X-102612638-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612638
    reference: chr 0
allele count: 1
allele frequency: 1.698138839831544e-5
allele num: 58888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.26G>T
  hgvsp: ENSP00000361740.3:p.Gly9Val
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.26G>T
  hgvsp: ENSP00000361745.3:p.Gly9Val
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
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  variant carriers: 0
hgvs: p.Gly9Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 445
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-102612646-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612646
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612646
    reference: chr 0
allele count: 2
allele frequency: 3.092337188447028e-5
allele num: 64676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.34G>C
  hgvsp: ENSP00000361740.3:p.Glu12Gln
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.34G>C
  hgvsp: ENSP00000361745.3:p.Glu12Gln
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 133
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  variant carriers: 0
hgvs: p.Glu12Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7145
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-102612648-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612648
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 66101
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.36A>G
  hgvsp: ENST00000372656.3:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.36A>G
  hgvsp: ENST00000372661.3:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1827
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  variant carriers: 0
hgvs: p.Glu12Glu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 35090
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-102612659-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612659
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612659
    reference: chr 0
allele count: 1
allele frequency: 1.373362265498393e-5
allele num: 72814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.47A>T
  hgvsp: ENSP00000361745.3:p.Glu16Val
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.47A>T
  hgvsp: ENSP00000361740.3:p.Glu16Val
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu16Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3964
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

X-102612660-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612660
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612660
    reference: chr 0
allele count: 1
allele frequency: 1.365728411248139e-5
allele num: 73221
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.48A>G
  hgvsp: ENST00000372656.3:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.48A>G
  hgvsp: ENST00000372661.3:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Glu16Glu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8055
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-102612662-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612661
    reference: chr 0
allele count: 1
allele frequency: 1.347109775975644e-5
allele num: 74233
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.53delA
  hgvsp: ENSP00000361745.3:p.Lys18SerfsTer18
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.53delA
  hgvsp: ENSP00000361740.3:p.Lys18SerfsTer18
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys18SerfsTer18
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8218
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CA
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-102612677-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612677
    reference: chr 0
allele count: 1
allele frequency: 1.243456311162507e-5
allele num: 80421
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.65A>G
  hgvsp: ENSP00000361740.3:p.Glu22Gly
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.65A>G
  hgvsp: ENSP00000361745.3:p.Glu22Gly
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 550
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 412
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  variant carriers: 0
hgvs: p.Glu22Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8805
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-102612697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612697
    reference: chr 0
allele count: 2
allele frequency: 2.358935648235516e-5
allele num: 84784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.85C>T
  hgvsp: ENSP00000361740.3:p.Pro29Ser
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.85C>T
  hgvsp: ENSP00000361745.3:p.Pro29Ser
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 577
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  variant carriers: 0
hgvs: p.Pro29Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.407318247472316e-4
  allele num: 8308
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-102612702-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612702
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612699
    reference: chr 0
allele count: 12
allele frequency: 1.401623547275594e-4
allele num: 85615
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.97_99delGAG
  hgvsp: ENSP00000361745.3:p.Glu33del
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.97_99delGAG
  hgvsp: ENSP00000361740.3:p.Glu33del
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 221
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 618
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu33del
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4494
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: AGAG
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-102612705-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612705
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612705
    reference: chr 0
allele count: 1
allele frequency: 1.163805644457376e-5
allele num: 85925
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.93G>C
  hgvsp: ENSP00000361745.3:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.93G>C
  hgvsp: ENSP00000361740.3:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu31Asp
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9732
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
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site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-102612723-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612723
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612723
    reference: chr 0
allele count: 1
allele frequency: 1.149319602795145e-5
allele num: 87008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.111G>C
  hgvsp: ENSP00000361745.3:p.Glu37Asp
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.111G>C
  hgvsp: ENSP00000361740.3:p.Glu37Asp
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9919
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
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X-102612729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612729
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612729
    reference: chr 0
allele count: 1
allele frequency: 1.146381446962662e-5
allele num: 87231
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.117C>T
  hgvsp: ENST00000372656.3:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.117C>T
  hgvsp: ENST00000372661.3:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala39Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4524
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
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site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
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site quality: DP

X-102612756-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612756
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612756
    reference: chr 0
allele count: 3
allele frequency: 3.424266636228741e-5
allele num: 87610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.144G>T
  hgvsp: ENSP00000361740.3:p.Arg48Ser
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.144G>T
  hgvsp: ENSP00000361745.3:p.Arg48Ser
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg48Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8496
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

X-102612765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612765
    reference: chr 0
allele count: 1
allele frequency: 1.140966398539563e-5
allele num: 87645
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.153A>G
  hgvsp: ENST00000372656.3:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.153A>G
  hgvsp: ENST00000372661.3:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln51Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9312
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-102612801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612801
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612801
    reference: chr 0
allele count: 1
allele frequency: 1.140497941401216e-5
allele num: 87681
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.189G>A
  hgvsp: ENST00000372656.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.189G>A
  hgvsp: ENST00000372661.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg63Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 9.894132779261898e-5
  allele num: 10107
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

X-102612803-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612803
    reference: chr 0
allele count: 1
allele frequency: 1.14038088721633e-5
allele num: 87690
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.191A>T
  hgvsp: ENSP00000361745.3:p.His64Leu
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.191A>T
  hgvsp: ENSP00000361740.3:p.His64Leu
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.His64Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8485
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

X-102612809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612809
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612809
    reference: chr 0
allele count: 1
allele frequency: 1.140458920669678e-5
allele num: 87684
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.197G>A
  hgvsp: ENSP00000361745.3:p.Ser66Asn
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.197G>A
  hgvsp: ENSP00000361740.3:p.Ser66Asn
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser66Asn
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8484
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

X-102612827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612827
    reference: chr 0
allele count: 2
allele frequency: 2.280865816664006e-5
allele num: 87686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.215G>A
  hgvsp: ENSP00000361740.3:p.Arg72Lys
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.215G>A
  hgvsp: ENSP00000361745.3:p.Arg72Lys
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg72Lys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8479
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

X-102612827-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612827
    reference: chr 0
allele count: 1
allele frequency: 1.140432908332003e-5
allele num: 87686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.215G>C
  hgvsp: ENSP00000361740.3:p.Arg72Thr
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.215G>C
  hgvsp: ENSP00000361745.3:p.Arg72Thr
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg72Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8479
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-102612846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612846
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612846
    reference: chr 0
allele count: 1
allele frequency: 1.141500388110132e-5
allele num: 87604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.234T>C
  hgvsp: ENST00000372656.3:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.234T>C
  hgvsp: ENST00000372661.3:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp78Asp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.07284626113078e-4
  allele num: 9321
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-102612857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612857
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612857
    reference: chr 0
allele count: 1
allele frequency: 1.143432125869008e-5
allele num: 87456
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.245G>A
  hgvsp: ENSP00000361745.3:p.Arg82Lys
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.245G>A
  hgvsp: ENSP00000361740.3:p.Arg82Lys
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg82Lys
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 629
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
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site quality: VQSLOD
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site quality: DP
site quality: QD

X-102612874-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612874
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612874
    reference: chr 0
allele count: 1
allele frequency: 1.150800957466397e-5
allele num: 86896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.262A>T
  hgvsp: ENSP00000361740.3:p.Ile88Leu
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.262A>T
  hgvsp: ENSP00000361745.3:p.Ile88Leu
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile88Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6636
  num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
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site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
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X-102612875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612875
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612875
    reference: chr 0
allele count: 1
allele frequency: 1.152405646787669e-5
allele num: 86775
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.263T>C
  hgvsp: ENSP00000361745.3:p.Ile88Thr
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.263T>C
  hgvsp: ENSP00000361740.3:p.Ile88Thr
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile88Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4529
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
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X-102612881-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612881
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612881
    reference: chr 0
allele count: 1
allele frequency: 1.156350096555233e-5
allele num: 86479
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.269T>C
  hgvsp: ENSP00000361740.3:p.Met90Thr
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.269T>C
  hgvsp: ENSP00000361745.3:p.Met90Thr
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Met90Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47650
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
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site quality: VQSLOD

X-102612883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612883
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612883
    reference: chr 0
allele count: 2
allele frequency: 2.317335990545269e-5
allele num: 86306
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.271C>T
  hgvsp: ENSP00000361745.3:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.271C>T
  hgvsp: ENSP00000361740.3:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg91Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4527
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-102612884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612884
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612884
    reference: chr 0
allele count: 2
allele frequency: 2.320131783485302e-5
allele num: 86202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.272G>A
  hgvsp: ENSP00000361740.3:p.Arg91His
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.272G>A
  hgvsp: ENSP00000361745.3:p.Arg91His
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg91His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4527
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

X-102612887-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612887
    reference: chr 0
allele count: 1
allele frequency: 1.162696059623054e-5
allele num: 86007
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.275G>T
  hgvsp: ENSP00000361745.3:p.Trp92Leu
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.275G>T
  hgvsp: ENSP00000361740.3:p.Trp92Leu
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Trp92Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8420
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-102612888-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612889
    reference: chr 0
allele count: 1
allele frequency: 1.164117249889409e-5
allele num: 85902
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.278dupA
  hgvsp: ENSP00000361745.3:p.Val94GlyfsTer2
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.278dupA
  hgvsp: ENSP00000361740.3:p.Val94GlyfsTer2
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val94GlyfsTer2
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4527
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-102612898-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612898
    reference: chr 0
allele count: 1
allele frequency: 1.185719197979535e-5
allele num: 84337
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.286C>G
  hgvsp: ENSP00000361745.3:p.Arg96Gly
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.286C>G
  hgvsp: ENSP00000361740.3:p.Arg96Gly
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg96Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.137026114459119e-5
  allele num: 46794
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

X-102612898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612898
    reference: chr 0
allele count: 1
allele frequency: 1.185719197979535e-5
allele num: 84337
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.286C>T
  hgvsp: ENSP00000361740.3:p.Arg96Ter
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.286C>T
  hgvsp: ENSP00000361745.3:p.Arg96Ter
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg96Ter
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.207146306132303e-4
  allele num: 8284
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
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X-102612905-A-G
type: Variant
location: Region
  begin: Position
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    position: 24102612905
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612905
    reference: chr 0
allele count: 1
allele frequency: 1.201316643040773e-5
allele num: 83242
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.293A>G
  hgvsp: ENSP00000361745.3:p.His98Arg
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.293A>G
  hgvsp: ENSP00000361740.3:p.His98Arg
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.His98Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4499
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population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
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site quality: FS
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site quality: VQSLOD
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X-102612906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612906
    reference: chr 0
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    type: ExactPosition
    position: 24102612906
    reference: chr 0
allele count: 1
allele frequency: 1.207583625166043e-5
allele num: 82810
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.294T>C
  hgvsp: ENST00000372661.3:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.294T>C
  hgvsp: ENST00000372656.3:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.His98His
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 46105
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
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site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
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X-102612928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612928
    reference: chr 0
allele count: 1
allele frequency: 1.338795619460733e-5
allele num: 74694
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*1T>C
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*1T>C
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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  allele num: 8686
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population: European (Finnish)
population: South Asian
population: African
population: Other
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population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
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site quality: DP
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X-102612934-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612934
    reference: chr 0
allele count: 1
allele frequency: 1.366400218624035e-5
allele num: 73185
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*7T>C
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*7T>C
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele num: 5882
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population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
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X-102612937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612937
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612937
    reference: chr 0
allele count: 1
allele frequency: 1.381005648313102e-5
allele num: 72411
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*10A>G
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*10A>G
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: East Asian
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population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
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site quality: ReadPosRankSum
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X-102612943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612943
    reference: chr 0
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    type: ExactPosition
    position: 24102612943
    reference: chr 0
allele count: 1
allele frequency: 1.427939055561109e-5
allele num: 70031
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*16A>G
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*16A>G
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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population: European (Non-Finnish)
population: East Asian
population: Latino
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X-102612948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612948
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68137
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*21A>G
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*21A>G
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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X-102612955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
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allele num: 66645
alternate allele: T
annotation: Annotation
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  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
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  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
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  ensembl protein: ENSP00000361745
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  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*28C>T
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
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genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 37597
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

X-102612956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612956
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 65996
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*29A>G
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*29A>G
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12011
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genotype depth: GenotypeDepth
  all individuals: 220
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4047
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-102612963-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102612963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102612963
    reference: chr 0
allele count: 6
allele frequency: 9.477774618519572e-5
allele num: 63306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361740
  ensembl transcript: ENST00000372656
  gene symbol: WBP5
  hgvsc: ENST00000372656.3:c.*36T>C
  variant of: http://identifiers.org/hgnc/30084
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185222
  ensembl protein: ENSP00000361745
  ensembl transcript: ENST00000372661
  gene symbol: WBP5
  hgvsc: ENST00000372661.3:c.*36T>C
  variant of: http://identifiers.org/hgnc/30084
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4923
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

X-102632376-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632376
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632377
    reference: chr 0
allele count: 1
allele frequency: 1.243719217949356e-5
allele num: 80404
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-43dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-61dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-29-14dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-29-14dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-61dupA
  variant of: http://identifiers.org/hgnc/13388
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-102632387-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632387
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632387
    reference: chr 0
allele count: 1
allele frequency: 1.240094743238383e-5
allele num: 80639
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-29-4A>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-29-4A>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-51A>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-51A>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-33A>C
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1171
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
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  variant carriers: 0
hgvs: c.-29-4A>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-102632399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632399
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632399
    reference: chr 0
allele count: 1
allele frequency: 1.232316261645389e-5
allele num: 81148
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-21C>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-39C>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-39C>T
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17870
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-102632400-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632399
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-19delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-37delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-19delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-19delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-37delA
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17870
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: CA
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

X-102632402-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632402
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632403
    reference: chr 0
allele count: 84
allele frequency: 1.187144916475875e-3
allele num: 70758
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-8dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-26dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-8dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-8dupA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-26dupA
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 7063
  bin: 2.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 7339
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.5e0
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17536
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

X-102632402-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632402
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632401
    reference: chr 0
allele count: 188
allele frequency: 2.656943384493626e-3
allele num: 70758
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-8delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-26delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-8delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-8delA
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-26delA
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 9.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 7063
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 17536
  bin: 6.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 2.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 2.75e1
  variant carriers: 16
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-102632403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632403
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632403
    reference: chr 0
allele count: 1
allele frequency: 1.398620959733703e-5
allele num: 71499
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-35A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-35A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-17A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-17A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-17A>G
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-102632408-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632408
    reference: chr 0
allele count: 8
allele frequency: 9.618390362372857e-5
allele num: 83174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-30A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-12A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-12A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-30A>T
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-102632411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632411
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632411
    reference: chr 0
allele count: 2
allele frequency: 2.400326444396438e-5
allele num: 83322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-9A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-27A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-9A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-27A>G
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-9A>G
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6403
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-102632413-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632413
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632413
    reference: chr 0
allele count: 3
allele frequency: 3.595958143047215e-5
allele num: 83427
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-7T>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-7T>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-25T>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-25T>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-102632414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632414
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632414
    reference: chr 0
allele count: 1
allele frequency: 1.197934760472945e-5
allele num: 83477
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.-6C>A
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-12-24C>A
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.-6C>A
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-12-24C>A
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7729
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8025
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

X-102632448-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632448
    reference: chr 0
allele count: 1
allele frequency: 1.159178374368248e-5
allele num: 86268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.29A>T
  hgvsp: ENSP00000361718.1:p.Glu10Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-2A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-2A>T
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.29A>T
  hgvsp: ENSP00000299872.7:p.Glu10Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.29A>T
  hgvsp: ENSP00000361728.3:p.Glu10Val
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20873
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
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genotype depth: GenotypeDepth
  all individuals: 283
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
  all individuals: 212
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genotype quality: GenotypeQuality
  all individuals: 71
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8206
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu10Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-102632449-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632449
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632449
    reference: chr 0
allele count: 1
allele frequency: 1.158412974225311e-5
allele num: 86325
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.30G>C
  hgvsp: ENSP00000361718.1:p.Glu10Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.-1G>C
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.30G>C
  hgvsp: ENSP00000299872.7:p.Glu10Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.30G>C
  hgvsp: ENSP00000361728.3:p.Glu10Asp
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31679
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu10Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-102632491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632491
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632491
    reference: chr 0
allele count: 1
allele frequency: 1.140641040264629e-5
allele num: 87670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.72G>A
  hgvsp: ENST00000372645.3:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.42G>A
  hgvsp: ENST00000372634.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.42G>A
  hgvsp: ENST00000361298.4:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.72G>A
  hgvsp: ENST00000299872.7:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.72G>A
  hgvsp: ENST00000372635.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7725
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu24Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-102632509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632509
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632509
    reference: chr 0
allele count: 1
allele frequency: 1.139886923217217e-5
allele num: 87728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.60C>T
  hgvsp: ENST00000372634.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.60C>T
  hgvsp: ENST00000361298.4:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.90C>T
  hgvsp: ENST00000372635.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.90C>T
  hgvsp: ENST00000299872.7:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.90C>T
  hgvsp: ENST00000372645.3:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 668
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8379
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 33537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His30His
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS

X-102632519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632519
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632519
    reference: chr 0
allele count: 2
allele frequency: 2.279514007613577e-5
allele num: 87738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.70G>A
  hgvsp: ENSP00000354843.4:p.Gly24Arg
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.100G>A
  hgvsp: ENSP00000361718.1:p.Gly34Arg
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.100G>A
  hgvsp: ENSP00000299872.7:p.Gly34Arg
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.100G>A
  hgvsp: ENSP00000361728.3:p.Gly34Arg
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.70G>A
  hgvsp: ENSP00000361717.1:p.Gly24Arg
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8386
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly34Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

X-102632522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632522
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.103A>G
  hgvsp: ENSP00000361728.3:p.Asn35Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.103A>G
  hgvsp: ENSP00000299872.7:p.Asn35Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.103A>G
  hgvsp: ENSP00000361718.1:p.Asn35Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.73A>G
  hgvsp: ENSP00000361717.1:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.73A>G
  hgvsp: ENSP00000354843.4:p.Asn25Asp
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
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genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1698
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 33571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn35Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

X-102632528-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632528
    reference: chr 0
allele count: 1
allele frequency: 1.139705044334526e-5
allele num: 87742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.109C>G
  hgvsp: ENSP00000299872.7:p.Arg37Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.79C>G
  hgvsp: ENSP00000354843.4:p.Arg27Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.79C>G
  hgvsp: ENSP00000361717.1:p.Arg27Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.109C>G
  hgvsp: ENSP00000361728.3:p.Arg37Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.109C>G
  hgvsp: ENSP00000361718.1:p.Arg37Gly
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8389
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg37Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-102632534-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632534
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632534
    reference: chr 0
allele count: 1
allele frequency: 1.139718033758448e-5
allele num: 87741
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.115C>G
  hgvsp: ENSP00000361728.3:p.Gln39Glu
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.85C>G
  hgvsp: ENSP00000361717.1:p.Gln29Glu
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.115C>G
  hgvsp: ENSP00000361718.1:p.Gln39Glu
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.115C>G
  hgvsp: ENSP00000299872.7:p.Gln39Glu
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.85C>G
  hgvsp: ENSP00000354843.4:p.Gln29Glu
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10024
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genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33536
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln39Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-102632544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632544
    reference: chr 0
allele count: 1
allele frequency: 1.140081857877396e-5
allele num: 87713
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.125G>A
  hgvsp: ENSP00000361718.1:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.125G>A
  hgvsp: ENSP00000361728.3:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.125G>A
  hgvsp: ENSP00000299872.7:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.95G>A
  hgvsp: ENSP00000354843.4:p.Arg32Gln
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.95G>A
  hgvsp: ENSP00000361717.1:p.Arg32Gln
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33606
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7659
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg42Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-102632561-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632561
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632561
    reference: chr 0
allele count: 2
allele frequency: 2.279046446966589e-5
allele num: 87756
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.142C>G
  hgvsp: ENSP00000361728.3:p.Arg48Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.142C>G
  hgvsp: ENSP00000299872.7:p.Arg48Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.112C>G
  hgvsp: ENSP00000354843.4:p.Arg38Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.142C>G
  hgvsp: ENSP00000361718.1:p.Arg48Gly
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.112C>G
  hgvsp: ENSP00000361717.1:p.Arg38Gly
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1172
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg48Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

X-102632561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632561
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632561
    reference: chr 0
allele count: 1
allele frequency: 1.139523223483295e-5
allele num: 87756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.142C>T
  hgvsp: ENSP00000361728.3:p.Arg48Ter
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.112C>T
  hgvsp: ENSP00000354843.4:p.Arg38Ter
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.112C>T
  hgvsp: ENSP00000361717.1:p.Arg38Ter
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.142C>T
  hgvsp: ENSP00000299872.7:p.Arg48Ter
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.142C>T
  hgvsp: ENSP00000361718.1:p.Arg48Ter
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7670
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg48Ter
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

X-102632570-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632570
    reference: chr 0
allele count: 10
allele frequency: 1.139523223483295e-4
allele num: 87756
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.151A>G
  hgvsp: ENSP00000361728.3:p.Ile51Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.151A>G
  hgvsp: ENSP00000299872.7:p.Ile51Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.121A>G
  hgvsp: ENSP00000354843.4:p.Ile41Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.121A>G
  hgvsp: ENSP00000361717.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.151A>G
  hgvsp: ENSP00000361718.1:p.Ile51Val
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8415
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2312
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genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1171
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile51Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-102632578-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632578
    reference: chr 0
allele count: 1
allele frequency: 1.139497253811618e-5
allele num: 87758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.159T>C
  hgvsp: ENST00000372635.1:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.159T>C
  hgvsp: ENST00000299872.7:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.129T>C
  hgvsp: ENST00000361298.4:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.159T>C
  hgvsp: ENST00000372645.3:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.129T>C
  hgvsp: ENST00000372634.1:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn53Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-102632584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632584
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632584
    reference: chr 0
allele count: 3
allele frequency: 3.418452808258982e-5
allele num: 87759
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.165G>A
  hgvsp: ENST00000299872.7:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.135G>A
  hgvsp: ENST00000361298.4:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.165G>A
  hgvsp: ENST00000372645.3:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.135G>A
  hgvsp: ENST00000372634.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.165G>A
  hgvsp: ENST00000372635.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33634
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8413
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Gln55Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-102632585-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632585
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632585
    reference: chr 0
allele count: 1
allele frequency: 1.139510238499493e-5
allele num: 87757
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.136A>T
  hgvsp: ENSP00000361717.1:p.Ile46Phe
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.166A>T
  hgvsp: ENSP00000299872.7:p.Ile56Phe
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.166A>T
  hgvsp: ENSP00000361718.1:p.Ile56Phe
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.136A>T
  hgvsp: ENSP00000354843.4:p.Ile46Phe
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.166A>T
  hgvsp: ENSP00000361728.3:p.Ile56Phe
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7665
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile56Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum

X-102632587-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632587
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632587
    reference: chr 0
allele count: 1
allele frequency: 1.139497253811618e-5
allele num: 87758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.138C>A
  hgvsp: ENST00000361298.4:c.138C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.138C>A
  hgvsp: ENST00000372634.1:c.138C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.168C>A
  hgvsp: ENST00000299872.7:c.168C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.168C>A
  hgvsp: ENST00000372635.1:c.168C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.168C>A
  hgvsp: ENST00000372645.3:c.168C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 12465
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genotype depth: GenotypeDepth
  all individuals: 355
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 3255
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2505
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genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile56Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-102632629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632629
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632629
    reference: chr 0
allele count: 1
allele frequency: 1.139510238499493e-5
allele num: 87757
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.180C>T
  hgvsp: ENST00000372634.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.210C>T
  hgvsp: ENST00000299872.7:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.210C>T
  hgvsp: ENST00000372635.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.210C>T
  hgvsp: ENST00000372645.3:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.180C>T
  hgvsp: ENST00000361298.4:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
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genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33615
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 7666
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe70Phe
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

X-102632633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632633
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632633
    reference: chr 0
allele count: 1
allele frequency: 1.139575166377974e-5
allele num: 87752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.184G>A
  hgvsp: ENSP00000354843.4:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.214G>A
  hgvsp: ENSP00000361728.3:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.214G>A
  hgvsp: ENSP00000361718.1:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.184G>A
  hgvsp: ENSP00000361717.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.214G>A
  hgvsp: ENSP00000299872.7:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12471
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genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33597
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7666
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu72Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-102632653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632653
    reference: chr 0
allele count: 2
allele frequency: 2.280553718442838e-5
allele num: 87698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.204A>G
  hgvsp: ENST00000372634.1:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.234A>G
  hgvsp: ENST00000372635.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.234A>G
  hgvsp: ENST00000372645.3:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.204A>G
  hgvsp: ENST00000361298.4:c.204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.234A>G
  hgvsp: ENST00000299872.7:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2502
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33462
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg78Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-102632669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632669
    reference: chr 0
allele count: 2
allele frequency: 2.287701317715959e-5
allele num: 87424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.250C>T
  hgvsp: ENST00000372635.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.250C>T
  hgvsp: ENST00000299872.7:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.220C>T
  hgvsp: ENST00000361298.4:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.250C>T
  hgvsp: ENST00000372645.3:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.220C>T
  hgvsp: ENST00000372634.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu84Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-102632675-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632675
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632675
    reference: chr 0
allele count: 1
allele frequency: 1.146736388239072e-5
allele num: 87204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.256T>C
  hgvsp: ENST00000372645.3:c.256T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.256T>C
  hgvsp: ENST00000299872.7:c.256T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.226T>C
  hgvsp: ENST00000361298.4:c.226T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.256T>C
  hgvsp: ENST00000372635.1:c.256T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.226T>C
  hgvsp: ENST00000372634.1:c.226T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1020
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu86Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

X-102632710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632710
    reference: chr 0
allele count: 17
allele frequency: 1.994439034691507e-4
allele num: 85237
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.261C>T
  hgvsp: ENST00000361298.4:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.261C>T
  hgvsp: ENST00000372634.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.291C>T
  hgvsp: ENST00000372645.3:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.291C>T
  hgvsp: ENST00000299872.7:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.291C>T
  hgvsp: ENST00000372635.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu97Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

X-102632712-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632712
    reference: chr 0
allele count: 1
allele frequency: 1.174218850909432e-5
allele num: 85163
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.263C>G
  hgvsp: ENSP00000354843.4:p.Ser88Cys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.293C>G
  hgvsp: ENSP00000361718.1:p.Ser98Cys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.293C>G
  hgvsp: ENSP00000299872.7:p.Ser98Cys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.293C>G
  hgvsp: ENSP00000361728.3:p.Ser98Cys
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.263C>G
  hgvsp: ENSP00000361717.1:p.Ser88Cys
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser98Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

X-102632714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632714
    reference: chr 0
allele count: 31
allele frequency: 3.648045941843087e-4
allele num: 84977
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.265A>G
  hgvsp: ENSP00000354843.4:p.Asn89Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.295A>G
  hgvsp: ENSP00000361718.1:p.Asn99Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.265A>G
  hgvsp: ENSP00000361717.1:p.Asn89Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.295A>G
  hgvsp: ENSP00000299872.7:p.Asn99Asp
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.295A>G
  hgvsp: ENSP00000361728.3:p.Asn99Asp
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7653
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn99Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-102632734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24102632734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24102632734
    reference: chr 0
allele count: 1
allele frequency: 1.195671668559813e-5
allele num: 83635
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361728
  ensembl transcript: ENST00000372645
  gene symbol: NGFRAP1
  hgvsc: ENST00000372645.3:c.315T>C
  hgvsp: ENST00000372645.3:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000354843
  ensembl transcript: ENST00000361298
  gene symbol: NGFRAP1
  hgvsc: ENST00000361298.4:c.285T>C
  hgvsp: ENST00000361298.4:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361717
  ensembl transcript: ENST00000372634
  gene symbol: NGFRAP1
  hgvsc: ENST00000372634.1:c.285T>C
  hgvsp: ENST00000372634.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000299872
  ensembl transcript: ENST00000299872
  gene symbol: NGFRAP1
  hgvsc: ENST00000299872.7:c.315T>C
  hgvsp: ENST00000299872.7:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166681
  ensembl protein: ENSP00000361718
  ensembl transcript: ENST00000372635
  gene symbol: NGFRAP1
  hgvsc: ENST00000372635.1:c.315T>C
  hgvsp: ENST00000372635.1:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13388
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp105Asp
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3361
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.220197076061055e-5
allele num: 31054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4277
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6367
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

DP
type: SiteQuality
SIO_000300: 1.111852e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 481
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4786
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.804655728509325e-4
allele num: 7131
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7237
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34307
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.588e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 1.188656e6

FS
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7227
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7327
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.769e1

QD
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 1.208302e6

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 1.394e0

VQSLOD
type: SiteQuality
SIO_000300: -2.417e0

Other
type: Population
allele count: 1
allele frequency: 1.876172607879925e-3
allele num: 533
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39093
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8011
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7631
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.304083e6

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.541554414680018e-5
allele num: 39346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

African
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allele frequency: 0.0e0
allele num: 7708
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Latino
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allele frequency: 0.0e0
allele num: 8136
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4030
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.501688639831887e-5
allele num: 39973
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Other
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East Asian
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QD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 576
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
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MQ
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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Other
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46790
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South Asian
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Other
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 1.43386306607719e-3
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East Asian
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 1.196029183112068e-4
allele num: 8361
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

Latino
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allele frequency: 0.0e0
allele num: 9291
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.0994730322689e-5
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.826e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47757
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African
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East Asian
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allele count: 0
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South Asian
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allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
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Other
type: Population
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QD
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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allele count: 3
allele frequency: 6.257952815035774e-5
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Other
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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East Asian
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FS
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQ
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQRankSum
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MQ
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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East Asian
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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DP
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FS
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MQ
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QD
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VQSLOD
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Latino
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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VQSLOD
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DP
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InbreedingCoeff
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QD
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MQ
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 9945
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.636e0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.716e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.124e0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.568667e6

QD
type: SiteQuality
SIO_000300: 1.223e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8445
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9567
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.092619331617386e-5
allele num: 47787
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FS
type: SiteQuality
SIO_000300: 7.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.985e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.551407e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.907e0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47746
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African
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allele count: 1
allele frequency: 1.18427285646613e-4
allele num: 8444
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
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Other
type: Population
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allele frequency: 0.0e0
allele num: 622
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e0

FS
type: SiteQuality
SIO_000300: 3.577e0

DP
type: SiteQuality
SIO_000300: 1.548541e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

QD
type: SiteQuality
SIO_000300: 1.718e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

Latino
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allele count: 1
allele frequency: 1.075268817204301e-4
allele num: 9300
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Other
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8438
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.713e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.539331e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.229e0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8431
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47592
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South Asian
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allele count: 0
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allele num: 9209
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East Asian
type: Population
allele count: 2
allele frequency: 3.01568154402895e-4
allele num: 6632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
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VQSLOD
type: SiteQuality
SIO_000300: -1.605e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

DP
type: SiteQuality
SIO_000300: 1.536518e6

QD
type: SiteQuality
SIO_000300: 2.161e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

FS
type: SiteQuality
SIO_000300: 6.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.205921938088829e-5
allele num: 47552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
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DP
type: SiteQuality
SIO_000300: 1.532282e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.521e0

FS
type: SiteQuality
SIO_000300: 7.518e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106283042315226e-5
allele num: 47477
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

DP
type: SiteQuality
SIO_000300: 1.527203e6

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 2.308e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.108236881496005e-5
allele num: 47433
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.524607e6

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

FS
type: SiteQuality
SIO_000300: 2.551e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 606
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8311
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.490427e6

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46794
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8311
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.490427e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.15954735887358e-5
allele num: 46306
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.42e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

DP
type: SiteQuality
SIO_000300: 1.464792e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7740
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8155
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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allele num: 596
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East Asian
type: Population
allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4279
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7617
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5989
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.380215647537667e-5
allele num: 42013
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.707e1

VQSLOD
type: SiteQuality
SIO_000300: -2.628e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.249029e6

MQRankSum
type: SiteQuality
SIO_000300: -1.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8577
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 5245
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African
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allele count: 1
allele frequency: 1.332977872567315e-4
allele num: 7502
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.721e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.64e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.399e1

DP
type: SiteQuality
SIO_000300: 1.207334e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5109
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.451100544144321e-5
allele num: 40798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4201
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -3.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.185939e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.908e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 503
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39465
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4139
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.454e1

MQRankSum
type: SiteQuality
SIO_000300: -3.344e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.121e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 1.119759e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4087
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 487
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38417
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

DP
type: SiteQuality
SIO_000300: 1.070432e6

FS
type: SiteQuality
SIO_000300: 2.453e0

VQSLOD
type: SiteQuality
SIO_000300: -1.307e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5251
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4111
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.805e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

DP
type: SiteQuality
SIO_000300: 1.028872e6

VQSLOD
type: SiteQuality
SIO_000300: -1.776e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8035
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6997
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5179
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.116e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

DP
type: SiteQuality
SIO_000300: 1.010909e6

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3691
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.683265535138168e-4
allele num: 35645
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.871e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.61579e5

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 2.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.186700487634209e-5
allele num: 45731
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.246631e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.077e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 1347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17859
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2535
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.182262569832402e-5
allele num: 45824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.364e0

DP
type: SiteQuality
SIO_000300: 2.256365e6

VQSLOD
type: SiteQuality
SIO_000300: -3.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 3.417e1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.586797841954935e-4
allele num: 6302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.256e1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.273029e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7921
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46051
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.988e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 2.27452e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

GenotypeQuality
all individuals: 2758
bin: 2.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1033
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1087
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 2.75e1
variant carriers: 22

East Asian
type: Population
allele count: 4
allele frequency: 7.187780772686433e-4
allele num: 5565
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 7.138637258763292e-4
allele num: 40624
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.827018752391887e-4
allele num: 7839
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.294591484464902e-3
allele num: 6952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4225
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 7.51730959446093e-3
allele num: 5055
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.008032128514056e-3
allele num: 498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 2.818899e6

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 978
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 955
bin: 1.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1085
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7339
bin: 9.75e1
variant carriers: 159

Latino
type: Population
allele count: 4
allele frequency: 5.102691669855849e-4
allele num: 7839
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.078167115902965e-3
allele num: 5565
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.582278481012658e-3
allele num: 6952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4225
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.582591493570722e-3
allele num: 5055
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 157
allele frequency: 3.864710515951162e-3
allele num: 40624
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.016064257028112e-3
allele num: 498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

DP
type: SiteQuality
SIO_000300: 2.818899e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8239
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.461235540241201e-5
allele num: 40630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.73e0

DP
type: SiteQuality
SIO_000300: 2.40243e6

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

FS
type: SiteQuality
SIO_000300: 9.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7738
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8000
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7371
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 9.848578111535148e-4
allele num: 8123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

DP
type: SiteQuality
SIO_000300: 1.949215e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

QD
type: SiteQuality
SIO_000300: 1.503e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.387e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 8006
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.155636990730761e-4
allele num: 9278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.093e1

DP
type: SiteQuality
SIO_000300: 1.951927e6

VQSLOD
type: SiteQuality
SIO_000300: -2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.891e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.944e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8209
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.41598586884522e-4
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.138397057565649e-5
allele num: 46764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: -3.25e0

QD
type: SiteQuality
SIO_000300: 2.433e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.57e0

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

DP
type: SiteQuality
SIO_000300: 1.954295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.774e0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.137391527379986e-5
allele num: 46786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7463
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8219
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.955379e6

VQSLOD
type: SiteQuality
SIO_000300: -3.006e-1

QD
type: SiteQuality
SIO_000300: 3.167e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7730
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9093
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.523e0

VQSLOD
type: SiteQuality
SIO_000300: -3.258e0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

QD
type: SiteQuality
SIO_000300: 3.131e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 2.001641e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47619
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.002569e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47963
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10075
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.031873e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

MQ
type: SiteQuality
SIO_000300: 5.793e1

VQSLOD
type: SiteQuality
SIO_000300: -1.636e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.227e0

FS
type: SiteQuality
SIO_000300: 1.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.894e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.889240506329114e-5
allele num: 10112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.509e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

DP
type: SiteQuality
SIO_000300: 2.033847e6

QD
type: SiteQuality
SIO_000300: 3.389e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.168056018672891e-5
allele num: 47984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.348e-1

DP
type: SiteQuality
SIO_000300: 2.034268e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.558e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2497
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083984578514119e-5
allele num: 47985
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.737e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.57e-1

DP
type: SiteQuality
SIO_000300: 2.034024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.657e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.843e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.034237e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174674027957242e-4
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47985
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.199e0

DP
type: SiteQuality
SIO_000300: 2.034451e6

FS
type: SiteQuality
SIO_000300: 1.783e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
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allele num: 9320
num of homozygotes: 0

Other
type: Population
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South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
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MQ
type: SiteQuality
SIO_000300: 5.775e1

FS
type: SiteQuality
SIO_000300: 1.332e0

QD
type: SiteQuality
SIO_000300: 2.827e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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SIO_000300: 7.02e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167274394182485e-5
allele num: 47993
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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East Asian
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allele count: 0
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African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

FS
type: SiteQuality
SIO_000300: 3.273e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 2.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10124
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European (Finnish)
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allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47993
num of homozygotes: 0

Other
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allele num: 633
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East Asian
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allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
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BaseQRankSum
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QD
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele frequency: 2.083637197091242e-5
allele num: 47993
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 7.902015013828526e-4
allele num: 10124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
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SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 2.496e0

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 1.174398120963006e-4
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47994
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Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.974e1

MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.224e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.250651109490572e-5
allele num: 47995
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.027543e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.384e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.174398120963006e-4
allele num: 8515
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.679e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 2.027453e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
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allele num: 10123
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
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allele num: 633
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East Asian
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allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47994
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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QD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 47991
num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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BaseQRankSum
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VQSLOD
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 9323
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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African
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Other
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QD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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MQ
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QD
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InbreedingCoeff
type: SiteQuality
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FS
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Other
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East Asian
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South Asian
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Latino
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African
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.323e1

DP
type: SiteQuality
SIO_000300: 2.010357e6

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075268817204301e-4
allele num: 9300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.164757263117919e-4
allele num: 47397
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.731e1

DP
type: SiteQuality
SIO_000300: 1.967088e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8247
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110773387369132e-5
allele num: 47376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.964561e6

QD
type: SiteQuality
SIO_000300: 3.315e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 29362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8129
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47317
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 4.682779456193354e-3
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.644e1

DP
type: SiteQuality
SIO_000300: 1.962657e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: 6.46e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
all individuals: 1165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7622
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.941239e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.07e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3