000400380.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.633G>A
  hgvsp: ENST00000412658.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.633G>A
  hgvsp: ENST00000248923.4:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.633G>A
  hgvsp: ENST00000406383.2:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.633G>A
  hgvsp: ENST00000400382.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.633G>A
  hgvsp: ENST00000425895.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.633G>A
  hgvsp: ENST00000400383.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21363
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 44840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro211Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

22-25016949-CACCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016949
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016945
    reference: chr 22
allele count: 2
allele frequency: 1.802158986465786e-5
allele num: 110978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.648_651delCTAC
  hgvsp: ENSP00000383233.1:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.648_651delCTAC
  hgvsp: ENSP00000383231.1:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.648_651delCTAC
  hgvsp: ENSP00000387499.1:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.648_651delCTAC
  hgvsp: ENSP00000248923.4:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.648_651delCTAC
  hgvsp: ENSP00000383232.1:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.648_651delCTAC
  hgvsp: ENSP00000393537.1:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.648_651delCTAC
  hgvsp: ENSP00000385975.2:p.Tyr217ArgfsTer21
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+465_113+468delCTAC
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7874
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40408
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr217ArgfsTer21
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: CACCT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

22-25016955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016955
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016955
    reference: chr 22
allele count: 4
allele frequency: 3.704321090552129e-5
allele num: 107982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.651C>T
  hgvsp: ENST00000248923.4:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.651C>T
  hgvsp: ENST00000400382.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+468C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.651C>T
  hgvsp: ENST00000400380.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.651C>T
  hgvsp: ENST00000406383.2:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.651C>T
  hgvsp: ENST00000412658.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.651C>T
  hgvsp: ENST00000425895.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.651C>T
  hgvsp: ENST00000400383.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr217Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-25016956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016956
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016956
    reference: chr 22
allele count: 2
allele frequency: 1.859185304999349e-5
allele num: 107574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.652G>A
  hgvsp: ENSP00000385975.2:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+469G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.652G>A
  hgvsp: ENSP00000383231.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.652G>A
  hgvsp: ENSP00000248923.4:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.652G>A
  hgvsp: ENSP00000383232.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.652G>A
  hgvsp: ENSP00000387499.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.652G>A
  hgvsp: ENSP00000383233.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.652G>A
  hgvsp: ENSP00000393537.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22495
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu218Lys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

22-25016960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016960
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016960
    reference: chr 22
allele count: 15
allele frequency: 1.462900834828743e-4
allele num: 102536
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.656C>T
  hgvsp: ENSP00000383232.1:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.656C>T
  hgvsp: ENSP00000387499.1:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.656C>T
  hgvsp: ENSP00000248923.4:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.656C>T
  hgvsp: ENSP00000393537.1:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.656C>T
  hgvsp: ENSP00000385975.2:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.656C>T
  hgvsp: ENSP00000383231.1:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+473C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.656C>T
  hgvsp: ENSP00000383233.1:p.Thr219Met
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr219Met
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

22-25016961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016961
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016961
    reference: chr 22
allele count: 1
allele frequency: 9.767914354926936e-6
allele num: 102376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.657G>A
  hgvsp: ENST00000400382.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.657G>A
  hgvsp: ENST00000412658.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.657G>A
  hgvsp: ENST00000425895.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.657G>A
  hgvsp: ENST00000406383.2:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.657G>A
  hgvsp: ENST00000400383.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.657G>A
  hgvsp: ENST00000400380.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.657G>A
  hgvsp: ENST00000248923.4:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+474G>A
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14694
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr219Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

22-25016961-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016961
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016961
    reference: chr 22
allele count: 1
allele frequency: 9.767914354926936e-6
allele num: 102376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.657G>T
  hgvsp: ENST00000425895.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.657G>T
  hgvsp: ENST00000400383.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.657G>T
  hgvsp: ENST00000400380.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.657G>T
  hgvsp: ENST00000400382.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.657G>T
  hgvsp: ENST00000248923.4:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+474G>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.657G>T
  hgvsp: ENST00000406383.2:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.657G>T
  hgvsp: ENST00000412658.1:c.657G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr219Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-25016967-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016967
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016967
    reference: chr 22
allele count: 1
allele frequency: 1.021909744931328e-5
allele num: 97856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.663C>G
  hgvsp: ENST00000425895.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.663C>G
  hgvsp: ENST00000400383.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.663C>G
  hgvsp: ENST00000412658.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+480C>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.663C>G
  hgvsp: ENST00000400380.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.663C>G
  hgvsp: ENST00000400382.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.663C>G
  hgvsp: ENST00000406383.2:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.663C>G
  hgvsp: ENST00000248923.4:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala221Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

22-25016976-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016976
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016976
    reference: chr 22
allele count: 1
allele frequency: 1.111654586686825e-5
allele num: 89956
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.672T>G
  hgvsp: ENST00000400382.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+489T>G
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.672T>G
  hgvsp: ENST00000425895.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.672T>G
  hgvsp: ENST00000412658.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.672T>G
  hgvsp: ENST00000248923.4:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.672T>G
  hgvsp: ENST00000400380.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.672T>G
  hgvsp: ENST00000400383.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.672T>G
  hgvsp: ENST00000406383.2:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly224Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

22-25016994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016994
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016994
    reference: chr 22
allele count: 2
allele frequency: 2.752546105147261e-5
allele num: 72660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.690C>T
  hgvsp: ENST00000425895.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.690C>T
  hgvsp: ENST00000406383.2:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.690C>T
  hgvsp: ENST00000248923.4:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.690C>T
  hgvsp: ENST00000400380.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.690C>T
  hgvsp: ENST00000400383.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+507C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.690C>T
  hgvsp: ENST00000412658.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.690C>T
  hgvsp: ENST00000400382.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn230Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

22-25016997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25016997
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25016997
    reference: chr 22
allele count: 1
allele frequency: 1.466232661798774e-5
allele num: 68202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.693C>T
  hgvsp: ENST00000248923.4:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.693C>T
  hgvsp: ENST00000425895.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.693C>T
  hgvsp: ENST00000406383.2:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.693C>T
  hgvsp: ENST00000400380.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.693C>T
  hgvsp: ENST00000412658.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.693C>T
  hgvsp: ENST00000400383.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.693C>T
  hgvsp: ENST00000400382.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+510C>T
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly231Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

22-25017003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25017003
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25017003
    reference: chr 22
allele count: 2
allele frequency: 3.146534092696895e-5
allele num: 63562
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.699C>T
  hgvsp: ENST00000400382.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.699C>T
  hgvsp: ENST00000412658.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+516C>T
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.699C>T
  hgvsp: ENST00000400383.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.699C>T
  hgvsp: ENST00000425895.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.699C>T
  hgvsp: ENST00000406383.2:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.699C>T
  hgvsp: ENST00000248923.4:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.699C>T
  hgvsp: ENST00000400380.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu233Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/22-25017005-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25017005
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25017005
    reference: chr 22
allele count: 4
allele frequency: 6.461200491051237e-5
allele num: 61908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.701C>A
  hgvsp: ENSP00000393537.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.701C>A
  hgvsp: ENSP00000387499.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.701C>A
  hgvsp: ENSP00000383231.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.701C>A
  hgvsp: ENSP00000248923.4:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.701C>A
  hgvsp: ENSP00000385975.2:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+518C>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.701C>A
  hgvsp: ENSP00000383232.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.701C>A
  hgvsp: ENSP00000383233.1:p.Thr234Lys
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4938
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr234Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

22-25017006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25017006
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25017006
    reference: chr 22
allele count: 168
allele frequency: 2.779984114376489e-3
allele num: 60432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+519G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.702G>A
  hgvsp: ENST00000400382.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.702G>A
  hgvsp: ENST00000400380.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.702G>A
  hgvsp: ENST00000406383.2:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.702G>A
  hgvsp: ENST00000248923.4:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.702G>A
  hgvsp: ENST00000400383.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.702G>A
  hgvsp: ENST00000412658.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.702G>A
  hgvsp: ENST00000425895.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24616
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17208
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35596
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5383
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 9.75e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Thr234Thr
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

22-25017012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25017012
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 25017012
    reference: chr 22
allele count: 1
allele frequency: 1.78699070764832e-5
allele num: 55960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383233
  ensembl transcript: ENST00000400383
  gene symbol: GGT1
  hgvsc: ENST00000400383.1:c.708G>A
  hgvsp: ENST00000400383.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000248923
  ensembl transcript: ENST00000248923
  gene symbol: GGT1
  hgvsc: ENST00000248923.4:c.708G>A
  hgvsp: ENST00000248923.4:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100031
  ensembl transcript: ENST00000466310
  gene symbol: GGT1
  hgvsc: ENST00000466310.1:n.113+525G>A
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383232
  ensembl transcript: ENST00000400382
  gene symbol: GGT1
  hgvsc: ENST00000400382.1:c.708G>A
  hgvsp: ENST00000400382.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000385975
  ensembl transcript: ENST00000406383
  gene symbol: GGT1
  hgvsc: ENST00000406383.2:c.708G>A
  hgvsp: ENST00000406383.2:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000393537
  ensembl transcript: ENST00000412658
  gene symbol: GGT1
  hgvsc: ENST00000412658.1:c.708G>A
  hgvsp: ENST00000412658.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000383231
  ensembl transcript: ENST00000400380
  gene symbol: GGT1
  hgvsc: ENST00000400380.1:c.708G>A
  hgvsp: ENST00000400380.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100031
  ensembl protein: ENSP00000387499
  ensembl transcript: ENST00000425895
  gene symbol: GGT1
  hgvsc: ENST00000425895.1:c.708G>A
  hgvsp: ENST00000425895.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4250
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln236Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

GenotypeQuality
all individuals: 514
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 871
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.050197405527355e-5
allele num: 14184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.377e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

QD
type: SiteQuality
SIO_000300: 9.34e0

VQSLOD
type: SiteQuality
SIO_000300: -3.348e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 3.637e1

DP
type: SiteQuality
SIO_000300: 1.172519e6

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2846
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.785714285714286e-4
allele num: 11200
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.447980416156671e-4
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 5.112305814835581e-4
allele num: 60638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 8.756567425569177e-4
allele num: 5710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.449731e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.247e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

MQ
type: SiteQuality
SIO_000300: 3.764e1

QD
type: SiteQuality
SIO_000300: 1.006e1

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.24285359184688e-4
allele num: 8046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

MQRankSum
type: SiteQuality
SIO_000300: -2.003e0

MQ
type: SiteQuality
SIO_000300: 4.12e1

VQSLOD
type: SiteQuality
SIO_000300: -2.952e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 4.02e0

DP
type: SiteQuality
SIO_000300: 1.457319e6

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63526949241235e-5
allele num: 61152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.461463e6

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e0

FS
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 3.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.143e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.391205700955485e-5
allele num: 62586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.623e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 9.93e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.928e0

DP
type: SiteQuality
SIO_000300: 1.489633e6

MQ
type: SiteQuality
SIO_000300: 3.822e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
all individuals: 47681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.753155680224404e-4
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594591146829953e-5
allele num: 62712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.491252e6

VQSLOD
type: SiteQuality
SIO_000300: -4.686e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 2.876e0

MQ
type: SiteQuality
SIO_000300: 3.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.11e-1

QD
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5078
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62856
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.03e0

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQ
type: SiteQuality
SIO_000300: 3.725e1

DP
type: SiteQuality
SIO_000300: 1.493137e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.828e0

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 24

GenotypeQuality
all individuals: 620
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 1840
bin: 2.25e1
variant carriers: 23

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 28

GenotypeQuality
all individuals: 4867
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 46706
bin: 6.25e1
variant carriers: 21

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 834
bin: 7.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1337
bin: 9.75e1
variant carriers: 221

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 12

Latino
type: Population
allele count: 27
allele frequency: 2.380952380952381e-3
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.980861244019139e-3
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 290
allele frequency: 4.652953823444469e-3
allele num: 62326
num of homozygotes: 0

South Asian
type: Population
allele count: 74
allele frequency: 4.591140339992555e-3
allele num: 16118
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 9.865255052935515e-3
allele num: 8312
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.178689297501179e-3
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.871536523929471e-4
allele num: 6352
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.556694e6

MQRankSum
type: SiteQuality
SIO_000300: -2.918e0

QD
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -2.494e1

FS
type: SiteQuality
SIO_000300: 7.131399999999999e1

MQ
type: SiteQuality
SIO_000300: 4.307e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1466
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47523
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.167263167896621e-5
allele num: 63146
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 3.8e1

DP
type: SiteQuality
SIO_000300: 1.500833e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 9.856999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -3.646e0

GenotypeQuality
all individuals: 1993
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.750443374714973e-5
allele num: 63152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 1.50061e6

QD
type: SiteQuality
SIO_000300: 1.641e1

VQSLOD
type: SiteQuality
SIO_000300: -3.479e0

FS
type: SiteQuality
SIO_000300: 1.0338e1

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 3.743e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583380834758376e-5
allele num: 63156
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.528581510232887e-4
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.744316194473592e-5
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.559e0

FS
type: SiteQuality
SIO_000300: 5.078e0

DP
type: SiteQuality
SIO_000300: 1.498983e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.997e0

MQ
type: SiteQuality
SIO_000300: 3.564e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2053
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5162
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1431
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47347
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.584987003106574e-4
allele num: 63092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498381e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQ
type: SiteQuality
SIO_000300: 4.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.758e0

VQSLOD
type: SiteQuality
SIO_000300: -5.326e0

FS
type: SiteQuality
SIO_000300: 2.2505e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 989
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 5155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.744481096168485e-4
allele num: 63056
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.885053443140004e-4
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.997e0

MQRankSum
type: SiteQuality
SIO_000300: -1.662e0

QD
type: SiteQuality
SIO_000300: 4.97e0

DP
type: SiteQuality
SIO_000300: 1.498213e6

MQ
type: SiteQuality
SIO_000300: 4.185e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 2.795e0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.168668208751862e-5
allele num: 63118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.142e0

MQ
type: SiteQuality
SIO_000300: 3.546e1

DP
type: SiteQuality
SIO_000300: 1.494241e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 1396
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5134
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585087496829825e-5
allele num: 63088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 3.535e1

VQSLOD
type: SiteQuality
SIO_000300: -3.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 2.351e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

DP
type: SiteQuality
SIO_000300: 1.493547e6

GenotypeQuality
all individuals: 2193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.171079752655779e-5
allele num: 63070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 6.48e-1

QD
type: SiteQuality
SIO_000300: 7.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 3.256e1

VQSLOD
type: SiteQuality
SIO_000300: -4.47e0

DP
type: SiteQuality
SIO_000300: 1.49352e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
all individuals: 802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216397031991242e-4
allele num: 16442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -3.796e0

MQ
type: SiteQuality
SIO_000300: 3.329e1

FS
type: SiteQuality
SIO_000300: 4.782e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.031e1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 1.469446e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 3.752e1

FS
type: SiteQuality
SIO_000300: 4.863e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.289e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

DP
type: SiteQuality
SIO_000300: 1.443776e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 1.608e1

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.254691018263698e-5
allele num: 15988
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

QD
type: SiteQuality
SIO_000300: 1.27e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.322725e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.98e-1

MQ
type: SiteQuality
SIO_000300: 3.218e1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 1.186e0

VQSLOD
type: SiteQuality
SIO_000300: -4.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.986340762041697e-5
allele num: 11128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 3.583e1

FS
type: SiteQuality
SIO_000300: 6.251e0

VQSLOD
type: SiteQuality
SIO_000300: -5.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 1.322493e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.673e0

MQRankSum
type: SiteQuality
SIO_000300: -1.344e0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.861063174635401e-4
allele num: 59106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.47e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.525e0

MQRankSum
type: SiteQuality
SIO_000300: -1.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

MQ
type: SiteQuality
SIO_000300: 3.467e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

DP
type: SiteQuality
SIO_000300: 1.229459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

GenotypeQuality
all individuals: 3455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.69187561330491e-5
allele num: 59106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

FS
type: SiteQuality
SIO_000300: 5.47e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.525e0

MQ
type: SiteQuality
SIO_000300: 3.467e1

DP
type: SiteQuality
SIO_000300: 1.229459e6

GenotypeQuality
all individuals: 5208
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.429237680463633e-5
allele num: 58322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

VQSLOD
type: SiteQuality
SIO_000300: -3.637e0

DP
type: SiteQuality
SIO_000300: 1.181226e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 3.451e1

QD
type: SiteQuality
SIO_000300: 1.039e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.693247808099594e-5
allele num: 52694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 2.219e0

DP
type: SiteQuality
SIO_000300: 1.011588e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

QD
type: SiteQuality
SIO_000300: 7.77e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 3.601e1

GenotypeQuality
all individuals: 1381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.101281781886951e-4
allele num: 9518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.897749269366531e-5
allele num: 52694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.77e0

MQ
type: SiteQuality
SIO_000300: 3.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.011588e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

FS
type: SiteQuality
SIO_000300: 2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 9.75e1
variant carriers: 87

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3220
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 3.21011673151751e-3
allele num: 10280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.979414093428345e-4
allele num: 5052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42214
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 3.532e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

DP
type: SiteQuality
SIO_000300: 8.84903e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

FS
type: SiteQuality
SIO_000300: 6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.381e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 5075
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5833
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.462932860450224e-5
allele num: 40602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.357e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 3.781e1

DP
type: SiteQuality
SIO_000300: 8.10048e5

GenotypeQuality
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.27715996578272e-4
allele num: 4676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.31e0

DP
type: SiteQuality
SIO_000300: 7.70879e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

QD
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 3.602e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 632
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1372
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 5719
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1691
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 155
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 450
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4910
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26499
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2648
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.0e-3
allele num: 3000
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.655493482309125e-4
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 8.37301794965723e-4
allele num: 38218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.356831151393085e-4
allele num: 5958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.988831272437176e-4
allele num: 5014
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

FS
type: SiteQuality
SIO_000300: 3.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

VQSLOD
type: SiteQuality
SIO_000300: -3.55e0

DP
type: SiteQuality
SIO_000300: 7.86575e5

MQ
type: SiteQuality
SIO_000300: 3.589e1

QD
type: SiteQuality
SIO_000300: 9.9e-1

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27740
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.585288522511097e-4
allele num: 6308
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.154e0

MQRankSum
type: SiteQuality
SIO_000300: -2.153e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.779e1

DP
type: SiteQuality
SIO_000300: 8.05891e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeQuality
all individuals: 8893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3400
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.91131498470948e-4
allele num: 5232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.3055e5

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.399e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

VQSLOD
type: SiteQuality
SIO_000300: -3.127e0

MQ
type: SiteQuality
SIO_000300: 3.75e1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3940
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12235
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.728132387706856e-5
allele num: 42300
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 9.66e0

DP
type: SiteQuality
SIO_000300: 8.69056e5

VQSLOD
type: SiteQuality
SIO_000300: -4.537e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.315e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 3929
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.053050878145935e-5
allele num: 11046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62806
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.674e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

QD
type: SiteQuality
SIO_000300: 1.545e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.843e1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.373754e6

VQSLOD
type: SiteQuality
SIO_000300: -1.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 3397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 932
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.639224538573895e-5
allele num: 15062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.479e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 4.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 1.418361e6

GenotypeQuality
all individuals: 1059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.045e0

MQ
type: SiteQuality
SIO_000300: 4.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

DP
type: SiteQuality
SIO_000300: 1.429491e6

FS
type: SiteQuality
SIO_000300: 1.0172e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -3.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
all individuals: 916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 571
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1936
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33230
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2723
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2532
bin: 9.75e1
variant carriers: 335

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1212
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585590156656307e-5
allele num: 63068
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.355712603062426e-4
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.629629629629629e-3
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 350
allele frequency: 2.308402585410896e-2
allele num: 15162
num of homozygotes: 7

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 4.683e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.649e0

DP
type: SiteQuality
SIO_000300: 1.439085e6

VQSLOD
type: SiteQuality
SIO_000300: -6.456e-1

GenotypeQuality
all individuals: 460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 642
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.331317863813352e-5
allele num: 63178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.269e0

DP
type: SiteQuality
SIO_000300: 1.4645e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.998e0

QD
type: SiteQuality
SIO_000300: 7.01e0

MQ
type: SiteQuality
SIO_000300: 4.228e1

GenotypeQuality
all individuals: 1532
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.97021887334051e-5
allele num: 11148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.152604887044721e-4
allele num: 8676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.484243288808196e-5
allele num: 15422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.445e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 4.235e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.470703e6

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 634
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39004
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4740
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580977676595206e-5
allele num: 63252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 4.596e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.496195e6

QD
type: SiteQuality
SIO_000300: 1.548e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.814e0

GenotypeQuality
all individuals: 3224
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579778830963665e-5
allele num: 63300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

DP
type: SiteQuality
SIO_000300: 1.504961e6

MQ
type: SiteQuality
SIO_000300: 4.352e1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeQuality
all individuals: 3224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 717
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63300
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.928571428571429e-5
allele num: 11200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.078e1

MQ
type: SiteQuality
SIO_000300: 4.352e1

FS
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 1.504961e6

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.138952164009112e-4
allele num: 8780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564064064064064e-5
allele num: 63936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.898e-1

MQ
type: SiteQuality
SIO_000300: 5.199e1

FS
type: SiteQuality
SIO_000300: 2.658e0

DP
type: SiteQuality
SIO_000300: 1.558067e6

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.65e-1

GenotypeQuality
all individuals: 538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561865492143817e-5
allele num: 64026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.157e0

VQSLOD
type: SiteQuality
SIO_000300: -1.553e0

MQ
type: SiteQuality
SIO_000300: 4.704e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.241e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 1.561431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2213
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.557632398753894e-4
allele num: 6420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.093408309903155e-4
allele num: 64020
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.41e1

QD
type: SiteQuality
SIO_000300: 1.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.104e0

DP
type: SiteQuality
SIO_000300: 1.561805e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.858e-1

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63970
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16294835449279e-5
allele num: 16226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 4.629e1

MQRankSum
type: SiteQuality
SIO_000300: -1.284e0

DP
type: SiteQuality
SIO_000300: 1.561457e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.137e0

GenotypeQuality
all individuals: 2148
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 596
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1099
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5103
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 3
allele frequency: 2.666666666666667e-4
allele num: 11250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.289901534234028e-4
allele num: 8734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.573762236001385e-4
allele num: 63542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.803e1

MQRankSum
type: SiteQuality
SIO_000300: -3.234e0

FS
type: SiteQuality
SIO_000300: 2.0216e1

VQSLOD
type: SiteQuality
SIO_000300: -6.784e0

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.57096e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64002
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.16370808678501e-4
allele num: 16224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.566943e6

MQ
type: SiteQuality
SIO_000300: 5.028e1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.85112409275978e-5
allele num: 11298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64154
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 4.64e0

MQ
type: SiteQuality
SIO_000300: 4.589e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.570088e6

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44664
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64154
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.85112409275978e-5
allele num: 11298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.589e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 4.64e0

DP
type: SiteQuality
SIO_000300: 1.570088e6

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165228113440197e-5
allele num: 16220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.278e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

FS
type: SiteQuality
SIO_000300: 4.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.423e1

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.569102e6

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.937e0

DP
type: SiteQuality
SIO_000300: 1.569372e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.501e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 4.786e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 7.96e0

GenotypeQuality
all individuals: 1376
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 798
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 41086
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2023
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 650
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4450
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1180
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2909
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 787
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1103
bin: 5.25e1
variant carriers: 17

GenotypeQuality
all individuals: 568
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 11

African
type: Population
allele count: 24
allele frequency: 2.846975088967972e-3
allele num: 8430
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.450980392156863e-3
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.318628626228722e-3
allele num: 8342
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.420054200542005e-4
allele num: 11070
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.486943546381497e-4
allele num: 16084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 56
allele frequency: 1.007919366450684e-2
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 1.752165871702521e-3
allele num: 61638
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.570384e6

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.343e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.937e0

FS
type: SiteQuality
SIO_000300: 2.26383e2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.93e-1

MQ
type: SiteQuality
SIO_000300: 4.834e1

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

DP
type: SiteQuality
SIO_000300: 1.572426e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.074e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 4.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 1991
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56563126252505e-5
allele num: 63872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 1.666e0

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

MQ
type: SiteQuality
SIO_000300: 5.157e1

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

DP
type: SiteQuality
SIO_000300: 1.564953e6

QD
type: SiteQuality
SIO_000300: 6.5e0

GenotypeQuality
all individuals: 45467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.122334455667789e-4
allele num: 8910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177024482109228e-4
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.92379082634303e-5
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16040
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.016e1

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 1.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.565458e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.715350036151017e-5
allele num: 63622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.256826901376664e-4
allele num: 8862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

FS
type: SiteQuality
SIO_000300: 4.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.121e1

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

DP
type: SiteQuality
SIO_000300: 1.560644e6

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.262855651265988e-5
allele num: 61296
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.422e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 6.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQ
type: SiteQuality
SIO_000300: 4.957e1

FS
type: SiteQuality
SIO_000300: 1.178e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.495837e6

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.358860674459224e-5
allele num: 59544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.543646119617851e-5
allele num: 15282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.238236750866766e-4
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.827e1

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

FS
type: SiteQuality
SIO_000300: 2.635e0

DP
type: SiteQuality
SIO_000300: 1.451758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e0

QD
type: SiteQuality
SIO_000300: 1.076e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37180
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685942610513538e-5
allele num: 59314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQ
type: SiteQuality
SIO_000300: 5.77e1

QD
type: SiteQuality
SIO_000300: 1.328e1

FS
type: SiteQuality
SIO_000300: 1.238e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.444063e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1554
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.75949709341625e-5
allele num: 14794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.697127937336815e-3
allele num: 7660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.773804455796793e-5
allele num: 56376
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.123e0

VQSLOD
type: SiteQuality
SIO_000300: -2.781e0

FS
type: SiteQuality
SIO_000300: 1.302e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 4.926e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.367146e6

QD
type: SiteQuality
SIO_000300: 5.14e0

GenotypeQuality
all individuals: 412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.776514478593e-5
allele num: 56290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.223e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 1.365613e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

MQ
type: SiteQuality
SIO_000300: 5.223e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.365613e6

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

QD
type: SiteQuality
SIO_000300: 8.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

GenotypeQuality
all individuals: 1096
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.86490619521838e-5
allele num: 53622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 4.964e1

DP
type: SiteQuality
SIO_000300: 1.292584e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

GenotypeQuality
all individuals: 2063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.225433526011561e-5
allele num: 13840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

FS
type: SiteQuality
SIO_000300: 2.312e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.171643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.597e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.909125620465827e-4
allele num: 5238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.586117720078618e-5
allele num: 38668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.455e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 9.59124e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

VQSLOD
type: SiteQuality
SIO_000300: -1.811e-1

GenotypeQuality
all individuals: 3464
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.776389582986285e-5
allele num: 36018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.765e1

FS
type: SiteQuality
SIO_000300: 5.297e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 9.19066e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.64e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.129e0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.027000964320154e-5
allele num: 33184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.436e1

DP
type: SiteQuality
SIO_000300: 8.82786e5

FS
type: SiteQuality
SIO_000300: 4.61e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.142e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
all individuals: 365
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 35906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1788
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.240694789081886e-4
allele num: 32240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.628e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 8.72787e5

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 7.11e0

MQ
type: SiteQuality
SIO_000300: 5.062e1

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 753
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 785
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7802
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2046
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 141
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 156
allele frequency: 3.263598326359832e-2
allele num: 4780
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.27429117553361e-4
allele num: 31390
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.394978078915903e-3
allele num: 5018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

MQ
type: SiteQuality
SIO_000300: 5.353e1

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 8.63263e5

GenotypeQuality
all individuals: 842
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.608242044861763e-4
allele num: 3834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.963e0