X-22208532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208532
    reference: chr 0
allele count: 1
allele frequency: 1.139899916787306e-5
allele num: 87727
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1296-29C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1587-29C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1587-29C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.696-29C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

X-22208539-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208539
    reference: chr 0
allele count: 2
allele frequency: 2.279851809632374e-5
allele num: 87725
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.696-22G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1296-22G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1587-22G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1587-22G>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3662
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3238
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11782
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-22208545-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208545
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208545
    reference: chr 0
allele count: 2
allele frequency: 2.279799833574612e-5
allele num: 87727
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1587-16G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.696-16G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1296-16G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1587-16G>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-22208569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208569
    reference: chr 0
allele count: 1
allele frequency: 1.139834951898965e-5
allele num: 87732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1595C>T
  hgvsp: ENSP00000440362.1:p.Thr532Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1304C>T
  hgvsp: ENSP00000439418.1:p.Thr435Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1595C>T
  hgvsp: ENSP00000368682.4:p.Thr532Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.704C>T
  hgvsp: ENSP00000443531.1:p.Thr235Ile
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3791
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2303
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31878
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr532Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-22208600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208600
    reference: chr 0
allele count: 2
allele frequency: 2.279981760145919e-5
allele num: 87720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1335T>C
  hgvsp: ENST00000535894.1:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.735T>C
  hgvsp: ENST00000418858.3:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1626T>C
  hgvsp: ENST00000379374.4:c.1626T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1626T>C
  hgvsp: ENST00000537599.1:c.1626T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser542Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-22208627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208627
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208627
    reference: chr 0
allele count: 14
allele frequency: 1.596678907871627e-4
allele num: 87682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+8C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+8C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+8C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+8C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31863
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1645+8C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-22208628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208628
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208628
    reference: chr 0
allele count: 1
allele frequency: 1.140575990875392e-5
allele num: 87675
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+9G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+9G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+9G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+9G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5026
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-22208638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208638
    reference: chr 0
allele count: 1
allele frequency: 1.141148680261551e-5
allele num: 87631
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+19T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+19T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+19T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+19T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1373
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-22208644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208644
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208644
    reference: chr 0
allele count: 1
allele frequency: 1.142060963214216e-5
allele num: 87561
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+25T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-22208657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208657
    reference: chr 0
allele count: 1
allele frequency: 1.143092293271759e-5
allele num: 87482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+38T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-22208659-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022208659
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022208659
    reference: chr 0
allele count: 1
allele frequency: 1.143628275065473e-5
allele num: 87441
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1354+40A>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1645+40A>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1645+40A>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.754+40A>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
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X-22230972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022230972
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022230972
    reference: chr 0
allele count: 1
allele frequency: 1.147354773569536e-5
allele num: 87157
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-49T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-49T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-49T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-49T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-22230975-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022230975
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022230975
    reference: chr 0
allele count: 25994
allele frequency: 2.991392008838151e-1
allele num: 86896
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-46T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-46T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-46T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-46T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1606
genotype depth: GenotypeDepth
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  variant carriers: 1179
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1819
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 1540
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 966
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 1063
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1258
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1260
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1221
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 80
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 8.75e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 6.25e1
  variant carriers: 190
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 293
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 9.25e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 102
num of homozygotes: 2668
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-22230993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022230993
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022230993
    reference: chr 0
allele count: 1
allele frequency: 1.146197489827497e-5
allele num: 87245
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-28A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-28A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-28A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-28A>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-22230996-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022230996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022230996
    reference: chr 0
allele count: 7
allele frequency: 8.022922636103152e-5
allele num: 87250
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-25T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-25T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34137
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-22230997-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022230997
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022230997
    reference: chr 0
allele count: 1
allele frequency: 1.145987325380181e-5
allele num: 87261
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-24C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-24C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-24C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-24C>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4075
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genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-22231011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231011
    reference: chr 0
allele count: 2
allele frequency: 2.290189971258116e-5
allele num: 87329
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-10C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

X-22231018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231018
    reference: chr 0
allele count: 1
allele frequency: 1.144243311897842e-5
allele num: 87394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1646-3T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1355-3T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.755-3T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1646-3T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
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hgvs: c.1646-3T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-22231030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231030
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231030
    reference: chr 0
allele count: 3
allele frequency: 3.429355281207133e-5
allele num: 87480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1655C>T
  hgvsp: ENSP00000440362.1:p.Ala552Val
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.764C>T
  hgvsp: ENSP00000443531.1:p.Ala255Val
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1364C>T
  hgvsp: ENSP00000439418.1:p.Ala455Val
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1655C>T
  hgvsp: ENSP00000368682.4:p.Ala552Val
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala552Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-22231050-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231050
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231050
    reference: chr 0
allele count: 4
allele frequency: 4.566157920571683e-5
allele num: 87601
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.784T>C
  hgvsp: ENSP00000443531.1:p.Phe262Leu
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1675T>C
  hgvsp: ENSP00000440362.1:p.Phe559Leu
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1384T>C
  hgvsp: ENSP00000439418.1:p.Phe462Leu
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1675T>C
  hgvsp: ENSP00000368682.4:p.Phe559Leu
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Phe559Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-22231055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231055
    reference: chr 0
allele count: 1
allele frequency: 1.141370100668843e-5
allele num: 87614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.789T>C
  hgvsp: ENST00000418858.3:c.789T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1389T>C
  hgvsp: ENST00000535894.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1680T>C
  hgvsp: ENST00000379374.4:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1680T>C
  hgvsp: ENST00000537599.1:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34134
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe560Phe
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-22231074-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231074
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231074
    reference: chr 0
allele count: 1
allele frequency: 1.141135658207048e-5
allele num: 87632
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1699C>A
  hgvsp: ENST00000537599.1:c.1699C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1699C>A
  hgvsp: ENST00000379374.4:c.1699C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1408C>A
  hgvsp: ENST00000535894.1:c.1408C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.808C>A
  hgvsp: ENST00000418858.3:c.808C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4436
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4097
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1699C>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-22231075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231075
    reference: chr 0
allele count: 1
allele frequency: 1.141265892127548e-5
allele num: 87622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1700G>A
  hgvsp: ENSP00000440362.1:p.Arg567Gln
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.809G>A
  hgvsp: ENSP00000443531.1:p.Arg270Gln
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1700G>A
  hgvsp: ENSP00000368682.4:p.Arg567Gln
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409G>A
  hgvsp: ENSP00000439418.1:p.Arg470Gln
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3291
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3076
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9524
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  variant carriers: 0
hgvs: p.Arg567Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

X-22231098-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231098
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231097
    reference: chr 0
allele count: 2
allele frequency: 2.283235344483133e-5
allele num: 87595
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409+24delA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1700+24delA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.809+24delA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1700+24delA
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1331
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: CA
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-22231109-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231109
    reference: chr 0
allele count: 1
allele frequency: 1.142204454597373e-5
allele num: 87550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1700+34C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409+34C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.809+34C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1700+34C>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-22231109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231109
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409+34C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1700+34C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
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  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
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  gene symbol: PHEX
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  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
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X-22231113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231113
    reference: chr 0
allele count: 4
allele frequency: 4.569026568889498e-5
allele num: 87546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.809+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1700+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409+38T>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
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  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
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  hgvsc: ENST00000537599.1:c.1700+38T>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
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X-22231125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022231125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022231125
    reference: chr 0
allele count: 50
allele frequency: 5.716768425144634e-4
allele num: 87462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.809+50G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1700+50G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1700+50G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1409+50G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
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site quality: VQSLOD
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X-22237127-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237127
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237127
    reference: chr 0
allele count: 1
allele frequency: 1.149848220034955e-5
allele num: 86968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1701-26C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1701-26C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1410-26C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.810-26C>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

X-22237127-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237127
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237127
    reference: chr 0
allele count: 2
allele frequency: 2.299696440069911e-5
allele num: 86968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.810-26C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1701-26C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1701-26C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1410-26C>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

X-22237138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237138
    reference: chr 0
allele count: 1
allele frequency: 1.146499736305061e-5
allele num: 87222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.810-15G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1701-15G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1410-15G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1701-15G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-22237148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237148
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237148
    reference: chr 0
allele count: 1
allele frequency: 1.144282592028927e-5
allele num: 87391
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.810-5C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1701-5C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1410-5C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1701-5C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.1701-5C>T
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
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site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

X-22237154-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237154
    reference: chr 0
allele count: 1
allele frequency: 1.143353685028927e-5
allele num: 87462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.811T>A
  hgvsp: ENSP00000443531.1:p.Ser271Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1411T>A
  hgvsp: ENSP00000439418.1:p.Ser471Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1702T>A
  hgvsp: ENSP00000368682.4:p.Ser568Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1702T>A
  hgvsp: ENSP00000440362.1:p.Ser568Thr
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser568Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-22237174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237174
    reference: chr 0
allele count: 1
allele frequency: 1.142178362573099e-5
allele num: 87552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1431A>G
  hgvsp: ENSP00000439418.1:p.Ile477Met
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.831A>G
  hgvsp: ENSP00000443531.1:p.Ile277Met
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1722A>G
  hgvsp: ENSP00000440362.1:p.Ile574Met
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1722A>G
  hgvsp: ENSP00000368682.4:p.Ile574Met
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1985
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile574Met
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-22237178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237178
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237178
    reference: chr 0
allele count: 1
allele frequency: 1.142060963214216e-5
allele num: 87561
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1435G>A
  hgvsp: ENSP00000439418.1:p.Val479Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.835G>A
  hgvsp: ENSP00000443531.1:p.Val279Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1726G>A
  hgvsp: ENSP00000368682.4:p.Val576Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1726G>A
  hgvsp: ENSP00000440362.1:p.Val576Ile
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
hgvs: p.Val576Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

X-22237186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237186
    reference: chr 0
allele count: 1
allele frequency: 1.142074006395614e-5
allele num: 87560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1443C>T
  hgvsp: ENST00000535894.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.843C>T
  hgvsp: ENST00000418858.3:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1734C>T
  hgvsp: ENST00000379374.4:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1734C>T
  hgvsp: ENST00000537599.1:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val578Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-22237195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237195
    reference: chr 0
allele count: 1
allele frequency: 1.14234798204229e-5
allele num: 87539
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1743A>G
  hgvsp: ENST00000537599.1:c.1743A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1452A>G
  hgvsp: ENST00000535894.1:c.1452A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1743A>G
  hgvsp: ENST00000379374.4:c.1743A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.852A>G
  hgvsp: ENST00000418858.3:c.852A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu581Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

X-22237200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237200
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237200
    reference: chr 0
allele count: 1
allele frequency: 1.142648201471731e-5
allele num: 87516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1748C>T
  hgvsp: ENSP00000440362.1:p.Thr583Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1457C>T
  hgvsp: ENSP00000439418.1:p.Thr486Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.857C>T
  hgvsp: ENSP00000443531.1:p.Thr286Ile
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1748C>T
  hgvsp: ENSP00000368682.4:p.Thr583Ile
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Thr583Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-22237229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237229
    reference: chr 0
allele count: 2
allele frequency: 2.301045825327611e-5
allele num: 86917
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+9C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+9C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+9C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+9C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

X-22237230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237230
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237230
    reference: chr 0
allele count: 3
allele frequency: 3.452919443389386e-5
allele num: 86883
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+10G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+10G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+10G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+10G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-22237253-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237253
    reference: chr 0
allele count: 1
allele frequency: 1.162912397809073e-5
allele num: 85991
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+33T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+33T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+33T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+33T>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6164
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

X-22237255-TATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237255
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237252
    reference: chr 0
allele count: 118
allele frequency: 1.372236629414706e-3
allele num: 85991
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+41_877+43delAAT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+41_1768+43delAAT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+41_1768+43delAAT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+41_1477+43delAAT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: TATA
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-22237262-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237262
    reference: chr 0
allele count: 4
allele frequency: 4.668752042579019e-5
allele num: 85676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+42A>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+42A>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+42A>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+42A>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 505
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

X-22237264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237264
    reference: chr 0
allele count: 3
allele frequency: 3.506065493303415e-5
allele num: 85566
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+44G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+44G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+44G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+44G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-22237271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022237271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022237271
    reference: chr 0
allele count: 21
allele frequency: 2.469890854347008e-4
allele num: 85024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1477+51A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1768+51A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.877+51A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1768+51A>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-22239683-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239683
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239683
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 85439
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-47A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-47A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-47A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-47A>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-22239687-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239687
    reference: chr 0
allele count: 52
allele frequency: 6.079738103589384e-4
allele num: 85530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-43T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-43T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-43T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-43T>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-22239710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239710
    reference: chr 0
allele count: 14
allele frequency: 1.628020559573924e-4
allele num: 85994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-20C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-20C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-20C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-20C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

X-22239711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239711
    reference: chr 0
allele count: 2
allele frequency: 2.323771015604122e-5
allele num: 86067
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-19G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-19G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-19G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-19G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-22239716-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239716
    reference: chr 0
allele count: 1
allele frequency: 1.15826538176427e-5
allele num: 86336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-14T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-14T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-14T>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-14T>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-22239720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239720
    reference: chr 0
allele count: 23711
allele frequency: 2.73660034162781e-1
allele num: 86644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.878-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1769-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1478-10C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1769-10C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 1003
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 597
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.25e1
  variant carriers: 1552
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.75e1
  variant carriers: 1325
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.25e1
  variant carriers: 1826
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.25e1
  variant carriers: 1196
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.75e1
  variant carriers: 1170
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.75e1
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 3.75e1
  variant carriers: 1754
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 9.75e1
  variant carriers: 2590
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 872
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 6.25e1
  variant carriers: 1280
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.25e1
  variant carriers: 1335
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.25e1
  variant carriers: 728
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 4.75e1
  variant carriers: 1420
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 2.75e1
  variant carriers: 1668
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 12869
  bin: 6.25e1
  variant carriers: 380
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 6.75e1
  variant carriers: 496
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 8.25e1
  variant carriers: 564
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.75e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.25e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 28693
  bin: 9.75e1
  variant carriers: 16805
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 9.25e1
  variant carriers: 579
num of homozygotes: 2356
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-22239734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239734
    reference: chr 0
allele count: 3
allele frequency: 3.438119577798916e-5
allele num: 87257
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1773A>G
  hgvsp: ENST00000379374.4:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.882A>G
  hgvsp: ENST00000418858.3:c.882A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1482A>G
  hgvsp: ENST00000535894.1:c.1482A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1773A>G
  hgvsp: ENST00000537599.1:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26347
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14426
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg591Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-22239755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239755
    reference: chr 0
allele count: 1
allele frequency: 1.144033863402357e-5
allele num: 87410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1503C>T
  hgvsp: ENST00000535894.1:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.903C>T
  hgvsp: ENST00000418858.3:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1794C>T
  hgvsp: ENST00000537599.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1794C>T
  hgvsp: ENST00000379374.4:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn598Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-22239770-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239770
    reference: chr 0
allele count: 1
allele frequency: 1.142857142857143e-5
allele num: 87500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1809G>T
  hgvsp: ENSP00000368682.4:p.Trp603Cys
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1809G>T
  hgvsp: ENSP00000440362.1:p.Trp603Cys
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1518G>T
  hgvsp: ENSP00000439418.1:p.Trp506Cys
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.918G>T
  hgvsp: ENSP00000443531.1:p.Trp306Cys
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26372
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5190
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp603Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-22239779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239779
    reference: chr 0
allele count: 10
allele frequency: 1.142217501056551e-4
allele num: 87549
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1527A>G
  hgvsp: ENST00000535894.1:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.927A>G
  hgvsp: ENST00000418858.3:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1818A>G
  hgvsp: ENST00000537599.1:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1818A>G
  hgvsp: ENST00000379374.4:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15034
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5240
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu606Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-22239780-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239780
    reference: chr 0
allele count: 1
allele frequency: 1.142204454597373e-5
allele num: 87550
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1819T>A
  hgvsp: ENSP00000368682.4:p.Ser607Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1528T>A
  hgvsp: ENSP00000439418.1:p.Ser510Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1819T>A
  hgvsp: ENSP00000440362.1:p.Ser607Thr
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.928T>A
  hgvsp: ENSP00000443531.1:p.Ser310Thr
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser607Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

X-22239860-T-TGTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239864
    reference: chr 0
allele count: 3
allele frequency: 3.421571870117132e-5
allele num: 87679
alternate allele: TGTGA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1008+3_1008+6dupGAGT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1899+3_1899+6dupGAGT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1608+3_1608+6dupGAGT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1899+3_1899+6dupGAGT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

X-22239880-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239879
    reference: chr 0
allele count: 27
allele frequency: 3.08064442517457e-4
allele num: 87644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1608+26delG
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1008+26delG
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1899+26delG
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1899+26delG
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: AG
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-22239882-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239882
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239882
    reference: chr 0
allele count: 5
allele frequency: 5.70834903129317e-5
allele num: 87591
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1899+22G>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1899+22G>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1608+22G>C
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1008+22G>C
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-22239896-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022239896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022239895
    reference: chr 0
allele count: 1
allele frequency: 1.141917507879231e-5
allele num: 87572
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1899+38delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1608+38delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1899+38delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1008+38delT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: GT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-22244512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244512
    reference: chr 0
allele count: 46
allele frequency: 5.495096223913225e-4
allele num: 83711
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-48C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-48C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-48C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-48C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-22244512-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244512
    reference: chr 0
allele count: 1
allele frequency: 1.19458613563331e-5
allele num: 83711
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-48C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-48C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-48C>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-48C>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14509
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

X-22244513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244513
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244513
    reference: chr 0
allele count: 120
allele frequency: 1.43528651907137e-3
allele num: 83607
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-47G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-47G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-47G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-47G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
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  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 352
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
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  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2049
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7934
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1962
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

X-22244515-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244515
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244516
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83538
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-42dupA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-42dupA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-42dupA
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-42dupA
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14518
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2005
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-22244521-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244521
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244521
    reference: chr 0
allele count: 2039
allele frequency: 2.486251844264794e-2
allele num: 82011
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-39C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-39C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-39C>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-39C>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 2.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 5.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 1.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 4.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 1.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 9.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 6.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 15269
  bin: 9.75e1
  variant carriers: 1487
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 9.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 10409
  bin: 6.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 2.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 8.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.25e1
  variant carriers: 36
num of homozygotes: 14
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

X-22244521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244521
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244521
    reference: chr 0
allele count: 48
allele frequency: 5.852873395032374e-4
allele num: 82011
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-39C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-39C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-39C>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-39C>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10409
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

X-22244522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244522
    reference: chr 0
allele count: 6
allele frequency: 7.327707282519754e-5
allele num: 81881
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-38G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-38G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-38G>A
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-38G>A
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10808
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-22244522-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244522
    reference: chr 0
allele count: 314
allele frequency: 3.834833477852005e-3
allele num: 81881
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-38G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-38G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-38G>T
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-38G>T
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 245
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6759
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10808
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 317
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genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.25e1
  variant carriers: 4
num of homozygotes: 3
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-22244524-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244524
    reference: chr 0
allele count: 1
allele frequency: 1.265918930551688e-5
allele num: 78994
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-36A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-36A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-36A>G
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-36A>G
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14771
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

X-22244528-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244527
    reference: chr 0
allele count: 3822
allele frequency: 5.911924391715263e-2
allele num: 64649
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-20delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-20delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-20delT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-20delT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 467
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 6.25e1
  variant carriers: 571
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 1054
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 765
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 888
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 1214
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 1442
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 748
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 1315
genotype quality: GenotypeQuality
  all individuals: 19162
  bin: 9.75e1
  variant carriers: 2595
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 211
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 430
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 778
genotype quality: GenotypeQuality
  all individuals: 9470
  bin: 2.5e0
  variant carriers: 618
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 472
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 755
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 619
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 592
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 732
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 695
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 787
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 460
num of homozygotes: 60
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: AT
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-22244528-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244526
    reference: chr 0
allele count: 21061
allele frequency: 3.257745672786895e-1
allele num: 64649
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-21_1900-20delTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-21_1900-20delTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-21_1009-20delTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-21_1609-20delTT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 1413
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 440
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 1240
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 1699
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 1483
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 6.25e1
  variant carriers: 1095
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 1511
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 801
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 2307
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 1072
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 1574
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 912
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 1006
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 1435
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.75e1
  variant carriers: 588
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 284
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 6.75e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 411
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 9470
  bin: 2.5e0
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 402
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 3.25e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 459
num of homozygotes: 1785
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: ATT
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-22244528-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244529
    reference: chr 0
allele count: 2837
allele frequency: 4.388312270878127e-2
allele num: 64649
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-20dupT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-20dupT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-20dupT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-20dupT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 638
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 6.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 552
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 727
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 386
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 178
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 561
genotype quality: GenotypeQuality
  all individuals: 9470
  bin: 2.5e0
  variant carriers: 461
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 505
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 19162
  bin: 9.75e1
  variant carriers: 1742
num of homozygotes: 27
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-22244528-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244530
    reference: chr 0
allele count: 17
allele frequency: 2.62958437098795e-4
allele num: 64649
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-21_1609-20dupTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-21_1900-20dupTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-21_1900-20dupTT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-21_1009-20dupTT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9470
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-22244528-ATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244525
    reference: chr 0
allele count: 13
allele frequency: 2.010858636637844e-4
allele num: 64649
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9470
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 19162
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5084
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3515
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.94811320754717e-4
  allele num: 6784
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7082
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: ATTT
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-22244529-T-TTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24022244532
    reference: chr 0
allele count: 1
allele frequency: 1.576044129235619e-4
allele num: 6345
alternate allele: TTTA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000368682
  ensembl transcript: ENST00000379374
  gene symbol: PHEX
  hgvsc: ENST00000379374.4:c.1900-29_1900-28insATT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000440362
  ensembl transcript: ENST00000537599
  gene symbol: PHEX
  hgvsc: ENST00000537599.1:c.1900-29_1900-28insATT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000443531
  ensembl transcript: ENST00000418858
  gene symbol: PHEX
  hgvsc: ENST00000418858.3:c.1009-29_1009-28insATT
  variant of: http://identifiers.org/hgnc/8918
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102174
  ensembl protein: ENSP00000439418
  ensembl transcript: ENST00000535894
  gene symbol: PHEX
  hgvsc: ENST00000535894.1:c.1609-29_1609-28insATT
  variant of: http://identifiers.org/hgnc/8918
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10579
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

X-22244549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24022244549
    reference: chr 0
allele count: 7
allele frequency: 8.146544701254568e-5
allele num: 85926
alternate allele: T
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11776
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47991
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.705e0

QD
type: SiteQuality
SIO_000300: 1.078e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.348e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 3.210229e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31880
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167534903104813e-5
allele num: 47990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 7.411e0

VQSLOD
type: SiteQuality
SIO_000300: -9.916e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.54e-2

QD
type: SiteQuality
SIO_000300: 1.898e1

DP
type: SiteQuality
SIO_000300: 3.2103e6

GenotypeQuality
all individuals: 2775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167448063178513e-5
allele num: 47991
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 3.210321e6

QD
type: SiteQuality
SIO_000300: 1.447e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.314e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.865e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.077e-1

DP
type: SiteQuality
SIO_000300: 3.210047e6

QD
type: SiteQuality
SIO_000300: 3.23e1

GenotypeQuality
all individuals: 31875
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47991
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.34852043212776e-4
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 2.25e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.674e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

DP
type: SiteQuality
SIO_000300: 3.209654e6

GenotypeQuality
all individuals: 2766
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.709575221976739e-4
allele num: 47978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

DP
type: SiteQuality
SIO_000300: 3.206624e6

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.887e1

FS
type: SiteQuality
SIO_000300: 1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.064e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.582278481012658e-3
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47971
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.205519e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

QD
type: SiteQuality
SIO_000300: 3.494e1

GenotypeQuality
all individuals: 2131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085853739935756e-5
allele num: 47942
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.254e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -8.19e-2

DP
type: SiteQuality
SIO_000300: 3.19996e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.206e0

GenotypeQuality
all individuals: 2726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.887284951552304e-5
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47907
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.475e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.182033e6

QD
type: SiteQuality
SIO_000300: 2.676e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.926e0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.890218573830482e-5
allele num: 10111
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.145443e6

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 2.818e1

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47854
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 3.133424e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

QD
type: SiteQuality
SIO_000300: 1.603e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e0

GenotypeQuality
all individuals: 3029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37949
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2915
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47911
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.237470610073011e-4
allele num: 8081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.595e0

FS
type: SiteQuality
SIO_000300: 4.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 3.317825e6

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.615e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 174

GenotypeQuality
all individuals: 39554
bin: 9.75e1
variant carriers: 20467

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 140

African
type: Population
allele count: 3558
allele frequency: 4.388258510113468e-1
allele num: 8108
num of homozygotes: 638

European (Finnish)
type: Population
allele count: 1502
allele frequency: 3.322273833222738e-1
allele num: 4521
num of homozygotes: 133

European (Non-Finnish)
type: Population
allele count: 16055
allele frequency: 3.366392686404429e-1
allele num: 47692
num of homozygotes: 1637

Latino
type: Population
allele count: 1164
allele frequency: 1.255798899557665e-1
allele num: 9269
num of homozygotes: 83

Other
type: Population
allele count: 181
allele frequency: 2.882165605095541e-1
allele num: 628
num of homozygotes: 17

South Asian
type: Population
allele count: 2302
allele frequency: 2.278080158337457e-1
allele num: 10105
num of homozygotes: 78

East Asian
type: Population
allele count: 1232
allele frequency: 1.87433439829606e-1
allele num: 6573
num of homozygotes: 82

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e1

FS
type: SiteQuality
SIO_000300: 1.731e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

QD
type: SiteQuality
SIO_000300: 2.464e1

DP
type: SiteQuality
SIO_000300: 3.421491e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.634e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 34134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47932
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.891196834817012e-5
allele num: 10110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 3.1813e6

VQSLOD
type: SiteQuality
SIO_000300: -1.799e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

GenotypeQuality
all individuals: 2052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8141
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47929
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.934718100890207e-4
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.323e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 3.182029e6

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 4.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.790000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 9062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086375964948884e-5
allele num: 47930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8141
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.75e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 3.182102e6

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

QD
type: SiteQuality
SIO_000300: 2.136e1

GenotypeQuality
all individuals: 2059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34136
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4092
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8187
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.171881518564873e-5
allele num: 47940
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.72e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

VQSLOD
type: SiteQuality
SIO_000300: -3.692e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

FS
type: SiteQuality
SIO_000300: 4.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.512e1

DP
type: SiteQuality
SIO_000300: 3.184236e6

GenotypeQuality
all individuals: 1596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.213886865744113e-4
allele num: 8238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47947
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.453e-1

DP
type: SiteQuality
SIO_000300: 3.185351e6

FS
type: SiteQuality
SIO_000300: 9.836e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.170054836221096e-5
allele num: 47961
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.972e0

QD
type: SiteQuality
SIO_000300: 1.504e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

DP
type: SiteQuality
SIO_000300: 3.187152e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.514e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9573
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 4.297378599054577e-4
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.027e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.188537e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.976e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084505867884018e-5
allele num: 47973
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.496e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

DP
type: SiteQuality
SIO_000300: 3.188289e6

FS
type: SiteQuality
SIO_000300: 8.227e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08494047494944e-5
allele num: 47963
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.096e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 3.187924e6

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

FS
type: SiteQuality
SIO_000300: 1.037e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085157846448976e-5
allele num: 47958
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 2.978e1

DP
type: SiteQuality
SIO_000300: 3.187742e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47945
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.978239366963402e-4
allele num: 10110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.716e1

DP
type: SiteQuality
SIO_000300: 3.181426e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.182732111176818e-4
allele num: 8455
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47924
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 9.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 3.172301e6

QD
type: SiteQuality
SIO_000300: 6.11e0

VQSLOD
type: SiteQuality
SIO_000300: -9.102e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.102e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

FS
type: SiteQuality
SIO_000300: 9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.260303416038898e-5
allele num: 47921
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183291918116199e-4
allele num: 8451
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10107
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.602e1

FS
type: SiteQuality
SIO_000300: 1.4304e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.486e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 3.167681e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.02e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.15633423180593e-4
allele num: 9275
num of homozygotes: 0

African
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allele count: 46
allele frequency: 5.447010065127295e-3
allele num: 8445
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.176586058555736e-5
allele num: 47886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.155228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.049e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47518
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Latino
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allele frequency: 0.0e0
allele num: 9266
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East Asian
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
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Other
type: Population
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allele frequency: 0.0e0
allele num: 623
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele num: 10007
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.091447e6

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 10007
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Other
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.208931352329643e-5
allele num: 47518
num of homozygotes: 0

East Asian
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.11e1

QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.096831687320459e-5
allele num: 47691
num of homozygotes: 0

Other
type: Population
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allele num: 625
num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele num: 627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47800
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.515610791148833e-4
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2397
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
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Other
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.090169930815375e-5
allele num: 47843
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.005e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

GenotypeQuality
all individuals: 5557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11829
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1849
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.17633219621221e-4
allele num: 8501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.708e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.12238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11828
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.902951079421667e-5
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.745e0

DP
type: SiteQuality
SIO_000300: 2.122641e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.147e1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.626e0

GenotypeQuality
all individuals: 1849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5563
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variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.903931860948797e-5
allele num: 10097
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.122876e6

VQSLOD
type: SiteQuality
SIO_000300: -2.409e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

GenotypeQuality
all individuals: 1850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32329
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074460083807887e-4
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10095
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.122021e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.79e-2

QD
type: SiteQuality
SIO_000300: 3.484e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

GenotypeQuality
all individuals: 5561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47857
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.911785112498761e-5
allele num: 10089
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

DP
type: SiteQuality
SIO_000300: 2.121372e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.731e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

FS
type: SiteQuality
SIO_000300: 7.548e0

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47477
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9991
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.158894645941278e-4
allele num: 9264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 2.097187e6

FS
type: SiteQuality
SIO_000300: 1.493e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

GenotypeQuality
all individuals: 1913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11826
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 3
allele frequency: 3.005710850616171e-4
allele num: 9981
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47457
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.26e-2

FS
type: SiteQuality
SIO_000300: 3.759e0

VQSLOD
type: SiteQuality
SIO_000300: -1.49e0

DP
type: SiteQuality
SIO_000300: 2.095091e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.91e1

GenotypeQuality
all individuals: 4641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4473
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8437
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.012350678274954e-4
allele num: 9878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9203
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.864e1

DP
type: SiteQuality
SIO_000300: 1.981456e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.904e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1108
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2775
bin: 7.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 92
allele frequency: 1.961913291962553e-3
allele num: 46893
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.431830526887561e-4
allele num: 9205
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.03828235770711e-4
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6497
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 4.016960499888418e-3
allele num: 4481
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.499e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.969472e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.702e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 2.398e1

GenotypeQuality
all individuals: 1840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.755677089525621e-4
allele num: 8411
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.934412e6

FS
type: SiteQuality
SIO_000300: 1.6679e1

QD
type: SiteQuality
SIO_000300: 1.885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.166e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11837
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.144312211858046e-5
allele num: 46635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4467
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.379819133745835e-4
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9175
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6457
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 1.6731e1

VQSLOD
type: SiteQuality
SIO_000300: -1.094e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.876e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 1.931007e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.045e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11839
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 5000
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.504173622704507e-3
allele num: 8386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6417
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46286
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.71e-2

DP
type: SiteQuality
SIO_000300: 1.916409e6

QD
type: SiteQuality
SIO_000300: 2.012e1

GenotypeQuality
all individuals: 8140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46705
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9905
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

FS
type: SiteQuality
SIO_000300: 2.413e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 1.931192e6

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

GenotypeQuality
all individuals: 1487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9911
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6411
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.169903439296951e-4
allele num: 9217
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 6.157635467980296e-3
allele num: 8120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.649999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 1.671e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.734e1

DP
type: SiteQuality
SIO_000300: 1.942285e6

GenotypeQuality
all individuals: 1612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19481
bin: 9.75e1
variant carriers: 12

South Asian
type: Population
allele count: 3
allele frequency: 3.006614552014432e-4
allele num: 9978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.348204436818238e-3
allele num: 8159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 2.418e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

DP
type: SiteQuality
SIO_000300: 2.02364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.184e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

QD
type: SiteQuality
SIO_000300: 2.51e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

GenotypeQuality
all individuals: 19491
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5258
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6457
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124134415225796e-5
allele num: 47078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9245
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001201441730076e-4
allele num: 9988
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.192e0

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

QD
type: SiteQuality
SIO_000300: 2.357e1

DP
type: SiteQuality
SIO_000300: 2.029361e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

GenotypeQuality
all individuals: 3188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47241
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10019
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.541307028360049e-4
allele num: 6488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8197
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.042478e6

VQSLOD
type: SiteQuality
SIO_000300: -2.77e-2

QD
type: SiteQuality
SIO_000300: 3.491e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 306

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 537

GenotypeQuality
all individuals: 1392
bin: 8.75e1
variant carriers: 328

East Asian
type: Population
allele count: 1110
allele frequency: 1.704545454545454e-1
allele num: 6512
num of homozygotes: 70

Latino
type: Population
allele count: 1025
allele frequency: 1.106194690265487e-1
allele num: 9266
num of homozygotes: 63

African
type: Population
allele count: 3722
allele frequency: 4.461759769839367e-1
allele num: 8342
num of homozygotes: 665

Other
type: Population
allele count: 156
allele frequency: 2.496e-1
allele num: 625
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 14508
allele frequency: 3.0641209765988e-1
allele num: 47348
num of homozygotes: 1380

South Asian
type: Population
allele count: 1750
allele frequency: 1.74042764793635e-1
allele num: 10055
num of homozygotes: 50

European (Finnish)
type: Population
allele count: 1440
allele frequency: 3.202846975088968e-1
allele num: 4496
num of homozygotes: 117

VQSLOD
type: SiteQuality
SIO_000300: 4.005e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.596e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 1.269e0

QD
type: SiteQuality
SIO_000300: 2.163e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 2.589772e6

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47779
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.9708853238265e-4
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6561
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8369
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

DP
type: SiteQuality
SIO_000300: 2.53622e6

MQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

FS
type: SiteQuality
SIO_000300: 2.227e0

QD
type: SiteQuality
SIO_000300: 1.154e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.799e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 2.545812e6

QD
type: SiteQuality
SIO_000300: 3.102e1

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.551062e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 3.166e1

GenotypeQuality
all individuals: 26381
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6595
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47919
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.185255422543558e-3
allele num: 8437
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

DP
type: SiteQuality
SIO_000300: 2.553768e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 5.026e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.092e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

QD
type: SiteQuality
SIO_000300: 2.351e1

GenotypeQuality
all individuals: 3602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47917
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.184974523047754e-4
allele num: 8439
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

DP
type: SiteQuality
SIO_000300: 2.553826e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.252214325907092e-5
allele num: 47983
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.56004e6

QD
type: SiteQuality
SIO_000300: 2.374e1

VQSLOD
type: SiteQuality
SIO_000300: -1.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.470000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -2.708e0

MQ
type: SiteQuality
SIO_000300: 5.552e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.516e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084114876411988e-5
allele num: 47982
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145232221387965e-4
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.846299810246679e-3
allele num: 8432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.559704e6

MQ
type: SiteQuality
SIO_000300: 6.004e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

FS
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.416e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

QD
type: SiteQuality
SIO_000300: 1.594e1

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.018867924528302e-4
allele num: 6625
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.219229531065565e-4
allele num: 9319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8383
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.379e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e0

DP
type: SiteQuality
SIO_000300: 2.560144e6

GenotypeQuality
all individuals: 26399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8385
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07284626113078e-4
allele num: 9321
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

DP
type: SiteQuality
SIO_000300: 2.555756e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.06e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

GenotypeQuality
all individuals: 8276
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 3.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192021043402017e-5
allele num: 45620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6079
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

South Asian
type: Population
allele count: 45
allele frequency: 4.617752693689072e-3
allele num: 9745
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.165e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.13e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 2.170352e6

GenotypeQuality
all individuals: 2398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9745
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192021043402017e-5
allele num: 45620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6079
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8981
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.13e-2

QD
type: SiteQuality
SIO_000300: 2.165e1

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 2.170352e6

GenotypeQuality
all individuals: 1265
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14548
bin: 9.75e1
variant carriers: 103

GenotypeQuality
all individuals: 2704
bin: 7.75e1
variant carriers: 2

Latino
type: Population
allele count: 7
allele frequency: 7.79423226812159e-4
allele num: 8981
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9741
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6071
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.097598454581376e-4
allele num: 45554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4425
num of homozygotes: 0

African
type: Population
allele count: 108
allele frequency: 1.314028470616863e-2
allele num: 8219
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 2.176193e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 2.749e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
all individuals: 1981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9011
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9733
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6083
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 2.189901e6

QD
type: SiteQuality
SIO_000300: 2.497e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQ
type: SiteQuality
SIO_000300: 6.083e1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
all individuals: 2765
bin: 7.75e1
variant carriers: 47

GenotypeQuality
all individuals: 934
bin: 4.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 18

South Asian
type: Population
allele count: 267
allele frequency: 2.78415015641293e-2
allele num: 9590
num of homozygotes: 2

African
type: Population
allele count: 28
allele frequency: 3.444881889763779e-3
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1440
allele frequency: 3.24127219933824e-2
allele num: 44427
num of homozygotes: 9

Other
type: Population
allele count: 22
allele frequency: 3.666666666666667e-2
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 130
allele frequency: 1.449598572702944e-2
allele num: 8968
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 152
allele frequency: 3.555555555555556e-2
allele num: 4275
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6023
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.498e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.586e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 2.11e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.273915e6

GenotypeQuality
all individuals: 2726
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2765
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15269
bin: 9.75e1
variant carriers: 37

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.339181286549708e-3
allele num: 4275
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6023
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 7.653003803993067e-4
allele num: 44427
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.085505735140772e-4
allele num: 9590
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.333333333333334e-3
allele num: 600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

VQSLOD
type: SiteQuality
SIO_000300: 2.586e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.498e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 2.11e1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 2.273915e6

GenotypeQuality
all individuals: 865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14914
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1290
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9575
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.115946880928468e-4
allele num: 8961
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.155361319709467e-4
allele num: 8123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4263
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.563e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 2.295305e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

QD
type: SiteQuality
SIO_000300: 1.992e1

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2016
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 14914
bin: 9.75e1
variant carriers: 273

Latino
type: Population
allele count: 12
allele frequency: 1.339136257114161e-3
allele num: 8961
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.044386422976501e-4
allele num: 9575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.76467935419861e-5
allele num: 44348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

African
type: Population
allele count: 298
allele frequency: 3.668595346546842e-2
allele num: 8123
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.563e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
type: SiteQuality
SIO_000300: 2.295305e6

QD
type: SiteQuality
SIO_000300: 1.992e1

GenotypeQuality
all individuals: 779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5915
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.359937697644782e-5
allele num: 42374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7933
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8893
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

DP
type: SiteQuality
SIO_000300: 2.367825e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 6.007e1

GenotypeQuality
all individuals: 1349
bin: 6.75e1
variant carriers: 312

GenotypeQuality
all individuals: 2108
bin: 3.25e1
variant carriers: 641

GenotypeQuality
all individuals: 1672
bin: 6.25e1
variant carriers: 396

East Asian
type: Population
allele count: 159
allele frequency: 3.127458693941778e-2
allele num: 5084
num of homozygotes: 0

Latino
type: Population
allele count: 577
allele frequency: 9.623082054703136e-2
allele num: 5996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 25
allele frequency: 7.112375533428165e-3
allele num: 3515
num of homozygotes: 0

African
type: Population
allele count: 1342
allele frequency: 1.978183962264151e-1
allele num: 6784
num of homozygotes: 60

South Asian
type: Population
allele count: 369
allele frequency: 5.210392544478961e-2
allele num: 7082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1328
allele frequency: 3.719367035429211e-2
allele num: 35705
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 4.554865424430642e-2
allele num: 483
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.307e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 3.177727e6

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
all individuals: 19162
bin: 9.75e1
variant carriers: 14538

GenotypeQuality
all individuals: 1918
bin: 4.25e1
variant carriers: 283

GenotypeQuality
all individuals: 844
bin: 8.75e1
variant carriers: 343

South Asian
type: Population
allele count: 1571
allele frequency: 2.21829991527817e-1
allele num: 7082
num of homozygotes: 43

Other
type: Population
allele count: 155
allele frequency: 3.209109730848861e-1
allele num: 483
num of homozygotes: 12

Latino
type: Population
allele count: 916
allele frequency: 1.527685123415611e-1
allele num: 5996
num of homozygotes: 59

European (Finnish)
type: Population
allele count: 1441
allele frequency: 4.099573257467994e-1
allele num: 3515
num of homozygotes: 124

European (Non-Finnish)
type: Population
allele count: 14290
allele frequency: 4.002240582551463e-1
allele num: 35705
num of homozygotes: 1360

African
type: Population
allele count: 1665
allele frequency: 2.454304245283019e-1
allele num: 6784
num of homozygotes: 130

East Asian
type: Population
allele count: 1023
allele frequency: 2.01219512195122e-1
allele num: 5084
num of homozygotes: 57

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.307e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 3.177727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
all individuals: 2108
bin: 3.25e1
variant carriers: 344

GenotypeQuality
all individuals: 1349
bin: 6.75e1
variant carriers: 120

GenotypeQuality
all individuals: 1083
bin: 7.75e1
variant carriers: 114

Latino
type: Population
allele count: 263
allele frequency: 4.386257505003335e-2
allele num: 5996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 456
allele frequency: 1.277132054334127e-2
allele num: 35705
num of homozygotes: 0

African
type: Population
allele count: 304
allele frequency: 4.481132075471698e-2
allele num: 6784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 76
allele frequency: 2.162162162162162e-2
allele num: 3515
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 4.554865424430642e-2
allele num: 483
num of homozygotes: 1

East Asian
type: Population
allele count: 1346
allele frequency: 2.647521636506688e-1
allele num: 5084
num of homozygotes: 26

South Asian
type: Population
allele count: 370
allele frequency: 5.224512849477549e-2
allele num: 7082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e0

QD
type: SiteQuality
SIO_000300: 1.392e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.307e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 3.177727e6

GenotypeQuality
all individuals: 1650
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19162
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1918
bin: 4.25e1
variant carriers: 4

East Asian
type: Population
allele count: 16
allele frequency: 3.147128245476003e-3
allele num: 5084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.800728189329226e-5
allele num: 35705
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3515
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.307e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.392e1

DP
type: SiteQuality
SIO_000300: 3.177727e6

VQSLOD
type: SiteQuality
SIO_000300: 7.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 3.080801008262148e-4
allele num: 35705
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 483
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.177727e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.307e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 423
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3531
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

DP
type: SiteQuality
SIO_000300: 7.87576e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 6.21e0

MQ
type: SiteQuality
SIO_000300: 5.93e1