X-20071060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071060
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071060
    reference: chr 0
allele count: 3
allele frequency: 3.418842379970142e-5
allele num: 87749
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.531G>A
  hgvsp: ENST00000379651.3:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.399G>A
  hgvsp: ENST00000452324.3:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.210G>A
  hgvsp: ENST00000543767.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.531G>A
  hgvsp: ENST00000379643.5:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3738G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.433G>A
  hgvsp: ENST00000485173.1:c.433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15614
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genotype depth: GenotypeDepth
  all individuals: 2842
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 577
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genotype depth: GenotypeDepth
  all individuals: 279
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1662
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr177Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

X-20071062-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071062
    reference: chr 0
allele count: 2
allele frequency: 2.279306179199052e-5
allele num: 87746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.397A>G
  hgvsp: ENSP00000413301.3:p.Thr133Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.208A>G
  hgvsp: ENSP00000440691.1:p.Thr70Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3736A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.529A>G
  hgvsp: ENSP00000368972.3:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.431A>G
  hgvsp: ENSP00000450876.1:p.Thr145Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.529A>G
  hgvsp: ENSP00000368964.5:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 470
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genotype depth: GenotypeDepth
  all individuals: 250
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
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  variant carriers: 1
hgvs: p.Thr177Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-20071067-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071067
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071067
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.524A>T
  hgvsp: ENSP00000368964.5:p.Lys175Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.392A>T
  hgvsp: ENSP00000413301.3:p.Lys131Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.203A>T
  hgvsp: ENSP00000440691.1:p.Lys68Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3731A>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.426A>T
  hgvsp: ENSP00000450876.1:p.Lys143Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.524A>T
  hgvsp: ENSP00000368972.3:p.Lys175Met
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Lys175Met
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS

X-20071068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071068
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071068
    reference: chr 0
allele count: 7
allele frequency: 7.977935310341684e-5
allele num: 87742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.391A>G
  hgvsp: ENSP00000413301.3:p.Lys131Glu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.523A>G
  hgvsp: ENSP00000368972.3:p.Lys175Glu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.202A>G
  hgvsp: ENSP00000440691.1:p.Lys68Glu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.425A>G
  hgvsp: ENSP00000450876.1:p.Lys143Glu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3730A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.523A>G
  hgvsp: ENSP00000368964.5:p.Lys175Glu
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys175Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

X-20071074-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071074
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071074
    reference: chr 0
allele count: 1
allele frequency: 1.139782985319595e-5
allele num: 87736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.419T>A
  hgvsp: ENSP00000450876.1:p.Leu141Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3724T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.385T>A
  hgvsp: ENSP00000413301.3:p.Leu129Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.517T>A
  hgvsp: ENSP00000368964.5:p.Leu173Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.517T>A
  hgvsp: ENSP00000368972.3:p.Leu173Met
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.196T>A
  hgvsp: ENSP00000440691.1:p.Leu66Met
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu173Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

X-20071075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071075
    reference: chr 0
allele count: 1
allele frequency: 1.139769994415127e-5
allele num: 87737
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3723T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.516T>C
  hgvsp: ENST00000379643.5:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.516T>C
  hgvsp: ENST00000379651.3:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.195T>C
  hgvsp: ENST00000543767.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.384T>C
  hgvsp: ENST00000452324.3:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.418T>C
  hgvsp: ENST00000485173.1:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10473
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 33130
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser172Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

X-20071079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071079
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071079
    reference: chr 0
allele count: 12
allele frequency: 1.36786430786066e-4
allele num: 87728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3719T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.512T>C
  hgvsp: ENSP00000368972.3:p.Met171Thr
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.414T>C
  hgvsp: ENSP00000450876.1:p.Met139Thr
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.380T>C
  hgvsp: ENSP00000413301.3:p.Met127Thr
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.191T>C
  hgvsp: ENSP00000440691.1:p.Met64Thr
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.512T>C
  hgvsp: ENSP00000368964.5:p.Met171Thr
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15542
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
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genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6903
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 994
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met171Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-20071082-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071082
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071082
    reference: chr 0
allele count: 1
allele frequency: 1.14009485589201e-5
allele num: 87712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.188C>A
  hgvsp: ENSP00000440691.1:p.Thr63Asn
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.509C>A
  hgvsp: ENSP00000368972.3:p.Thr170Asn
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.509C>A
  hgvsp: ENSP00000368964.5:p.Thr170Asn
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.377C>A
  hgvsp: ENSP00000413301.3:p.Thr126Asn
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.411C>A
  hgvsp: ENSP00000450876.1:p.Thr138Asn
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3716C>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33056
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr170Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-20071083-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071083
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071083
    reference: chr 0
allele count: 1
allele frequency: 1.14009485589201e-5
allele num: 87712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3715A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.376A>G
  hgvsp: ENSP00000413301.3:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.187A>G
  hgvsp: ENSP00000440691.1:p.Thr63Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.508A>G
  hgvsp: ENSP00000368972.3:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.410A>G
  hgvsp: ENSP00000450876.1:p.Thr138Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.508A>G
  hgvsp: ENSP00000368964.5:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1152
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 575
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 467
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr170Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-20071089-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071089
    reference: chr 0
allele count: 1
allele frequency: 1.140615019618578e-5
allele num: 87672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.404A>G
  hgvsp: ENSP00000450876.1:p.Thr136Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.502A>G
  hgvsp: ENSP00000368964.5:p.Thr168Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.181A>G
  hgvsp: ENSP00000440691.1:p.Thr61Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.370A>G
  hgvsp: ENSP00000413301.3:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.502A>G
  hgvsp: ENSP00000368972.3:p.Thr168Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3709A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15420
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 575
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 467
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9672
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 278
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genotype depth: GenotypeDepth
  all individuals: 324
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genotype quality: GenotypeQuality
  all individuals: 37
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Thr168Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-20071096-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071096
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071096
    reference: chr 0
allele count: 1
allele frequency: 1.14148735802751e-5
allele num: 87605
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.495A>G
  hgvsp: ENST00000379643.5:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3702A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.397A>G
  hgvsp: ENST00000485173.1:c.397A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.495A>G
  hgvsp: ENST00000379651.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.174A>G
  hgvsp: ENST00000543767.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.363A>G
  hgvsp: ENST00000452324.3:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2257
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9645
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys165Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

X-20071097-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071097
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071097
    reference: chr 0
allele count: 1
allele frequency: 1.141891428962934e-5
allele num: 87574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.362A>G
  hgvsp: ENSP00000413301.3:p.Lys121Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.494A>G
  hgvsp: ENSP00000368972.3:p.Lys165Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.173A>G
  hgvsp: ENSP00000440691.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3701A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.494A>G
  hgvsp: ENSP00000368964.5:p.Lys165Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.396A>G
  hgvsp: ENSP00000450876.1:p.Lys133Arg
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys165Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-20071100-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071100
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071100
    reference: chr 0
allele count: 1
allele frequency: 1.142595978062157e-5
allele num: 87520
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.491A>T
  hgvsp: ENSP00000368964.5:p.Asp164Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.491A>T
  hgvsp: ENSP00000368972.3:p.Asp164Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3698A>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.170A>T
  hgvsp: ENSP00000440691.1:p.Asp57Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
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  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.393A>T
  hgvsp: ENSP00000450876.1:p.Asp132Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
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  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.359A>T
  hgvsp: ENSP00000413301.3:p.Asp120Val
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4686
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
hgvs: p.Asp164Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-20071112-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071112
    reference: chr 0
allele count: 25
allele frequency: 2.872143653136955e-4
allele num: 87043
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.353-6C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.164-6C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.387-6C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.485-6C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.485-6C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3686C>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 265
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2823
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  variant carriers: 0
hgvs: c.485-6C>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-20071120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071120
    reference: chr 0
allele count: 1
allele frequency: 1.157072606306046e-5
allele num: 86425
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.387-14G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.485-14G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3678G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.485-14G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.164-14G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.353-14G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

X-20071122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071122
    reference: chr 0
allele count: 2
allele frequency: 2.313931021716243e-5
allele num: 86433
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3676A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.164-16A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.353-16A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.485-16A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.485-16A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.387-16A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-20071128-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071128
    reference: chr 0
allele count: 4
allele frequency: 4.642148386273167e-5
allele num: 86167
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.353-22T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.485-22T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.164-22T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.485-22T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3670T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.387-22T>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1953
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  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-20071131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020071131
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020071131
    reference: chr 0
allele count: 4
allele frequency: 4.651649591236292e-5
allele num: 85991
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.164-25A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.485-25A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.485-25A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+3667A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.387-25A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.353-25A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-20073825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073825
    reference: chr 0
allele count: 1
allele frequency: 3.097221792052529e-5
allele num: 32287
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+973G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+973G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.163+27G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+973G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+973G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.386+27G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4775
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-20073830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073830
    reference: chr 0
allele count: 3
allele frequency: 8.925383791503035e-5
allele num: 33612
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+968C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+968C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+968C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.386+22C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+968C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.163+22C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26312
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

X-20073837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073837
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 36624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+961C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+961C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.163+15C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+961C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+961C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.386+15C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-20073842-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073842
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 38907
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+956A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.163+10A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+956A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.386+10A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+956A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+956A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 865
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12939
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genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-20073844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073844
    reference: chr 0
allele count: 2
allele frequency: 4.981940465811433e-5
allele num: 40145
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+954C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.386+8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.163+8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+954C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+954C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+954C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 263
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genotype quality: GenotypeQuality
  all individuals: 403
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
hgvs: c.386+8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

X-20073855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073855
    reference: chr 0
allele count: 1
allele frequency: 2.192021043402017e-5
allele num: 45620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.160A>G
  hgvsp: ENSP00000440691.1:p.Asn54Asp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.383A>G
  hgvsp: ENSP00000450876.1:p.Asn129Asp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+943A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+943A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+943A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+943A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn129Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum

X-20073856-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073856
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073856
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45935
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+942C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+942C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.159C>G
  hgvsp: ENST00000543767.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.382C>G
  hgvsp: ENST00000485173.1:c.382C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+942C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+942C>G
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25308
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Thr128Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-20073864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073864
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073864
    reference: chr 0
allele count: 3
allele frequency: 6.30305067652744e-5
allele num: 47596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+934G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+934G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.374G>A
  hgvsp: ENSP00000450876.1:p.Glu126Lys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+934G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.151G>A
  hgvsp: ENSP00000440691.1:p.Glu51Lys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+934G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23948
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 15884
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23234
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu126Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

X-20073865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073865
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073865
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 48240
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+933C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+933C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+933C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.150C>T
  hgvsp: ENST00000543767.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.373C>T
  hgvsp: ENST00000485173.1:c.373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+933C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala125Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-20073865-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073865
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073865
    reference: chr 0
allele count: 4
allele frequency: 8.291873963515754e-5
allele num: 48240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.150C>G
  hgvsp: ENST00000543767.1:c.150C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+933C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.373C>G
  hgvsp: ENST00000485173.1:c.373C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+933C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+933C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+933C>G
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4897
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala125Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

X-20073892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073892
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073892
    reference: chr 0
allele count: 7
allele frequency: 1.320331214516099e-4
allele num: 53017
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.346G>A
  hgvsp: ENST00000485173.1:c.346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+906G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.123G>A
  hgvsp: ENST00000543767.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+906G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+906G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+906G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21634
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 106
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro116Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

X-20073893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073893
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073893
    reference: chr 0
allele count: 1
allele frequency: 1.884197237766849e-5
allele num: 53073
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.345C>T
  hgvsp: ENSP00000450876.1:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+905C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.122C>T
  hgvsp: ENSP00000440691.1:p.Pro41Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+905C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+905C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+905C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 19735
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 512
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro116Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-20073906-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073906
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073906
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 53855
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.109A>T
  hgvsp: ENSP00000440691.1:p.Ser37Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+892A>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.332A>T
  hgvsp: ENSP00000450876.1:p.Ser112Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+892A>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+892A>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+892A>T
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser112Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS

X-20073919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073919
    reference: chr 0
allele count: 7
allele frequency: 1.333460329555196e-4
allele num: 52495
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+879A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.319A>G
  hgvsp: ENST00000485173.1:c.319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+879A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+879A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-2A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+879A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14782
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 1
hgvs: c.98-2A>G
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-20073932-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073932
    reference: chr 0
allele count: 4
allele frequency: 7.897490572370629e-5
allele num: 50649
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+866C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.306C>G
  hgvsp: ENSP00000450876.1:p.Pro103Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+866C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+866C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-15C>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+866C>G
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro103Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-20073949-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073949
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073949
    reference: chr 0
allele count: 1
allele frequency: 2.123683316343867e-5
allele num: 47088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+849T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+849T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.289T>A
  hgvsp: ENST00000485173.1:c.289T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-32T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+849T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+849T>A
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
hgvs: c.289T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-20073950-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073950
    reference: chr 0
allele count: 1
allele frequency: 2.128202945432876e-5
allele num: 46988
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+848G>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+848G>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+848G>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-33G>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.288G>C
  hgvsp: ENSP00000450876.1:p.Gly97Ala
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+848G>C
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7061
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly97Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

X-20073958-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073958
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 44346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-41C>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+840C>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.288-8C>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+840C>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+840C>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+840C>A
  variant of: http://identifiers.org/hgnc/25899
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.75e1
  variant carriers: 0
hgvs: c.288-8C>A
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-20073960-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073960
    reference: chr 0
allele count: 16
allele frequency: 3.708081299682496e-4
allele num: 43149
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+838T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+838T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+838T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.288-10T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+838T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-43T>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19840
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 523
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genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 182
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1519
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genotype quality: GenotypeQuality
  all individuals: 1086
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  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-20073971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073971
    reference: chr 0
allele count: 40
allele frequency: 1.078835936025029e-3
allele num: 37077
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.288-21C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+827C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+827C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+827C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-54C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+827C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 35
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 95
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  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

X-20073983-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020073983
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020073983
    reference: chr 0
allele count: 3
allele frequency: 1.09705258538726e-4
allele num: 27346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+815T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+815T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+815T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.98-66T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+815T>C
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.288-33T>C
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19148
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2716
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

X-20074752-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074753
    reference: chr 0
allele count: 1
allele frequency: 1.20644725412605e-5
allele num: 82888
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.287+45dupT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+45dupT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+45dupT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
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  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+45dupT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
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  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.97+45dupT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
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  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+45dupT
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 583
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-20074762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074762
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074762
    reference: chr 0
allele count: 2
allele frequency: 2.406651986089551e-5
allele num: 83103
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+36G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+36G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+36G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.287+36G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
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  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.97+36G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+36G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-20074763-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074763
    reference: chr 0
allele count: 1
allele frequency: 1.202298795296607e-5
allele num: 83174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.287+35G>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.97+35G>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+35G>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+35G>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+35G>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+35G>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

X-20074763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074763
    reference: chr 0
allele count: 1
allele frequency: 1.202298795296607e-5
allele num: 83174
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+35G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.97+35G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000413301
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  gene symbol: MAP7D2
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  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
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  ensembl protein: ENSP00000388239
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  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+35G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
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  ensembl protein: ENSP00000450876
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  gene symbol: MAP7D2
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  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
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  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+35G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

X-20074777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074777
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074777
    reference: chr 0
allele count: 1
allele frequency: 1.18515709257262e-5
allele num: 84377
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.352+21G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.484+21G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.97+21G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.484+21G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.484+21G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.287+21G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 6408
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3936
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-20074802-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074802
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074802
    reference: chr 0
allele count: 1
allele frequency: 1.154294552884005e-5
allele num: 86633
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.480T>G
  hgvsp: ENSP00000388239.3:p.His160Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.348T>G
  hgvsp: ENSP00000413301.3:p.His116Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.480T>G
  hgvsp: ENSP00000368964.5:p.His160Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.480T>G
  hgvsp: ENSP00000368972.3:p.His160Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.93T>G
  hgvsp: ENSP00000440691.1:p.His31Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.283T>G
  hgvsp: ENSP00000450876.1:p.His95Gln
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45514
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His160Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-20074803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074803
    reference: chr 0
allele count: 9
allele frequency: 1.038469526688667e-4
allele num: 86666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.479A>G
  hgvsp: ENSP00000368972.3:p.His160Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.347A>G
  hgvsp: ENSP00000413301.3:p.His116Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.92A>G
  hgvsp: ENSP00000440691.1:p.His31Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.479A>G
  hgvsp: ENSP00000368964.5:p.His160Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.479A>G
  hgvsp: ENSP00000388239.3:p.His160Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.282A>G
  hgvsp: ENSP00000450876.1:p.His95Arg
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1553
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hgvs: p.His160Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

X-20074810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074810
    reference: chr 0
allele count: 6
allele frequency: 6.899089320209733e-5
allele num: 86968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.472G>A
  hgvsp: ENSP00000368972.3:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.275G>A
  hgvsp: ENSP00000450876.1:p.Gly93Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.85G>A
  hgvsp: ENSP00000440691.1:p.Gly29Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.340G>A
  hgvsp: ENSP00000413301.3:p.Gly114Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.472G>A
  hgvsp: ENSP00000388239.3:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.472G>A
  hgvsp: ENSP00000368964.5:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 46132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly158Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-20074811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074811
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074811
    reference: chr 0
allele count: 753
allele frequency: 8.652586583319927e-3
allele num: 87026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.471C>T
  hgvsp: ENST00000379651.3:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.84C>T
  hgvsp: ENST00000543767.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.471C>T
  hgvsp: ENST00000443379.3:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.339C>T
  hgvsp: ENST00000452324.3:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.471C>T
  hgvsp: ENST00000379643.5:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.274C>T
  hgvsp: ENST00000485173.1:c.274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29368
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 19184
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 9.75e1
  variant carriers: 662
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Pro157Pro
num of homozygotes: 31
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-20074812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074812
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074812
    reference: chr 0
allele count: 34
allele frequency: 3.904276330898902e-4
allele num: 87084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.83C>T
  hgvsp: ENSP00000440691.1:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.470C>T
  hgvsp: ENSP00000388239.3:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.470C>T
  hgvsp: ENSP00000368972.3:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.338C>T
  hgvsp: ENSP00000413301.3:p.Pro113Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.470C>T
  hgvsp: ENSP00000368964.5:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.273C>T
  hgvsp: ENSP00000450876.1:p.Pro92Leu
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro157Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-20074814-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074814
    reference: chr 0
allele count: 1
allele frequency: 1.147591778652498e-5
allele num: 87139
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.468A>G
  hgvsp: ENST00000379643.5:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.81A>G
  hgvsp: ENST00000543767.1:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.336A>G
  hgvsp: ENST00000452324.3:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.271A>G
  hgvsp: ENST00000485173.1:c.271A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.468A>G
  hgvsp: ENST00000379651.3:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.468A>G
  hgvsp: ENST00000443379.3:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly156Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-20074815-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074815
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074815
    reference: chr 0
allele count: 3
allele frequency: 3.441590473677569e-5
allele num: 87169
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.467G>T
  hgvsp: ENSP00000388239.3:p.Gly156Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.335G>T
  hgvsp: ENSP00000413301.3:p.Gly112Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.467G>T
  hgvsp: ENSP00000368972.3:p.Gly156Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.80G>T
  hgvsp: ENSP00000440691.1:p.Gly27Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.270G>T
  hgvsp: ENSP00000450876.1:p.Gly91Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.467G>T
  hgvsp: ENSP00000368964.5:p.Gly156Val
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly156Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-20074827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074827
    reference: chr 0
allele count: 1
allele frequency: 1.145213009619789e-5
allele num: 87320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.258C>T
  hgvsp: ENSP00000450876.1:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.68C>T
  hgvsp: ENSP00000440691.1:p.Pro23Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.323C>T
  hgvsp: ENSP00000413301.3:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.455C>T
  hgvsp: ENSP00000368964.5:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.455C>T
  hgvsp: ENSP00000388239.3:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.455C>T
  hgvsp: ENSP00000368972.3:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
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genotype depth: GenotypeDepth
  all individuals: 417
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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genotype depth: GenotypeDepth
  all individuals: 19825
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 29555
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genotype depth: GenotypeDepth
  all individuals: 422
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genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
  all individuals: 116
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genotype depth: GenotypeDepth
  all individuals: 32
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genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
  all individuals: 178
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genotype depth: GenotypeDepth
  all individuals: 49
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genotype quality: GenotypeQuality
  all individuals: 268
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genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 6987
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genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 1355
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro152Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-20074830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074830
    reference: chr 0
allele count: 2
allele frequency: 2.28948211914465e-5
allele num: 87356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.452C>T
  hgvsp: ENSP00000368972.3:p.Ala151Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.255C>T
  hgvsp: ENSP00000450876.1:p.Ala86Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.452C>T
  hgvsp: ENSP00000368964.5:p.Ala151Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.65C>T
  hgvsp: ENSP00000440691.1:p.Ala22Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.452C>T
  hgvsp: ENSP00000388239.3:p.Ala151Val
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.320C>T
  hgvsp: ENSP00000413301.3:p.Ala107Val
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
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genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29528
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 19887
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genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
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genotype quality: GenotypeQuality
  all individuals: 722
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala151Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-20074831-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074831
    reference: chr 0
allele count: 1
allele frequency: 1.1446755417177e-5
allele num: 87361
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.319G>T
  hgvsp: ENSP00000413301.3:p.Ala107Ser
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.64G>T
  hgvsp: ENSP00000440691.1:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.451G>T
  hgvsp: ENSP00000368972.3:p.Ala151Ser
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.451G>T
  hgvsp: ENSP00000368964.5:p.Ala151Ser
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.451G>T
  hgvsp: ENSP00000388239.3:p.Ala151Ser
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.254G>T
  hgvsp: ENSP00000450876.1:p.Ala86Ser
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
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genotype depth: GenotypeDepth
  all individuals: 1599
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 148
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genotype depth: GenotypeDepth
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 1459
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 344
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 47082
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genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala151Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-20074838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074838
    reference: chr 0
allele count: 1
allele frequency: 1.144505230388903e-5
allele num: 87374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.444G>A
  hgvsp: ENST00000379651.3:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.444G>A
  hgvsp: ENST00000379643.5:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.312G>A
  hgvsp: ENST00000452324.3:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.444G>A
  hgvsp: ENST00000443379.3:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.57G>A
  hgvsp: ENST00000543767.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.247G>A
  hgvsp: ENST00000485173.1:c.247G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser148Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-20074844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074844
    reference: chr 0
allele count: 1
allele frequency: 1.144557628476594e-5
allele num: 87370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.241G>A
  hgvsp: ENST00000485173.1:c.241G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.438G>A
  hgvsp: ENST00000379643.5:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.438G>A
  hgvsp: ENST00000443379.3:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.51G>A
  hgvsp: ENST00000543767.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.438G>A
  hgvsp: ENST00000379651.3:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.306G>A
  hgvsp: ENST00000452324.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys146Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-20074851-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074851
    reference: chr 0
allele count: 2
allele frequency: 2.2895345376285e-5
allele num: 87354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.234A>G
  hgvsp: ENSP00000450876.1:p.Lys79Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.299A>G
  hgvsp: ENSP00000413301.3:p.Lys100Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.431A>G
  hgvsp: ENSP00000368964.5:p.Lys144Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.431A>G
  hgvsp: ENSP00000388239.3:p.Lys144Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.431A>G
  hgvsp: ENSP00000368972.3:p.Lys144Arg
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.44A>G
  hgvsp: ENSP00000440691.1:p.Lys15Arg
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys144Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-20074871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074871
    reference: chr 0
allele count: 1
allele frequency: 1.148145171475481e-5
allele num: 87097
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.411C>T
  hgvsp: ENST00000379643.5:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.24C>T
  hgvsp: ENST00000543767.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.411C>T
  hgvsp: ENST00000379651.3:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.214C>T
  hgvsp: ENST00000485173.1:c.214C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.411C>T
  hgvsp: ENST00000443379.3:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.279C>T
  hgvsp: ENST00000452324.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg137Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-20074872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074872
    reference: chr 0
allele count: 1
allele frequency: 1.148461635639061e-5
allele num: 87073
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.410G>A
  hgvsp: ENSP00000388239.3:p.Arg137His
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.23G>A
  hgvsp: ENSP00000440691.1:p.Arg8His
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.278G>A
  hgvsp: ENSP00000413301.3:p.Arg93His
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.410G>A
  hgvsp: ENSP00000368964.5:p.Arg137His
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.213G>A
  hgvsp: ENSP00000450876.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.410G>A
  hgvsp: ENSP00000368972.3:p.Arg137His
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg137His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-20074885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074885
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074885
    reference: chr 0
allele count: 4
allele frequency: 4.628397533064115e-5
allele num: 86423
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.10C>T
  hgvsp: ENSP00000440691.1:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.397C>T
  hgvsp: ENSP00000368972.3:p.Arg133Trp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.397C>T
  hgvsp: ENSP00000368964.5:p.Arg133Trp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.200C>T
  hgvsp: ENSP00000450876.1:p.Arg68Trp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.397C>T
  hgvsp: ENSP00000388239.3:p.Arg133Trp
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.265C>T
  hgvsp: ENSP00000413301.3:p.Arg89Trp
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
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genotype depth: GenotypeDepth
  all individuals: 32
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 302
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 689
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 2800
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 170
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genotype quality: GenotypeQuality
  all individuals: 1367
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg133Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

X-20074888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074888
    reference: chr 0
allele count: 3
allele frequency: 3.482823873596712e-5
allele num: 86137
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.394C>T
  hgvsp: ENSP00000388239.3:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.394C>T
  hgvsp: ENSP00000368964.5:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.262C>T
  hgvsp: ENSP00000413301.3:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.197C>T
  hgvsp: ENSP00000450876.1:p.Arg67Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.7C>T
  hgvsp: ENSP00000440691.1:p.Arg3Cys
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.394C>T
  hgvsp: ENSP00000368972.3:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1324
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genotype quality: GenotypeQuality
  all individuals: 197
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg132Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

X-20074895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074895
    reference: chr 0
allele count: 1
allele frequency: 1.179008925097563e-5
allele num: 84817
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.387G>A
  hgvsp: ENST00000379643.5:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.387G>A
  hgvsp: ENST00000443379.3:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.387G>A
  hgvsp: ENST00000379651.3:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.255G>A
  hgvsp: ENST00000452324.3:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000440691
  ensembl transcript: ENST00000543767
  gene symbol: MAP7D2
  hgvsc: ENST00000543767.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.190G>A
  hgvsp: ENST00000485173.1:c.190G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala129Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-20074899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074899
    reference: chr 0
allele count: 11
allele frequency: 1.337386018237082e-4
allele num: 82250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.383A>G
  hgvsp: ENSP00000368972.3:p.Glu128Gly
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.383A>G
  hgvsp: ENSP00000388239.3:p.Glu128Gly
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.186A>G
  hgvsp: ENSP00000450876.1:p.Glu63Gly
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.383A>G
  hgvsp: ENSP00000368964.5:p.Glu128Gly
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.251A>G
  hgvsp: ENSP00000413301.3:p.Glu84Gly
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19029
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6727
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22280
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4357
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
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genotype depth: GenotypeDepth
  all individuals: 79
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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genotype quality: GenotypeQuality
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5715
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu128Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

X-20074909-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074909
    reference: chr 0
allele count: 5
allele frequency: 6.005717443005741e-5
allele num: 83254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176G>C
  hgvsp: ENSP00000450876.1:p.Glu60Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373G>C
  hgvsp: ENSP00000368964.5:p.Glu125Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373G>C
  hgvsp: ENSP00000368972.3:p.Glu125Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373G>C
  hgvsp: ENSP00000388239.3:p.Glu125Gln
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241G>C
  hgvsp: ENSP00000413301.3:p.Glu81Gln
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18683
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 559
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genotype quality: GenotypeQuality
  all individuals: 190
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genotype quality: GenotypeQuality
  all individuals: 40
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genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu125Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-20074911-TAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074911
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074909
    reference: chr 0
allele count: 1
allele frequency: 1.210946960523129e-5
allele num: 82580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-4_373-3delGT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-4_176-3delGT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-4_373-3delGT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-4_373-3delGT
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-4_241-3delGT
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18238
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17555
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1251
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1420
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genotype quality: GenotypeQuality
  all individuals: 10713
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  variant carriers: 0
hgvs: c.373-4_373-3delGT
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: TAC
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-20074915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074915
    reference: chr 0
allele count: 4
allele frequency: 4.902862045719188e-5
allele num: 81585
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-6G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-6G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-6G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-6G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-6G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1908
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
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genotype depth: GenotypeDepth
  all individuals: 10432
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5604
  bin: 6.75e1
  variant carriers: 1
hgvs: c.373-6G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

X-20074917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074917
    reference: chr 0
allele count: 1
allele frequency: 1.236904275978082e-5
allele num: 80847
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-8C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-8C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 285
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.373-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-20074920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074920
    reference: chr 0
allele count: 3
allele frequency: 3.738830244644126e-5
allele num: 80239
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-11G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-11G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-11G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-11G>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-11G>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-20074921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074921
    reference: chr 0
allele count: 1
allele frequency: 1.25003125078127e-5
allele num: 79998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-12C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-12C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-12C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-12C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-12C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

X-20074924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074924
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074924
    reference: chr 0
allele count: 1
allele frequency: 1.263088757246972e-5
allele num: 79171
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-15A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-15A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-15A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-15A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
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  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-15A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-20074926-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074926
    reference: chr 0
allele count: 1
allele frequency: 1.269680040629761e-5
allele num: 78760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-17T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-17T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-17T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-17T>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-17T>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-20074934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074934
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 76538
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-25C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-25C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-25C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-25C>T
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-25C>T
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4746
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-20074936-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074936
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074936
    reference: chr 0
allele count: 1
allele frequency: 1.333457789393677e-5
allele num: 74993
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-27A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-27A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-27A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-27A>G
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-27A>G
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5867
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-20074938-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24020074938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24020074938
    reference: chr 0
allele count: 4
allele frequency: 5.326231691078562e-5
allele num: 75100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000450876
  ensembl transcript: ENST00000485173
  gene symbol: MAP7D2
  hgvsc: ENST00000485173.1:c.176-29T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368964
  ensembl transcript: ENST00000379643
  gene symbol: MAP7D2
  hgvsc: ENST00000379643.5:c.373-29T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000413301
  ensembl transcript: ENST00000452324
  gene symbol: MAP7D2
  hgvsc: ENST00000452324.3:c.241-29T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000388239
  ensembl transcript: ENST00000443379
  gene symbol: MAP7D2
  hgvsc: ENST00000443379.3:c.373-29T>A
  variant of: http://identifiers.org/hgnc/25899
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184368
  ensembl protein: ENSP00000368972
  ensembl transcript: ENST00000379651
  gene symbol: MAP7D2
  hgvsc: ENST00000379651.3:c.373-29T>A
  variant of: http://identifiers.org/hgnc/25899
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10487
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.251432619975412e-5
allele num: 47989
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.943e-1

QD
type: SiteQuality
SIO_000300: 2.1e1

DP
type: SiteQuality
SIO_000300: 2.148446e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.292e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 998
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16770859381512e-5
allele num: 47988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.134e-1

DP
type: SiteQuality
SIO_000300: 2.148209e6

VQSLOD
type: SiteQuality
SIO_000300: -1.665e-1

FS
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

MQ
type: SiteQuality
SIO_000300: 5.799e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.97e-1

GenotypeQuality
all individuals: 1661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.882399446585631e-5
allele num: 10119
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.148024e6

QD
type: SiteQuality
SIO_000300: 3.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.593e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.250338633379874e-4
allele num: 47987
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

FS
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.861e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 2.14849e6

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.938e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.058e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 2.147692e6

QD
type: SiteQuality
SIO_000300: 2.477e1

FS
type: SiteQuality
SIO_000300: 7.78e-1

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6906
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47985
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.445e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 2.147658e6

QD
type: SiteQuality
SIO_000300: 1.772e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 2905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10470
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33105
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.250494987599258e-4
allele num: 47981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.104484205875856e-3
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.584786053882726e-3
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

QD
type: SiteQuality
SIO_000300: 1.779e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 1.244e0

DP
type: SiteQuality
SIO_000300: 2.147124e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.212e-1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10461
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-4
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47975
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

FS
type: SiteQuality
SIO_000300: 3.027e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 2.145977e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.892175289346128e-5
allele num: 10109
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

DP
type: SiteQuality
SIO_000300: 2.145886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.78e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 3.293e1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10459
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47959
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.906875371507826e-5
allele num: 10094
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.351e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.316e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.409999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.144064e6

QD
type: SiteQuality
SIO_000300: 3.115e1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10061
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086158339417962e-5
allele num: 47935
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.141323e6

FS
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
all individuals: 6860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10458
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086854900978735e-5
allele num: 47919
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10049
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.233e0

FS
type: SiteQuality
SIO_000300: 1.2933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.104e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 2.140299e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10456
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087726257333138e-5
allele num: 47899
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.283e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 2.137783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.925e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 5.244058481740188e-4
allele num: 47673
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9879
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

DP
type: SiteQuality
SIO_000300: 2.113288e6

QD
type: SiteQuality
SIO_000300: 2.054e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.452e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 1022
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
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variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10446
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111977021690004e-5
allele num: 47349
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.061209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 3.4e1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5884
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variant carriers: 0

GenotypeQuality
all individuals: 2365
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variant carriers: 0

GenotypeQuality
all individuals: 975
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variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.223508045782827e-5
allele num: 47354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.99e0

DP
type: SiteQuality
SIO_000300: 2.059581e6

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

QD
type: SiteQuality
SIO_000300: 1.632e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 1876
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variant carriers: 0

GenotypeQuality
all individuals: 1649
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9717
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.340748779164406e-4
allele num: 9215
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 3.129e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.731e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.801e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.02308e6

GenotypeQuality
all individuals: 1885
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.132658332472363e-4
allele num: 9679
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.992823e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 3.083e1

GenotypeQuality
all individuals: 1904
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.035731530661516e-5
allele num: 16568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5545
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

FS
type: SiteQuality
SIO_000300: 4.114e0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

DP
type: SiteQuality
SIO_000300: 6.09175e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeQuality
all individuals: 394
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3077
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3193
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.097293343087052e-3
allele num: 2734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.094e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.445e1

DP
type: SiteQuality
SIO_000300: 6.36636e5

GenotypeQuality
all individuals: 7979
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11061
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19017
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3529
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1597
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e0

QD
type: SiteQuality
SIO_000300: 1.04e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.273e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

DP
type: SiteQuality
SIO_000300: 6.87269e5

GenotypeQuality
all individuals: 2004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3953
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 7.18831e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

QD
type: SiteQuality
SIO_000300: 3.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.592e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 393
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1741
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4155
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1773
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3693
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.368137420006736e-4
allele num: 5938
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20971
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 267
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 1.458e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

QD
type: SiteQuality
SIO_000300: 6.25e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4137
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.962708537782139e-4
allele num: 5095
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23982
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6183
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 311
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.06121e5

QD
type: SiteQuality
SIO_000300: 3.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24189
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2011
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3929
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4137
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.154e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.771000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.10196e5

QD
type: SiteQuality
SIO_000300: 2.967e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.966857871255577e-5
allele num: 25104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 319
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.576541068894845e-4
allele num: 6343
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4127
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5501
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.248e1

DP
type: SiteQuality
SIO_000300: 8.36695e5

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16762
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25477
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2035
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5607
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 329
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.587e-1

QD
type: SiteQuality
SIO_000300: 6.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.303e0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

DP
type: SiteQuality
SIO_000300: 8.3945e5

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
all individuals: 23575
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GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2035
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 329
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25477
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.133939718209382e-4
allele num: 5607
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 8.3945e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.587e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 6.47e0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 7

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 359
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6293
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.4194464158978e-4
allele num: 28180
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.485645933014354e-4
allele num: 6688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 8.85324e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 1.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 689
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4589
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 353
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.544088460447973e-5
allele num: 28216
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 3.404e1

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 363
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2423
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28617
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.90683e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 4587
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2428
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 6113
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African
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South Asian
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allele frequency: 7.509762691498949e-4
allele num: 6658
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.192692224699705e-5
allele num: 27806
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.54982e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1281
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2383
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
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South Asian
type: Population
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allele frequency: 4.575960951799878e-4
allele num: 6556
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.734966758795847e-5
allele num: 26774
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.48e-1

QD
type: SiteQuality
SIO_000300: 2.249e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

FS
type: SiteQuality
SIO_000300: 5.127e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.11795e5

GenotypeQuality
all individuals: 11592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.04122044857547e-5
allele num: 24745
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 331
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5167
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4085
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4153
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6363
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.38121e5

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.927e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2235
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4079
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.048910842983238e-5
allele num: 24698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.604e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e0

DP
type: SiteQuality
SIO_000300: 7.32124e5

FS
type: SiteQuality
SIO_000300: 2.098e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3891
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6225
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2128
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.094e1

VQSLOD
type: SiteQuality
SIO_000300: -2.996e0

DP
type: SiteQuality
SIO_000300: 6.81181e5

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10809
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 2.436251421146662e-3
allele num: 6157
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3777
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.435966818968194e-5
allele num: 22543
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

DP
type: SiteQuality
SIO_000300: 6.53852e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

FS
type: SiteQuality
SIO_000300: 7.601e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 2.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
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variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 94
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variant carriers: 1

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3697
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.631321370309951e-3
allele num: 1839
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.983293556085919e-4
allele num: 3352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 273
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3071
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 1.890756302521008e-3
allele num: 19040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5805
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 2.242e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 5.56766e5

GenotypeQuality
all individuals: 4624
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
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variant carriers: 0

GenotypeQuality
all individuals: 2260
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2117
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13549
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 207
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2211
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.668934240362812e-4
allele num: 5292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.927e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.64273e5

QD
type: SiteQuality
SIO_000300: 2.818e1

GenotypeQuality
all individuals: 289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
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variant carriers: 0

GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.168397770887091e-5
allele num: 46117
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8319
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9065
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4079
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8253
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e0

DP
type: SiteQuality
SIO_000300: 1.336597e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.049e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30620
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.164361621539727e-5
allele num: 46203
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6493
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8327
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.101442890186144e-4
allele num: 9079
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.405e0

DP
type: SiteQuality
SIO_000300: 1.384624e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.642e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1219
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1215
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.201489847410789e-4
allele num: 8323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46241
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9085
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4103
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.745e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 1.393857e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1219
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variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162582989122207e-5
allele num: 46241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4103
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9085
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8323
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 2.745e0

DP
type: SiteQuality
SIO_000300: 1.393857e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1138
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GenotypeQuality
all individuals: 1387
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variant carriers: 0

GenotypeQuality
all individuals: 397
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GenotypeQuality
all individuals: 1437
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GenotypeQuality
all individuals: 39504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9169
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.154867767640605e-4
allele num: 8659
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46833
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6557
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.475706e6

VQSLOD
type: SiteQuality
SIO_000300: -4.558e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 2.62e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096348161502662e-5
allele num: 47702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.55693e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

QD
type: SiteQuality
SIO_000300: 1.395e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-1

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6773
bin: 6.75e1
variant carriers: 2

South Asian
type: Population
allele count: 9
allele frequency: 9.318699523710913e-4
allele num: 9658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4301
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

FS
type: SiteQuality
SIO_000300: 2.435e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.362e0

QD
type: SiteQuality
SIO_000300: 2.376e1

VQSLOD
type: SiteQuality
SIO_000300: -2.766e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.544e-1

DP
type: SiteQuality
SIO_000300: 1.558351e6

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6791
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 751
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47799
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.546030787805615e-4
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4331
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17813383600377e-4
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.56942e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

FS
type: SiteQuality
SIO_000300: 1.152e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6754
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 46069
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 704
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.690196922414721e-3
allele num: 9293
num of homozygotes: 0

African
type: Population
allele count: 719
allele frequency: 8.468786808009422e-2
allele num: 8490
num of homozygotes: 31

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.464251349203029e-4
allele num: 47806
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.252032520325203e-3
allele num: 615
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.606229e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.561e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 5.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

QD
type: SiteQuality
SIO_000300: 1.718e1

VQSLOD
type: SiteQuality
SIO_000300: 2.719e1

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 46680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.151694459386767e-4
allele num: 9295
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.766478342749529e-3
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9891
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47823
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.655e0

QD
type: SiteQuality
SIO_000300: 1.618e1

VQSLOD
type: SiteQuality
SIO_000300: 9.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.658e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
type: SiteQuality
SIO_000300: 1.567374e6

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17633219621221e-4
allele num: 8501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47833
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4353
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.567184e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.270247674783154e-5
allele num: 47845
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9925
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.568044e6

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

QD
type: SiteQuality
SIO_000300: 1.718e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.119e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10005
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088598341652917e-5
allele num: 47879
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.411e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

DP
type: SiteQuality
SIO_000300: 1.572844e6

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47066
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47883
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.279981760145919e-4
allele num: 4386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508295625942685e-4
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.685999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

QD
type: SiteQuality
SIO_000300: 2.116e1

DP
type: SiteQuality
SIO_000300: 1.573594e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508295625942685e-4
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10031
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
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SIO_000300: -2.692e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.573735e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.088511100436499e-5
allele num: 47881
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.79e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.176055509820064e-4
allele num: 8503
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47878
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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DP
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10031
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4397
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47865
num of homozygotes: 0

African
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allele frequency: 2.352111019640127e-4
allele num: 8503
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
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BaseQRankSum
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SIO_000300: 3.17e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
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SIO_000300: 1.83e0

ReadPosRankSum
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SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9957
num of homozygotes: 0

African
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allele frequency: 1.178828244724744e-4
allele num: 8483
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47754
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

VQSLOD
type: SiteQuality
SIO_000300: -2.628e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.563359e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.43e-1

QD
type: SiteQuality
SIO_000300: 2.89e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076310407921645e-4
allele num: 9291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4365
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47745
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.33e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

DP
type: SiteQuality
SIO_000300: 1.564177e6

VQSLOD
type: SiteQuality
SIO_000300: -3.464e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9249
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.739336492890995e-4
allele num: 8440
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9749
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47463
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.26e-2

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4287
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.113182029500021e-5
allele num: 47322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.519064256418046e-4
allele num: 6583
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.082602576594132e-4
allele num: 9237
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
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DP
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SIO_000300: 1.526045e6

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6513
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4151
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.143530823973249e-5
allele num: 46652
num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.001e1

BaseQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.547474300873218e-4
allele num: 45235
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East Asian
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African
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allele num: 8010
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South Asian
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European (Finnish)
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allele count: 2
allele frequency: 5.523336095001381e-4
allele num: 3621
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.798561151079137e-3
allele num: 556
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 5
allele frequency: 5.570409982174688e-4
allele num: 8976
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45869
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 580
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.206e0

QD
type: SiteQuality
SIO_000300: 3.221e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
SIO_000300: 2.107e0

DP
type: SiteQuality
SIO_000300: 1.429778e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4005
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 577
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9009
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.211387038158692e-4
allele num: 8255
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8859
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 1.401814e6

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 9.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.809e1

GenotypeQuality
all individuals: 1174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8201
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.602991944764096e-4
allele num: 8690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6315
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8931
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.193e0

DP
type: SiteQuality
SIO_000300: 1.361391e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
SIO_000300: 2.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

FS
type: SiteQuality
SIO_000300: 6.197e0

GenotypeQuality
all individuals: 14402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.244316269048634e-5
allele num: 44557
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 559
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6261
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.196e-1

DP
type: SiteQuality
SIO_000300: 1.329513e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 1145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 3.405994550408719e-4
allele num: 8808
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3837
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8127
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44227
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.304198e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 3.121e0

QD
type: SiteQuality
SIO_000300: 2.399e1

GenotypeQuality
all individuals: 1200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26386
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8417
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44105
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.612903225806452e-4
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

DP
type: SiteQuality
SIO_000300: 1.291242e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.756e0

QD
type: SiteQuality
SIO_000300: 1.15e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
all individuals: 1184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8273
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8063
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.146920518408074e-4
allele num: 8719
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 1.253569e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.217433649866082e-4
allele num: 8214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43471
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.230386e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.981000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e0

QD
type: SiteQuality
SIO_000300: 1.01e1

GenotypeQuality
all individuals: 17185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3573
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.239000000000001e0

QD
type: SiteQuality
SIO_000300: 2.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.731e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.131753e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
all individuals: 1175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5841
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3455
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8363
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317002502304754e-4
allele num: 7593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41415
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.187e-1

QD
type: SiteQuality
SIO_000300: 2.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.073032e6