X-19663526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663526
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663526
    reference: chr 0
allele count: 1
allele frequency: 1.14073212187582e-5
allele num: 87663
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.926G>A
  hgvsp: ENSP00000369019.3:p.Arg309Lys
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13450G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.683G>A
  hgvsp: ENSP00000369020.4:p.Arg228Lys
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.794G>A
  hgvsp: ENSP00000380921.3:p.Arg265Lys
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.80G>A
  hgvsp: ENSP00000369039.1:p.Arg27Lys
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.95G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.734G>A
  hgvsp: ENSP00000369049.3:p.Arg245Lys
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.11G>A
  hgvsp: ENSP00000442499.1:p.Arg4Lys
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg265Lys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-19663541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663541
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663541
    reference: chr 0
allele count: 1
allele frequency: 1.140068860159154e-5
allele num: 87714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.65C>T
  hgvsp: ENSP00000369039.1:p.Thr22Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.668C>T
  hgvsp: ENSP00000369020.4:p.Thr223Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.911C>T
  hgvsp: ENSP00000369019.3:p.Thr304Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.719C>T
  hgvsp: ENSP00000369049.3:p.Thr240Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.620C>T
  hgvsp: ENSP00000388766.1:p.Thr207Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.80C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13465C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.779C>T
  hgvsp: ENSP00000380921.3:p.Thr260Ile
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr260Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-19663601-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663601
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663601
    reference: chr 0
allele count: 1
allele frequency: 1.144151668745209e-5
allele num: 87401
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-8C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13525C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-8C>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16626
  bin: 6.25e1
  variant carriers: 0
hgvs: c.727-8C>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-19663602-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663602
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663602
    reference: chr 0
allele count: 1
allele frequency: 1.144308780281271e-5
allele num: 87389
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13526T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-9T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-9T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

X-19663619-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663620
    reference: chr 0
allele count: 1
allele frequency: 1.148039722174387e-5
allele num: 87105
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13544dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-27dupA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-27dupA
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-19663635-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019663635
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019663635
    reference: chr 0
allele count: 1
allele frequency: 1.151370706826477e-5
allele num: 86853
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-13559A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-42A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-42A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-19666122-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666122
    reference: chr 0
allele count: 1
allele frequency: 1.255524306950583e-5
allele num: 79648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16046C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2529C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2529C>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19666125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666125
    reference: chr 0
allele count: 1
allele frequency: 1.255445494833842e-5
allele num: 79653
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16049G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2532G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2532G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

X-19666129-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666129
    reference: chr 0
allele count: 1
allele frequency: 1.254358897167658e-5
allele num: 79722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16053A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2536A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2536A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

X-19666134-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666134
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666134
    reference: chr 0
allele count: 2
allele frequency: 2.507585445974071e-5
allele num: 79758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16058T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2541T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2541T>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43810
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

X-19666141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666141
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666141
    reference: chr 0
allele count: 1
allele frequency: 1.252991517247428e-5
allele num: 79809
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16065C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2548C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2548C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

X-19666142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666142
    reference: chr 0
allele count: 1
allele frequency: 1.252630524100611e-5
allele num: 79832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16066T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2549T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2549T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS

X-19666146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666146
    reference: chr 0
allele count: 3
allele frequency: 3.755539420645452e-5
allele num: 79882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16070T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2553T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2553T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43811
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

X-19666147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666147
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666147
    reference: chr 0
allele count: 4
allele frequency: 5.005819264895441e-5
allele num: 79907
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2554A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16071A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43812
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-19666148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666148
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666148
    reference: chr 0
allele count: 11
allele frequency: 1.376445267530907e-4
allele num: 79916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16072A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2555A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2555A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43813
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

X-19666166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666166
    reference: chr 0
allele count: 1
allele frequency: 1.247458303706199e-5
allele num: 80163
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2573G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16090G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2573G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-19666174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666174
    reference: chr 0
allele count: 1
allele frequency: 1.246944984787271e-5
allele num: 80196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16098G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2581G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2581G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS

X-19666179-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666179
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666177
    reference: chr 0
allele count: 2
allele frequency: 2.493174933619218e-5
allele num: 80219
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2588_-57-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16105_91-16104delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2588_568-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2588_859-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2588_28-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2588_727-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2588_13-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2588_667-2587delAA
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2588_616-2587delAA
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43826
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CTT
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19666186-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666186
    reference: chr 0
allele count: 3
allele frequency: 3.738876841396844e-5
allele num: 80238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16110G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2593G>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2593G>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43827
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

X-19666193-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666193
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666193
    reference: chr 0
allele count: 6
allele frequency: 7.478126480045866e-5
allele num: 80234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2600A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16117A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43827
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-19666208-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019666208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019666208
    reference: chr 0
allele count: 313
allele frequency: 3.900505944221519e-3
allele num: 80246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.859-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.616-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000477102
  gene symbol: SH3KBP1
  hgvsc: ENST00000477102.1:n.28-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.727-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.91-16132A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.13-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000442499
  ensembl transcript: ENST00000541422
  gene symbol: SH3KBP1
  hgvsc: ENST00000541422.1:c.-57-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.667-2615A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.568-2615A>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43865
  bin: 9.75e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19688937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688937
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688937
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13663
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+13004T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+13004T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+13004T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+13004T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+13004T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24793T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+43T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27033
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24735
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

X-19688957-C-CAAAAAAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688967
    reference: chr 0
allele count: 207
allele frequency: 2.081657280772325e-2
allele num: 9944
alternate allele: CAAAAAAAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 9.75e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 4
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

X-19688957-C-CAAAAAAAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688968
    reference: chr 0
allele count: 250
allele frequency: 2.51407884151247e-2
allele num: 9944
alternate allele: CAAAAAAAAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 2
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-19688957-C-CAAAAAAAAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688969
    reference: chr 0
allele count: 173
allele frequency: 1.739742558326629e-2
allele num: 9944
alternate allele: CAAAAAAAAAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 9.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 5
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-19688957-C-CAAAAAAAAAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688970
    reference: chr 0
allele count: 101
allele frequency: 1.015687851971038e-2
allele num: 9944
alternate allele: CAAAAAAAAAAAAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-19688957-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688956
    reference: chr 0
allele count: 2484
allele frequency: 2.49798873692679e-1
allele num: 9944
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12983delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12983delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12983delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12983delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24772delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+22delT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12983delT
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 712
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 780
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 1210
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 593
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 6.75e1
  variant carriers: 226
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 9.75e1
  variant carriers: 1614
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 262
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 285
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CA
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

X-19688957-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688955
    reference: chr 0
allele count: 541
allele frequency: 5.440466613032985e-2
allele num: 9944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12982_666+12983delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+21_12+22delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12982_726+12983delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12982_858+12983delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12982_567+12983delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24771_90+24772delTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12982_615+12983delTT
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 7.5e0
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 6.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 61
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CAA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-19688964-A-AAAAAAAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688973
    reference: chr 0
allele count: 1
allele frequency: 4.947311136397368e-5
allele num: 20213
alternate allele: AAAAAAAAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20341
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-19688965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688965
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688965
    reference: chr 0
allele count: 1
allele frequency: 4.839334107626791e-5
allele num: 20664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12976T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24765T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12976T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12976T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12976T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+15T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12976T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6575
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-19688972-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688972
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688971
    reference: chr 0
allele count: 8
allele frequency: 3.864921010676844e-4
allele num: 20699
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+7delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12968delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12968delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12968delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24757delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12968delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12968delC
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 19870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15587
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8801
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21959
  bin: 7.5e0
  variant carriers: 0
hgvs: c.12+7delC
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-19688973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688973
    reference: chr 0
allele count: 1229
allele frequency: 1.25638928644449e-1
allele num: 9782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12968C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24757C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+7C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12968C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12968C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12968C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12968C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 1.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 2.5e0
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 16383
  bin: 7.5e0
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 1.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 1.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 19729
  bin: 2.5e0
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 72
hgvs: c.12+7C>T
num of homozygotes: 1
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-19688977-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688977
    reference: chr 0
allele count: 25
allele frequency: 1.590431961320695e-3
allele num: 15719
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12964A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12964A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.12+3A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24753A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12964A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12964A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12964A>T
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22127
  bin: 2.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 19364
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.75e1
  variant carriers: 1
hgvs: c.12+3A>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

X-19688987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688987
    reference: chr 0
allele count: 9
allele frequency: 4.454783942978765e-4
allele num: 20203
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12954G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24743G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.5G>A
  hgvsp: ENSP00000369039.1:p.Gly2Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12954G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12954G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12954G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12954G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18040
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23102
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15700
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Gly2Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

X-19688998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019688998
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019688998
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 21159
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12943C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12943C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12943C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12943C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24732C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12943C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21920
  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 247
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genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20003
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 345
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 911
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19689003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019689003
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019689003
    reference: chr 0
allele count: 2
allele frequency: 9.253689908851155e-5
allele num: 21613
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12938G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12938G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12938G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000380921
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  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12938G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12938G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24727G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-19689004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019689004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019689004
    reference: chr 0
allele count: 1
allele frequency: 4.615313610559837e-5
allele num: 21667
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12937G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12937G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24726G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12937G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12937G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12937G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-19689009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019689009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019689009
    reference: chr 0
allele count: 1
allele frequency: 4.583791712504584e-5
allele num: 21816
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12932G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12932G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12932G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24721G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
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  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12932G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000369020
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  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12932G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
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  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: 5' UTR
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20302
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-19689026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019689026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019689026
    reference: chr 0
allele count: 1
allele frequency: 4.428501837828263e-5
allele num: 22581
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+12915C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+12915C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369039
  ensembl transcript: ENST00000379716
  gene symbol: SH3KBP1
  hgvsc: ENST00000379716.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+24704C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+12915C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+12915C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+12915C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
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genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19801
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17978
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

X-19701400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701400
    reference: chr 0
allele count: 2
allele frequency: 3.902743628771026e-5
allele num: 51246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+541C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+541C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12330C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+541C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+541C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+541C>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19701400-G-GAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701403
    reference: chr 0
allele count: 1
allele frequency: 1.951371814385513e-5
allele num: 51246
alternate allele: GAAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+538_567+540dupGTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12327_90+12329dupGTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+538_666+540dupGTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+538_858+540dupGTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+538_726+540dupGTT
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+538_615+540dupGTT
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1518
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-19701409-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701409
    reference: chr 0
allele count: 1
allele frequency: 1.946699371216103e-5
allele num: 51369
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+532T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12321T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+532T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+532T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+532T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+532T>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-19701416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701416
    reference: chr 0
allele count: 1
allele frequency: 1.940052381414298e-5
allele num: 51545
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+525G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+525G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+525G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+525G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12314G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+525G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10856
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

X-19701426-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701426
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701426
    reference: chr 0
allele count: 2
allele frequency: 3.862047657668096e-5
allele num: 51786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+515C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+515C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+515C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12304C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+515C>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+515C>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-19701430-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701430
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701430
    reference: chr 0
allele count: 1
allele frequency: 1.921451079855507e-5
allele num: 52044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12300A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+511A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+511A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+511A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+511A>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+511A>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

X-19701431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701431
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 51993
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12299G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+510G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+510G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+510G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+510G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+510G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1615
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genotype quality: GenotypeQuality
  all individuals: 21416
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

X-19701446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701446
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701446
    reference: chr 0
allele count: 2
allele frequency: 3.82321455880104e-5
allele num: 52312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12284G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+495G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+495G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+495G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+495G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+495G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 490
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-19701449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701449
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701449
    reference: chr 0
allele count: 4
allele frequency: 7.644237200680337e-5
allele num: 52327
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12281G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+492G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+492G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+492G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+492G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+492G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-19701449-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701449
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701448
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52327
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+491delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+491delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+491delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12280delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+491delC
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+491delC
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: CG
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-19701450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701450
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701450
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+491C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+491C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+491C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+491C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12280C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+491C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-19701455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701455
    reference: chr 0
allele count: 7
allele frequency: 1.333003256336526e-4
allele num: 52513
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+486T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+486T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+486T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+486T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12275T>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+486T>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

X-19701456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701456
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701456
    reference: chr 0
allele count: 1
allele frequency: 1.902008520998174e-5
allele num: 52576
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+485G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12274G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+485G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+485G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+485G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+485G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-19701461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701461
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+480A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+480A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12269A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+480A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+480A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+480A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

X-19701495-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701495
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701495
    reference: chr 0
allele count: 99
allele frequency: 1.943691836494287e-3
allele num: 50934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+446A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12235A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+446A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+446A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
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  ensembl gene: ENSG00000147010
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  gene symbol: SH3KBP1
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  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
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  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+446A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1508
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1862
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genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-19701510-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701510
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701510
    reference: chr 0
allele count: 1
allele frequency: 2.015722636565209e-5
allele num: 49610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+431G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+431G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12220G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+431G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+431G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+431G>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3537
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

X-19701519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701519
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701519
    reference: chr 0
allele count: 1
allele frequency: 2.100575557702811e-5
allele num: 47606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+422G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+422G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+422G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+422G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+422G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+12211G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-19701893-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701893
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701893
    reference: chr 0
allele count: 1
allele frequency: 1.157434199865738e-5
allele num: 86398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+48A>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11837A>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+48A>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+48A>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+48A>C
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+48A>C
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 336
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

X-19701904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701904
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701904
    reference: chr 0
allele count: 14
allele frequency: 1.619133532255453e-4
allele num: 86466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+37G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+37G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+37G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
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  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11826G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+37G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+37G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 211
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-19701909-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701909
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701909
    reference: chr 0
allele count: 1
allele frequency: 1.154881104990241e-5
allele num: 86589
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+32T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+32T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+32T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11821T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+32T>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+32T>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-19701932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701932
    reference: chr 0
allele count: 2
allele frequency: 2.290609645757218e-5
allele num: 87313
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+9G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+9G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11798G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+9G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+9G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+9G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-19701933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701933
    reference: chr 0
allele count: 4
allele frequency: 4.578911821605595e-5
allele num: 87357
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.858+8C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.567+8C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11797C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.666+8C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.615+8C>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.726+8C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 119
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7306
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  variant carriers: 0
hgvs: c.726+8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

X-19701950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701950
    reference: chr 0
allele count: 10
allele frequency: 1.141187748208335e-4
allele num: 87628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.849G>A
  hgvsp: ENST00000379697.3:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11780G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.441G>A
  hgvsp: ENST00000431164.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.717G>A
  hgvsp: ENST00000397821.3:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.558G>A
  hgvsp: ENST00000432234.1:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.657G>A
  hgvsp: ENST00000379726.3:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.606G>A
  hgvsp: ENST00000379698.4:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8962
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33587
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro239Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-19701951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701951
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701951
    reference: chr 0
allele count: 13
allele frequency: 1.483273241750719e-4
allele num: 87644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.605C>T
  hgvsp: ENSP00000369020.4:p.Pro202Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.557C>T
  hgvsp: ENSP00000388766.1:p.Pro186Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.656C>T
  hgvsp: ENSP00000369049.3:p.Pro219Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.716C>T
  hgvsp: ENSP00000380921.3:p.Pro239Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.440C>T
  hgvsp: ENSP00000409292.1:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.848C>T
  hgvsp: ENSP00000369019.3:p.Pro283Leu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11779C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro239Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-19701960-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701960
    reference: chr 0
allele count: 1
allele frequency: 1.140549973197076e-5
allele num: 87677
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.707A>G
  hgvsp: ENSP00000380921.3:p.Asp236Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.548A>G
  hgvsp: ENSP00000388766.1:p.Asp183Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.647A>G
  hgvsp: ENSP00000369049.3:p.Asp216Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.596A>G
  hgvsp: ENSP00000369020.4:p.Asp199Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.839A>G
  hgvsp: ENSP00000369019.3:p.Asp280Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.431A>G
  hgvsp: ENSP00000409292.1:p.Asp144Gly
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11770A>G
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8953
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp236Gly
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-19701970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701970
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701970
    reference: chr 0
allele count: 2
allele frequency: 2.280553718442838e-5
allele num: 87698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.586G>A
  hgvsp: ENSP00000369020.4:p.Val196Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.538G>A
  hgvsp: ENSP00000388766.1:p.Val180Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.697G>A
  hgvsp: ENSP00000380921.3:p.Val233Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.421G>A
  hgvsp: ENSP00000409292.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.637G>A
  hgvsp: ENSP00000369049.3:p.Val213Ile
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11760G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.829G>A
  hgvsp: ENSP00000369019.3:p.Val277Ile
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8953
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val233Ile
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

X-19701980-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701980
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701980
    reference: chr 0
allele count: 1
allele frequency: 1.14009485589201e-5
allele num: 87712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.819G>T
  hgvsp: ENSP00000369019.3:p.Arg273Ser
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.411G>T
  hgvsp: ENSP00000409292.1:p.Arg137Ser
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.627G>T
  hgvsp: ENSP00000369049.3:p.Arg209Ser
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11750G>T
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.528G>T
  hgvsp: ENSP00000388766.1:p.Arg176Ser
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.687G>T
  hgvsp: ENSP00000380921.3:p.Arg229Ser
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.576G>T
  hgvsp: ENSP00000369020.4:p.Arg192Ser
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg229Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-19701998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019701998
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019701998
    reference: chr 0
allele count: 1
allele frequency: 1.139977884429042e-5
allele num: 87721
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.609A>G
  hgvsp: ENST00000379726.3:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11732A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.669A>G
  hgvsp: ENST00000397821.3:c.669A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.558A>G
  hgvsp: ENST00000379698.4:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.510A>G
  hgvsp: ENST00000432234.1:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.801A>G
  hgvsp: ENST00000379697.3:c.801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.393A>G
  hgvsp: ENST00000431164.1:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro223Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-19702004-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019702004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019702004
    reference: chr 0
allele count: 48
allele frequency: 5.519081073001345e-4
allele num: 86971
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.387C>A
  hgvsp: ENSP00000409292.1:p.Asp129Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.504C>A
  hgvsp: ENSP00000388766.1:p.Asp168Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.663C>A
  hgvsp: ENSP00000380921.3:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.552C>A
  hgvsp: ENSP00000369020.4:p.Asp184Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.603C>A
  hgvsp: ENSP00000369049.3:p.Asp201Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.795C>A
  hgvsp: ENSP00000369019.3:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11726C>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 9.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 20433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7340
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33635
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Asp221Glu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-19702006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019702006
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019702006
    reference: chr 0
allele count: 18
allele frequency: 2.052545155993432e-4
allele num: 87696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.793G>A
  hgvsp: ENSP00000369019.3:p.Asp265Asn
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.385G>A
  hgvsp: ENSP00000409292.1:p.Asp129Asn
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.502G>A
  hgvsp: ENSP00000388766.1:p.Asp168Asn
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.601G>A
  hgvsp: ENSP00000369049.3:p.Asp201Asn
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.661G>A
  hgvsp: ENSP00000380921.3:p.Asp221Asn
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11724G>A
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.550G>A
  hgvsp: ENSP00000369020.4:p.Asp184Asn
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33953
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp221Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-19702010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019702010
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019702010
    reference: chr 0
allele count: 1
allele frequency: 1.139964889081416e-5
allele num: 87722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.597C>T
  hgvsp: ENST00000379726.3:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.657C>T
  hgvsp: ENST00000397821.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.381C>T
  hgvsp: ENST00000431164.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.546C>T
  hgvsp: ENST00000379698.4:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.789C>T
  hgvsp: ENST00000379697.3:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.498C>T
  hgvsp: ENST00000432234.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11720C>T
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7447
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe219Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

X-19702070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019702070
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019702070
    reference: chr 0
allele count: 1
allele frequency: 1.140029868782562e-5
allele num: 87717
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.438A>G
  hgvsp: ENST00000432234.1:c.438A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.537A>G
  hgvsp: ENST00000379726.3:c.537A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.729A>G
  hgvsp: ENST00000379697.3:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.321A>G
  hgvsp: ENST00000431164.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11660A>G
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.486A>G
  hgvsp: ENST00000379698.4:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.597A>G
  hgvsp: ENST00000397821.3:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8446
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr199Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-19702075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019702075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019702075
    reference: chr 0
allele count: 1
allele frequency: 1.140224852340882e-5
allele num: 87702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369020
  ensembl transcript: ENST00000379698
  gene symbol: SH3KBP1
  hgvsc: ENST00000379698.4:c.481G>A
  hgvsp: ENSP00000369020.4:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000388766
  ensembl transcript: ENST00000432234
  gene symbol: SH3KBP1
  hgvsc: ENST00000432234.1:c.433G>A
  hgvsp: ENSP00000388766.1:p.Gly145Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000409292
  ensembl transcript: ENST00000431164
  gene symbol: SH3KBP1
  hgvsc: ENST00000431164.1:c.316G>A
  hgvsp: ENSP00000409292.1:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000380921
  ensembl transcript: ENST00000397821
  gene symbol: SH3KBP1
  hgvsc: ENST00000397821.3:c.592G>A
  hgvsp: ENSP00000380921.3:p.Gly198Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369049
  ensembl transcript: ENST00000379726
  gene symbol: SH3KBP1
  hgvsc: ENST00000379726.3:c.532G>A
  hgvsp: ENSP00000369049.3:p.Gly178Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147010
  ensembl protein: ENSP00000369019
  ensembl transcript: ENST00000379697
  gene symbol: SH3KBP1
  hgvsc: ENST00000379697.3:c.724G>A
  hgvsp: ENSP00000369019.3:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/13867
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147010
  ensembl transcript: ENST00000494961
  gene symbol: SH3KBP1
  hgvsc: ENST00000494961.1:n.90+11655G>A
  variant of: http://identifiers.org/hgnc/13867
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly198Arg
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084853539038883e-5
allele num: 47965
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

QD
type: SiteQuality
SIO_000300: 3.366e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -8.601e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.619e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.08e-1

DP
type: SiteQuality
SIO_000300: 2.952374e6

GenotypeQuality
all individuals: 2150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10101
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.364e0

QD
type: SiteQuality
SIO_000300: 7.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 1.925e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.884e0

DP
type: SiteQuality
SIO_000300: 2.953991e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47873
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075268817204301e-4
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.938226e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
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SIO_000300: -2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.41e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.156e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.534e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.936356e6

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 1.299e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 4.407e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.093583167591333e-5
allele num: 47765
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.898451e6

FS
type: SiteQuality
SIO_000300: 1.156e0

MQ
type: SiteQuality
SIO_000300: 6.159e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.464e0

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

QD
type: SiteQuality
SIO_000300: 1.716e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1912
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GenotypeQuality
all individuals: 25909
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.176609012825038e-4
allele num: 8499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.839624e6

QD
type: SiteQuality
SIO_000300: 4.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.082368221669012e-4
allele num: 9239
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 4.439e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.511e0

DP
type: SiteQuality
SIO_000300: 8.495203e6

VQSLOD
type: SiteQuality
SIO_000300: -4.224e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.594e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9137
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.303669745905227e-5
allele num: 43409
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.163e0

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 8.496705e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: -2.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

FS
type: SiteQuality
SIO_000300: 1.9624e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.302555836979047e-5
allele num: 43430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6541
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
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South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50841
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variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 1.094331363536879e-4
allele num: 9138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.302767927048312e-5
allele num: 43426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 8.502952e6

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.461e1

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.300000000000001e0

FS
type: SiteQuality
SIO_000300: 1.357e0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50842
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43439
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9137
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9365
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.59821000479463e-4
allele num: 6257
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.402e-1

QD
type: SiteQuality
SIO_000300: 3.375e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 8.509592e6

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50842
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43443
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.066325442525059e-4
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.704e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.37e-2

DP
type: SiteQuality
SIO_000300: 8.510644e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 2720
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43451
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.057169061449098e-4
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.09421162052741e-4
allele num: 9139
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6259
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 1.377e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 8.514321e6

VQSLOD
type: SiteQuality
SIO_000300: -1.422e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50843
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
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GenotypeQuality
all individuals: 690
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
all individuals: 2803
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.204712812960235e-5
allele num: 43456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

DP
type: SiteQuality
SIO_000300: 8.515295e6

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.550000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

FS
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.667e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.09421162052741e-3
allele num: 9139
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.300966405890474e-5
allele num: 43460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e0

DP
type: SiteQuality
SIO_000300: 8.516834e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.469999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 2.323e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 180
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GenotypeQuality
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GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3313
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6545
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.298058140870964e-5
allele num: 43515
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 8.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.223e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 8.526529e6

GenotypeQuality
all individuals: 3434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.036376826614157e-4
allele num: 9649
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6545
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.52755e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 2.581e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 460
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GenotypeQuality
all individuals: 130
bin: 3.25e1
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GenotypeQuality
all individuals: 214
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variant carriers: 0

GenotypeQuality
all individuals: 50853
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9665
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.055300947143294e-4
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.142e1

QD
type: SiteQuality
SIO_000300: 1.82e1

DP
type: SiteQuality
SIO_000300: 8.527945e6

MQRankSum
type: SiteQuality
SIO_000300: 4.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50853
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 31
bin: 4.75e1
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GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.5e0
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GenotypeQuality
all individuals: 61
bin: 5.75e1
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GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.098213363626975e-4
allele num: 9683
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.892e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.806e0

QD
type: SiteQuality
SIO_000300: 2.255e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 8.52788e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50856
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6547
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.29742458703793e-5
allele num: 43527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9681
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.110370863868532e-3
allele num: 4503
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

DP
type: SiteQuality
SIO_000300: 8.528148e6

QD
type: SiteQuality
SIO_000300: 1.503e1

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 400
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50888
bin: 9.75e1
variant carriers: 302

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 131
allele frequency: 3.008865818365566e-3
allele num: 43538
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 3.719505524559676e-3
allele num: 9141
num of homozygotes: 1

Other
type: Population
allele count: 7
allele frequency: 1.228070175438596e-2
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 134
allele frequency: 2.046426389737325e-2
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 7.229911175376988e-4
allele num: 9682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 1.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.764e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

DP
type: SiteQuality
SIO_000300: 8.553013e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.679e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

GenotypeQuality
all individuals: 6148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 153
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1305
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 461
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3889
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 987
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.808e1

DP
type: SiteQuality
SIO_000300: 3.95865e5

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 284
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 315
bin: 6.75e1
variant carriers: 3

Latino
type: Population
allele count: 7
allele frequency: 1.994301994301994e-2
allele num: 351
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 6.706408345752608e-2
allele num: 671
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 17
allele frequency: 1.988304093567252e-2
allele num: 855
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.0e-3
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 97
allele frequency: 2.12253829321663e-2
allele num: 4570
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 1.318071453347208e-2
allele num: 2883
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.754385964912281e-2
allele num: 114
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.6068e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.092e0

QD
type: SiteQuality
SIO_000300: 5.88e0

GenotypeQuality
all individuals: 353
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 284
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 315
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2828
bin: 9.75e1
variant carriers: 215

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 4

Latino
type: Population
allele count: 4
allele frequency: 1.13960113960114e-2
allele num: 351
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.0e-3
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 41
allele frequency: 1.422129725979882e-2
allele num: 2883
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 3.04093567251462e-2
allele num: 855
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 7.451564828614009e-2
allele num: 671
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 2.647702407002188e-2
allele num: 4570
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 4.385964912280702e-2
allele num: 114
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

QD
type: SiteQuality
SIO_000300: 5.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.092e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 4.6068e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 315
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 353
bin: 6.25e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 4.0e-3
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 4.856052722858134e-3
allele num: 2883
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 2.339181286549707e-2
allele num: 855
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.698005698005698e-3
allele num: 351
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 70
allele frequency: 1.531728665207877e-2
allele num: 4570
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 9.239940387481371e-2
allele num: 671
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.631578947368421e-2
allele num: 114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.092e0

QD
type: SiteQuality
SIO_000300: 5.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.6068e5

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2828
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 315
bin: 6.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 7.017543859649123e-3
allele num: 855
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 8.047690014903129e-2
allele num: 671
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 3.815469996531391e-3
allele num: 2883
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.698005698005698e-3
allele num: 351
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.771929824561403e-3
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 5.908096280087528e-3
allele num: 4570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.6068e5

FS
type: SiteQuality
SIO_000300: 2.092e0

QD
type: SiteQuality
SIO_000300: 5.88e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 329

GenotypeQuality
all individuals: 284
bin: 4.25e1
variant carriers: 169

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 133

GenotypeQuality
all individuals: 22343
bin: 2.5e0
variant carriers: 140

GenotypeQuality
all individuals: 6359
bin: 7.5e0
variant carriers: 232

GenotypeQuality
all individuals: 353
bin: 6.25e1
variant carriers: 261

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 209

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 205

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 200

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 258

East Asian
type: Population
allele count: 162
allele frequency: 3.24e-1
allele num: 500
num of homozygotes: 0

Latino
type: Population
allele count: 91
allele frequency: 2.592592592592592e-1
allele num: 351
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 1.311475409836066e-1
allele num: 671
num of homozygotes: 0

South Asian
type: Population
allele count: 589
allele frequency: 2.043010752688172e-1
allele num: 2883
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 1.754385964912281e-1
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1301
allele frequency: 2.846827133479212e-1
allele num: 4570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 233
allele frequency: 2.725146198830409e-1
allele num: 855
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.092e0

QD
type: SiteQuality
SIO_000300: 5.88e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.6068e5

MQ
type: SiteQuality
SIO_000300: 5.877e1

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 70

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 89

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 51

GenotypeQuality
all individuals: 315
bin: 6.75e1
variant carriers: 57

GenotypeQuality
all individuals: 6359
bin: 7.5e0
variant carriers: 84

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 97

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 119

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 66

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 58

GenotypeQuality
all individuals: 2828
bin: 9.75e1
variant carriers: 537

Latino
type: Population
allele count: 27
allele frequency: 7.692307692307693e-2
allele num: 351
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 9.649122807017543e-2
allele num: 114
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.788375558867362e-2
allele num: 671
num of homozygotes: 0

South Asian
type: Population
allele count: 156
allele frequency: 5.411030176899063e-2
allele num: 2883
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 5.2e-2
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 4.444444444444445e-2
allele num: 855
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 271
allele frequency: 5.929978118161926e-2
allele num: 4570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 4.6068e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 5.88e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 4628
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1467
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1449
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.312551953449709e-4
allele num: 1203
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9789
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

DP
type: SiteQuality
SIO_000300: 5.73636e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.597e1

VQSLOD
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.69e-2

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4458
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.971083856815236e-5
allele num: 10029
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 195
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4759
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1437
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.74628e5

FS
type: SiteQuality
SIO_000300: 2.017e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2534
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1172
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.626905235255136e-4
allele num: 1509
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.010025062656642e-4
allele num: 9975
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1439
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 2.03804347826087e-3
allele num: 1472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.82141e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.895e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.14e-1

FS
type: SiteQuality
SIO_000300: 9.1825e1

VQSLOD
type: SiteQuality
SIO_000300: -6.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

QD
type: SiteQuality
SIO_000300: 5.72e0

GenotypeQuality
all individuals: 716
bin: 2.75e1
variant carriers: 82

GenotypeQuality
all individuals: 384
bin: 6.25e1
variant carriers: 46

GenotypeQuality
all individuals: 142
bin: 7.25e1
variant carriers: 57

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 60

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 71

GenotypeQuality
all individuals: 14876
bin: 7.5e0
variant carriers: 94

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 42

GenotypeQuality
all individuals: 1487
bin: 9.75e1
variant carriers: 1196

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 34

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 27

European (Finnish)
type: Population
allele count: 162
allele frequency: 2.114882506527415e-1
allele num: 766
num of homozygotes: 1

African
type: Population
allele count: 271
allele frequency: 3.325153374233129e-1
allele num: 815
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 548
allele frequency: 1.151260504201681e-1
allele num: 4760
num of homozygotes: 0

South Asian
type: Population
allele count: 184
allele frequency: 8.397991784573254e-2
allele num: 2191
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.029769959404601e-2
allele num: 739
num of homozygotes: 0

Latino
type: Population
allele count: 36
allele frequency: 9.022556390977443e-2
allele num: 399
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.160714285714286e-1
allele num: 112
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 5.68221e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.496e-1

FS
type: SiteQuality
SIO_000300: 3.2348e1

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

QD
type: SiteQuality
SIO_000300: 1.106e1

GenotypeQuality
all individuals: 543
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1264
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7627
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1450
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1472
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1227
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.824858757062147e-3
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.043024771838331e-2
allele num: 767
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-3
allele num: 932
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.784688995215311e-4
allele num: 4180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.547787953050432e-3
allele num: 7753
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 5.5858e5

VQSLOD
type: SiteQuality
SIO_000300: -1.795e1

FS
type: SiteQuality
SIO_000300: 6.3098e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
all individuals: 21630
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 906
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1272
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 2

Other
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 4.774897680763984e-3
allele num: 1466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1467
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4729
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.029760065904644e-4
allele num: 9711
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.84099e5

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

FS
type: SiteQuality
SIO_000300: 1.827e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1475
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1413
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1519
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1519
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 6.01803e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -3.267e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e0

GenotypeQuality
all individuals: 3693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19543
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.915525332822527e-4
allele num: 10441
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1465
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 6.07001e5

FS
type: SiteQuality
SIO_000300: 3.041e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 2.161e1

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 1243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1567
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.083333333333333e-4
allele num: 4800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10455
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.351e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 6.07225e5

MQ
type: SiteQuality
SIO_000300: 5.873e1

QD
type: SiteQuality
SIO_000300: 5.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.450902561194594e-5
allele num: 10581
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1627
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.06e1

FS
type: SiteQuality
SIO_000300: 2.029e0

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

QD
type: SiteQuality
SIO_000300: 6.72e0

DP
type: SiteQuality
SIO_000300: 6.09782e5

GenotypeQuality
all individuals: 414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.055510278004166e-5
allele num: 11043
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

DP
type: SiteQuality
SIO_000300: 6.06155e5

QD
type: SiteQuality
SIO_000300: 2.659e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

GenotypeQuality
all individuals: 3093
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4956
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2943
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.888780249327792e-4
allele num: 4091
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6335
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

DP
type: SiteQuality
SIO_000300: 7.80779e5

FS
type: SiteQuality
SIO_000300: 2.927e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.831e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6335
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.678905157825031e-5
allele num: 27182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2943
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 2.927e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 7.80779e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

QD
type: SiteQuality
SIO_000300: 1.831e1

GenotypeQuality
all individuals: 1946
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3871
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27265
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5845
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.21141088014153e-4
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2947
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 7.96369e5

VQSLOD
type: SiteQuality
SIO_000300: -2.563e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4535
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2967
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4129
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.579030475288173e-4
allele num: 6333
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

FS
type: SiteQuality
SIO_000300: 4.634e0

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

DP
type: SiteQuality
SIO_000300: 8.12824e5

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2967
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.374957813027337e-4
allele num: 5926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 363
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4153
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4551
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

FS
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 8.43e0

VQSLOD
type: SiteQuality
SIO_000300: -2.098e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

DP
type: SiteQuality
SIO_000300: 8.38065e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 13205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
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variant carriers: 1

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2981
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.568381430363864e-4
allele num: 6376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5963
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

MQ
type: SiteQuality
SIO_000300: 5.662e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.576e-1

QD
type: SiteQuality
SIO_000300: 2.432e1

DP
type: SiteQuality
SIO_000300: 8.4281e5

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.901e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.45797e5

GenotypeQuality
all individuals: 1528
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.125488357555868e-4
allele num: 6399
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27767
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 369
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.808e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

DP
type: SiteQuality
SIO_000300: 8.64945e5

GenotypeQuality
all individuals: 15146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 2
allele frequency: 3.337783711615487e-4
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.747252747252747e-3
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6409
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27755
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.1767522855899e-4
allele num: 4594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.109e0

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
type: SiteQuality
SIO_000300: 8.68243e5

QD
type: SiteQuality
SIO_000300: 8.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4898
bin: 7.5e0
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GenotypeQuality
all individuals: 1442
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27755
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2990
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 1.109e0

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.68243e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 8.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeQuality
all individuals: 2236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4211
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27775
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 369
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2991
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 8.71386e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

FS
type: SiteQuality
SIO_000300: 2.966e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

QD
type: SiteQuality
SIO_000300: 2.218e1

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4904
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6003
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4609
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3001
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 9.357454772301934e-4
allele num: 6412
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.585257421482863e-5
allele num: 27892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 3.18e0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e0

DP
type: SiteQuality
SIO_000300: 8.65497e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

QD
type: SiteQuality
SIO_000300: 2.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 412
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27919
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6011
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.361832782239018e-4
allele num: 4234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 8.66621e5

MQ
type: SiteQuality
SIO_000300: 5.796e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 2.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e0

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 430
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27855
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6409
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3001
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.60115e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.404e-1

QD
type: SiteQuality
SIO_000300: 1.926e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3989
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

East Asian
type: Population
allele count: 88
allele frequency: 2.148962148962149e-2
allele num: 4095
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.600768368817032e-3
allele num: 6247
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.735809755250825e-4
allele num: 5761
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.649e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

DP
type: SiteQuality
SIO_000300: 7.79029e5

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 304
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GenotypeQuality
all individuals: 1423
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.798959085210652e-5
allele num: 26323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2883
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 7.37647e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 1602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8239
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variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 1487
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3747
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.905124785673462e-4
allele num: 5249
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25266
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.969e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 1.2825e1

DP
type: SiteQuality
SIO_000300: 7.32708e5

VQSLOD
type: SiteQuality
SIO_000300: -2.341e0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.247e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098679930323826e-5
allele num: 47649
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

QD
type: SiteQuality
SIO_000300: 2.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.859e0

DP
type: SiteQuality
SIO_000300: 1.92306e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097623392696075e-5
allele num: 47673
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.413594062904936e-3
allele num: 8489
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078865033984249e-4
allele num: 9269
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9329
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.72e1

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 1.943e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.272e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.942933e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1832
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096348161502662e-5
allele num: 47702
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.098e0

VQSLOD
type: SiteQuality
SIO_000300: -5.527e-1

FS
type: SiteQuality
SIO_000300: 2.643e0

QD
type: SiteQuality
SIO_000300: 1.346e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.950314e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
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GenotypeQuality
all individuals: 2256
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GenotypeQuality
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GenotypeQuality
all individuals: 118
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GenotypeQuality
all individuals: 8960
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 2.024086630907803e-4
allele num: 9881
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.671e0

FS
type: SiteQuality
SIO_000300: 3.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.981905e6

GenotypeQuality
all individuals: 2257
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GenotypeQuality
all individuals: 3000
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1830
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GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.263440298974884e-5
allele num: 47897
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.008979921299566e-4
allele num: 9911
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 1.898e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.982822e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.302e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10093
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.085288291106245e-4
allele num: 47955
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.449999999999999e0

FS
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 1.689e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 1.990541e6

GenotypeQuality
all individuals: 8961
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2380
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.042578923224488e-4
allele num: 47958
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.94059405940594e-4
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512172992590352e-4
allele num: 6613
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 1.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.891e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.896e1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.99084e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

QD
type: SiteQuality
SIO_000300: 1.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 9.25e1
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GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.203e0

DP
type: SiteQuality
SIO_000300: 1.990899e6

QD
type: SiteQuality
SIO_000300: 1.622e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.173e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-2

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 33712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7359
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variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47978
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.349072116513977e-4
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.939e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 3.643e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.523e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.729e0

DP
type: SiteQuality
SIO_000300: 1.991393e6

GenotypeQuality
all individuals: 1109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
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variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8952
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7361
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variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.248e0

DP
type: SiteQuality
SIO_000300: 1.991393e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.053e0

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8953
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variant carriers: 1

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 7359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33705
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.406e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 8.67e0

DP
type: SiteQuality
SIO_000300: 1.991725e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1822
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 5

GenotypeQuality
all individuals: 8236
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 2267
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GenotypeQuality
all individuals: 2366
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.152620815843289e-4
allele num: 9291
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.430615164520744e-3
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 5.880746854850566e-4
allele num: 47613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.378043178686265e-3
allele num: 4354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.866e2

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 1.9644e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.853e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 8.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.056e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 2.047761e6

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2403
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 17
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8444
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3042
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.709462275948312e-4
allele num: 47980
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.523608174770966e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.213368747233289e-4
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.437e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: -5.455e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 1.01144e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.971157e6

GenotypeQuality
all individuals: 2402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 33967
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2316
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 3041
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083593782556153e-5
allele num: 47994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 2.395e1

FS
type: SiteQuality
SIO_000300: 2.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 1.965935e6

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8517
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: -2.903e0

DP
type: SiteQuality
SIO_000300: 1.965546e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.779999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 3.128e1