20-61917015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917015
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917015
    reference: chr 20
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.272G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.52G>A
  hgvsp: ENSP00000429770.1:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*290G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.445G>A
  hgvsp: ENSP00000443716.1:p.Gly149Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.784G>A
  hgvsp: ENSP00000359306.4:p.Gly262Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.498G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.592G>A
  hgvsp: ENSP00000449800.1:p.Gly198Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.288G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.649G>A
  hgvsp: ENSP00000429674.2:p.Gly217Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.178G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430929
  ensembl transcript: ENST00000522403
  gene symbol: ARFGAP1
  hgvsc: ENST00000522403.2:c.784G>A
  hgvsp: ENST00000522403.2:c.784G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.818G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.655G>A
  hgvsp: ENSP00000430500.1:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.784G>A
  hgvsp: ENSP00000359298.4:p.Gly262Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.562G>A
  hgvsp: ENSP00000447037.1:p.Gly188Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.814G>A
  hgvsp: ENSP00000314615.3:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly272Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

20-61917016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917016
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917016
    reference: chr 20
allele count: 2
allele frequency: 1.657550140891762e-5
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.563G>A
  hgvsp: ENSP00000447037.1:p.Gly188Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.499G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.289G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.446G>A
  hgvsp: ENSP00000443716.1:p.Gly149Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.815G>A
  hgvsp: ENSP00000314615.3:p.Gly272Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.593G>A
  hgvsp: ENSP00000449800.1:p.Gly198Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.656G>A
  hgvsp: ENSP00000430500.1:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.650G>A
  hgvsp: ENSP00000429674.2:p.Gly217Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.819G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.53G>A
  hgvsp: ENSP00000429770.1:p.Gly18Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.273G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.785G>A
  hgvsp: ENSP00000359298.4:p.Gly262Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*291G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.785G>A
  hgvsp: ENSP00000359306.4:p.Gly262Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.179G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly272Glu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

20-61917023-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917023
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917023
    reference: chr 20
allele count: 3
allele frequency: 2.48616037391852e-5
allele num: 120668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.792T>C
  hgvsp: ENST00000370283.4:c.792T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.60T>C
  hgvsp: ENST00000523460.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*298T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.296T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.822T>C
  hgvsp: ENST00000353546.3:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.570T>C
  hgvsp: ENST00000549047.1:c.570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.453T>C
  hgvsp: ENST00000519273.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.186T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.826T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.600T>C
  hgvsp: ENST00000547204.1:c.600T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.280T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.657T>C
  hgvsp: ENST00000518601.2:c.657T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.663T>C
  hgvsp: ENST00000519604.1:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.506T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.792T>C
  hgvsp: ENST00000370275.4:c.792T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile274Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-61917031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917031
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917031
    reference: chr 20
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.671A>G
  hgvsp: ENSP00000430500.1:p.Asp224Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.665A>G
  hgvsp: ENSP00000429674.2:p.Asp222Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.514A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*306A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.68A>G
  hgvsp: ENSP00000429770.1:p.Asp23Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.608A>G
  hgvsp: ENSP00000449800.1:p.Asp203Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.461A>G
  hgvsp: ENSP00000443716.1:p.Asp154Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.288A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.578A>G
  hgvsp: ENSP00000447037.1:p.Asp193Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.194A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.834A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.830A>G
  hgvsp: ENSP00000314615.3:p.Asp277Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.304A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.800A>G
  hgvsp: ENSP00000359298.4:p.Asp267Gly
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.800A>G
  hgvsp: ENSP00000359306.4:p.Asp267Gly
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp277Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

20-61917032-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917032
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917032
    reference: chr 20
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.831T>A
  hgvsp: ENSP00000314615.3:p.Asp277Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.609T>A
  hgvsp: ENSP00000449800.1:p.Asp203Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.195T>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.672T>A
  hgvsp: ENSP00000430500.1:p.Asp224Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.835T>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.666T>A
  hgvsp: ENSP00000429674.2:p.Asp222Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*307T>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.462T>A
  hgvsp: ENSP00000443716.1:p.Asp154Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.801T>A
  hgvsp: ENSP00000359298.4:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.801T>A
  hgvsp: ENSP00000359306.4:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.69T>A
  hgvsp: ENSP00000429770.1:p.Asp23Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.515T>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.579T>A
  hgvsp: ENSP00000447037.1:p.Asp193Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.305T>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.289T>A
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp277Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

20-61917040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917040
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917040
    reference: chr 20
allele count: 11
allele frequency: 9.116676888395299e-5
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.839G>A
  hgvsp: ENSP00000314615.3:p.Ser280Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.680G>A
  hgvsp: ENSP00000430500.1:p.Ser227Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.809G>A
  hgvsp: ENSP00000359298.4:p.Ser270Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.809G>A
  hgvsp: ENSP00000359306.4:p.Ser270Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.843G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.297G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.617G>A
  hgvsp: ENSP00000449800.1:p.Ser206Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.674G>A
  hgvsp: ENSP00000429674.2:p.Ser225Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.313G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.587G>A
  hgvsp: ENSP00000447037.1:p.Ser196Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.470G>A
  hgvsp: ENSP00000443716.1:p.Ser157Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.523G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.77G>A
  hgvsp: ENSP00000429770.1:p.Ser26Asn
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.203G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*315G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser280Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

20-61917051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917051
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917051
    reference: chr 20
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.850C>T
  hgvsp: ENSP00000314615.3:p.Gln284Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.308C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.691C>T
  hgvsp: ENSP00000430500.1:p.Gln231Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.598C>T
  hgvsp: ENSP00000447037.1:p.Gln200Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.820C>T
  hgvsp: ENSP00000359306.4:p.Gln274Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.534C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.854C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.481C>T
  hgvsp: ENSP00000443716.1:p.Gln161Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.685C>T
  hgvsp: ENSP00000429674.2:p.Gln229Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.88C>T
  hgvsp: ENSP00000429770.1:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.324C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.820C>T
  hgvsp: ENSP00000359298.4:p.Gln274Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.214C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.628C>T
  hgvsp: ENSP00000449800.1:p.Gln210Ter
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*326C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln284Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-61917061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917061
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917061
    reference: chr 20
allele count: 6
allele frequency: 4.976032111993896e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.318C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.860C>T
  hgvsp: ENSP00000314615.3:p.Ser287Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.544C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.608C>T
  hgvsp: ENSP00000447037.1:p.Ser203Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.701C>T
  hgvsp: ENSP00000430500.1:p.Ser234Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.491C>T
  hgvsp: ENSP00000443716.1:p.Ser164Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*336C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.695C>T
  hgvsp: ENSP00000429674.2:p.Ser232Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.830C>T
  hgvsp: ENSP00000359306.4:p.Ser277Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.638C>T
  hgvsp: ENSP00000449800.1:p.Ser213Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.98C>T
  hgvsp: ENSP00000429770.1:p.Ser33Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.334C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.224C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.864C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.830C>T
  hgvsp: ENSP00000359298.4:p.Ser277Phe
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser287Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

20-61917063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917063
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917063
    reference: chr 20
allele count: 83
allele frequency: 6.883396914911262e-4
allele num: 120580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.336A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.320A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.640A>G
  hgvsp: ENSP00000449800.1:p.Lys214Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*338A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.226A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.100A>G
  hgvsp: ENSP00000429770.1:p.Lys34Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.546A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.493A>G
  hgvsp: ENSP00000443716.1:p.Lys165Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.832A>G
  hgvsp: ENSP00000359298.4:p.Lys278Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.697A>G
  hgvsp: ENSP00000429674.2:p.Lys233Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.610A>G
  hgvsp: ENSP00000447037.1:p.Lys204Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.703A>G
  hgvsp: ENSP00000430500.1:p.Lys235Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.862A>G
  hgvsp: ENSP00000314615.3:p.Lys288Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.866A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.832A>G
  hgvsp: ENSP00000359306.4:p.Lys278Glu
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys288Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

20-61917065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917065
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917065
    reference: chr 20
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612G>A
  hgvsp: ENST00000549047.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834G>A
  hgvsp: ENST00000370283.4:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834G>A
  hgvsp: ENST00000370275.4:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864G>A
  hgvsp: ENST00000353546.3:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642G>A
  hgvsp: ENST00000547204.1:c.642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495G>A
  hgvsp: ENST00000519273.2:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102G>A
  hgvsp: ENST00000523460.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.548G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705G>A
  hgvsp: ENST00000519604.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.228G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699G>A
  hgvsp: ENST00000518601.2:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.864G>A
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-61917070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917070
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917070
    reference: chr 20
allele count: 2
allele frequency: 1.659282857948795e-5
allele num: 120534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.553G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.327G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.233G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+5G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+5G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.864+5G>A
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

20-61917071-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917071
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917071
    reference: chr 20
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.554G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.234G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.328G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+6G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+6G>C
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.864+6G>C
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

20-61917073-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917073
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917073
    reference: chr 20
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.556G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+8G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.236G>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.330G>C
  variant of: http://identifiers.org/hgnc/15852
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.864+8G>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

20-61917074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917074
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917074
    reference: chr 20
allele count: 7
allele frequency: 5.808261006654608e-5
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.331C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.557C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.237C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+9C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+9C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/20-61917075-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917075
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917075
    reference: chr 20
allele count: 14
allele frequency: 1.161845009875683e-4
allele num: 120498
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.332C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.558C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.238C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+10C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+10C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

20-61917077-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917077
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917077
    reference: chr 20
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.240G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.560G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.334G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+12G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+12G>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

20-61917078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917078
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917078
    reference: chr 20
allele count: 55
allele frequency: 4.564921483350486e-4
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.335C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.241C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.561C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+13C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+13C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

20-61917085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917085
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917085
    reference: chr 20
allele count: 2
allele frequency: 1.660191918185742e-5
allele num: 120468
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.568C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.342C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.248C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+20C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+20C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

20-61917086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917086
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917086
    reference: chr 20
allele count: 1
allele frequency: 8.300821781356355e-6
allele num: 120470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.569G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.343G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.249G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+21G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+21G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

20-61917088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917088
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917088
    reference: chr 20
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.571G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.251G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+23G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.345G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

20-61917089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917089
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917089
    reference: chr 20
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.572G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.252G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.346G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+24G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+24G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

20-61917094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917094
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917094
    reference: chr 20
allele count: 1
allele frequency: 8.306061763875276e-6
allele num: 120394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.351A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.577A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.257A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+29A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+29A>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

20-61917095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917095
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917095
    reference: chr 20
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.352G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.258G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.578G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+30G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+30G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

20-61917098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917098
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917098
    reference: chr 20
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.355G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.261G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.581G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+33G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+33G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/20-61917107-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917107
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917107
    reference: chr 20
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.270C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.364C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.590C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+42C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+42C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

20-61917111-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917111
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917111
    reference: chr 20
allele count: 1
allele frequency: 8.311308366163002e-6
allele num: 120318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.368A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.274A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.594A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.834+46A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+46A>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

20-61917285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917285
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917285
    reference: chr 20
allele count: 2
allele frequency: 2.390057361376673e-4
allele num: 8368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.542C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.448C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.144C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.768C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+220C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.835-47C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28439
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

20-61917297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917297
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917297
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 7912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.554T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.780T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.460T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.156T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.835-35T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+232T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+232T>C
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

20-61917298-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917298
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917298
    reference: chr 20
allele count: 1
allele frequency: 1.279754287176862e-4
allele num: 7814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.555C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.461C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.781C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.835-34C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+233C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.157C>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

20-61917301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917301
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917301
    reference: chr 20
allele count: 1
allele frequency: 1.289989680082559e-4
allele num: 7752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.160G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.784G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000520022
  gene symbol: ARFGAP1
  hgvsc: ENST00000520022.2:n.558G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.464G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+236G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.835-31G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

20-61917305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917305
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917305
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 7848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.468C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.788C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.164C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.835-27C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+240C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+240C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-61917333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917333
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917333
    reference: chr 20
allele count: 1
allele frequency: 1.120071684587814e-4
allele num: 8928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.816G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.192G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.836G>A
  hgvsp: ENSP00000359298.4:p.Cys279Tyr
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+11G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+268G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+268G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys279Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

20-61917342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917342
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917342
    reference: chr 20
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.845G>A
  hgvsp: ENSP00000359298.4:p.Arg282His
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+20G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.825G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+277G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.201G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg282His
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

20-61917348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917348
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917348
    reference: chr 20
allele count: 1
allele frequency: 8.912655971479501e-5
allele num: 11220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.831G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.851G>A
  hgvsp: ENSP00000359298.4:p.Cys284Tyr
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.207G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+26G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+283G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+283G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys284Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

20-61917372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917372
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917372
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 14594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.875C>T
  hgvsp: ENSP00000359298.4:p.Ala292Val
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.855C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+50C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.231C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+307C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+307C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala292Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

20-61917382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917382
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917382
    reference: chr 20
allele count: 1
allele frequency: 6.392227051904884e-5
allele num: 15644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.865G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.241G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+60G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.885G>A
  hgvsp: ENST00000370275.4:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+317G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+317G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu295Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

20-61917386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917386
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917386
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 15800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.245C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.889C>T
  hgvsp: ENSP00000359298.4:p.Arg297Cys
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+64C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.869C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+321C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+321C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg297Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-61917387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917387
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917387
    reference: chr 20
allele count: 1
allele frequency: 6.298815822625347e-5
allele num: 15876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.870G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.495+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.890G>A
  hgvsp: ENSP00000359298.4:p.Arg297His
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.868+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.834+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.102+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.705+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.642+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+65G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.338+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.699+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.246G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.864+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.612+322G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*340+322G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg297His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-61917399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917399
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917399
    reference: chr 20
allele count: 4
allele frequency: 2.469440671687863e-4
allele num: 16198
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-325C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+77C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.902C>T
  hgvsp: ENSP00000359298.4:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-325C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-325C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.882C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.258C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-319C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-319C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro301Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

20-61917424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917424
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917424
    reference: chr 20
allele count: 3
allele frequency: 1.823486506199854e-4
allele num: 16452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.907C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.283C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+102C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-300C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.927C>T
  hgvsp: ENST00000370275.4:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-300C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-294C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-300C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-294C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys309Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

20-61917425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917425
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917425
    reference: chr 20
allele count: 1244
allele frequency: 7.530266343825666e-2
allele num: 16520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.928G>A
  hgvsp: ENSP00000359298.4:p.Gly310Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-299G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.284G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.908G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+103G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-299G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-293G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-299G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 2.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
hgvs: p.Gly310Arg
num of homozygotes: 55
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

20-61917432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917432
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917432
    reference: chr 20
allele count: 1
allele frequency: 6.052536012589275e-5
allele num: 16522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.291C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.935C>T
  hgvsp: ENSP00000359298.4:p.Thr312Met
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.915C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+110C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-292C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-292C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-286C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-292C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-286C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr312Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

20-61917433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917433
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917433
    reference: chr 20
allele count: 13
allele frequency: 7.859733978234582e-4
allele num: 16540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.916G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-291G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.292G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+111G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-291G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.936G>A
  hgvsp: ENST00000370275.4:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-291G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-285G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-285G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr312Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

20-61917442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917442
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917442
    reference: chr 20
allele count: 85
allele frequency: 5.1440329218107e-3
allele num: 16524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-282A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-282A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-282A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.925A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+120A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.945A>G
  hgvsp: ENST00000370275.4:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.301A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-276A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-276A>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Glu315Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

20-61917459-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917459
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917458
    reference: chr 20
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-258delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-258delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.325delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+144delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.949delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.969delC
  hgvsp: ENSP00000359298.4:p.Lys324SerfsTer40
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-252delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-258delC
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-252delC
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys324SerfsTer40
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: TC
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/20-61917460-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917460
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917460
    reference: chr 20
allele count: 7
allele frequency: 4.241910071506484e-4
allele num: 16502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.943C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.963C>A
  hgvsp: ENST00000370275.4:c.963C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.319C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-264C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-264C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+138C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-264C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-258C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-258C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu321Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

20-61917462-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917462
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917462
    reference: chr 20
allele count: 1
allele frequency: 6.04814322003145e-5
allele num: 16534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-262C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.965C>G
  hgvsp: ENSP00000359298.4:p.Pro322Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-262C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.945C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-262C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+140C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.321C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-256C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-256C>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro322Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/20-61917463-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917463
    reference: chr 20
allele count: 1
allele frequency: 6.051071039574004e-5
allele num: 16526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.946C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-261C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+141C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.322C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.966C>A
  hgvsp: ENST00000370275.4:c.966C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-255C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-261C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-261C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro322Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

20-61917463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917463
    reference: chr 20
allele count: 1
allele frequency: 6.051071039574004e-5
allele num: 16526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.322C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.966C>T
  hgvsp: ENST00000370275.4:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-261C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-261C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+141C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.946C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-255C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-261C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro322Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

20-61917464-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917464
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917464
    reference: chr 20
allele count: 2
allele frequency: 1.209921355111918e-4
allele num: 16530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.967C>G
  hgvsp: ENSP00000359298.4:p.Pro323Ala
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-260C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+142C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.323C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.947C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-260C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-254C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-260C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-254C>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro323Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/20-61917465-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917465
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917465
    reference: chr 20
allele count: 2
allele frequency: 1.20962864400629e-4
allele num: 16534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.324C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-259C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+143C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.948C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.968C>A
  hgvsp: ENSP00000359298.4:p.Pro323His
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-259C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-259C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-253C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-253C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro323His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

20-61917465-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917465
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917465
    reference: chr 20
allele count: 1
allele frequency: 6.04814322003145e-5
allele num: 16534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+143C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-259C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-259C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.968C>G
  hgvsp: ENSP00000359298.4:p.Pro323Arg
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.948C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.324C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-259C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-253C>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-253C>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro323Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

20-61917467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917467
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917467
    reference: chr 20
allele count: 1
allele frequency: 6.050338818973863e-5
allele num: 16528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-257A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.970A>G
  hgvsp: ENSP00000359298.4:p.Lys324Glu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.950A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-257A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.326A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+145A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-257A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-251A>G
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-251A>G
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys324Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

20-61917476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917476
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917476
    reference: chr 20
allele count: 1
allele frequency: 6.054001695120475e-5
allele num: 16518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-248G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-248G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-248G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+154G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.979G>A
  hgvsp: ENSP00000359298.4:p.Val327Met
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.959G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.335G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-242G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-242G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val327Met
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

20-61917493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917493
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917493
    reference: chr 20
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+171C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.996C>T
  hgvsp: ENST00000370275.4:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-231C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.976C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-231C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.352C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-231C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-225C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-225C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val332Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

20-61917499-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917499
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917499
    reference: chr 20
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1002A>T
  hgvsp: ENST00000370275.4:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-225A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.358A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+177A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-225A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.982A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-225A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-219A>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-219A>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala334Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-61917501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917501
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917501
    reference: chr 20
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1004G>A
  hgvsp: ENSP00000359298.4:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.360G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-223G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-223G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.984G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+179G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-223G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg335Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

20-61917507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917507
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917507
    reference: chr 20
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+185G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1010G>A
  hgvsp: ENSP00000359298.4:p.Cys337Tyr
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-217G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.366G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.990G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-211G>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-211G>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys337Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

20-61917512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917512
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917512
    reference: chr 20
allele count: 11
allele frequency: 6.673947336488291e-4
allele num: 16482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1015C>T
  hgvsp: ENSP00000359298.4:p.Arg339Cys
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-212C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-212C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-212C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.371C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+190C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.995C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-206C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-206C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg339Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

20-61917516-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917516
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917516
    reference: chr 20
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-208G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.999G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-208G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.375G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1019G>T
  hgvsp: ENSP00000359298.4:p.Cys340Phe
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-208G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+194G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-202G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-202G>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys340Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-61917520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917520
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917520
    reference: chr 20
allele count: 2
allele frequency: 1.207437816952427e-4
allele num: 16564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.379T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.485+198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-204T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1023T>C
  hgvsp: ENST00000370275.4:c.1023T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-204T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-204T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-198T>C
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.1003T>C
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His341His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

20-61917525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917525
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917525
    reference: chr 20
allele count: 2
allele frequency: 1.20496445354862e-4
allele num: 16598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.1008C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.384C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-199C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-199C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1028C>T
  hgvsp: ENSP00000359298.4:p.Pro343Leu
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.486-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-199C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-193C>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-193C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro343Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

20-61917526-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917526
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917526
    reference: chr 20
allele count: 26
allele frequency: 1.568343587887562e-3
allele num: 16578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-198G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1029G>T
  hgvsp: ENST00000370275.4:c.1029G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-198G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.385G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.1009G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.486-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-192G>T
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-198G>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro343Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/20-61917555-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917555
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917555
    reference: chr 20
allele count: 2
allele frequency: 1.186098920649982e-4
allele num: 16862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518794
  gene symbol: ARFGAP1
  hgvsc: ENST00000518794.2:n.869-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000430500
  ensembl transcript: ENST00000519604
  gene symbol: ARFGAP1
  hgvsc: ENST00000519604.1:c.706-169C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000427717
  ensembl transcript: ENST00000520485
  gene symbol: ARFGAP1
  hgvsc: ENST00000520485.1:c.*341-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518618
  gene symbol: ARFGAP1
  hgvsc: ENST00000518618.2:n.486-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000395285
  gene symbol: ARFGAP1
  hgvsc: ENST00000395285.3:n.414C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000443716
  ensembl transcript: ENST00000519273
  gene symbol: ARFGAP1
  hgvsc: ENST00000519273.2:c.496-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000449800
  ensembl transcript: ENST00000547204
  gene symbol: ARFGAP1
  hgvsc: ENST00000547204.1:c.643-169C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000518691
  gene symbol: ARFGAP1
  hgvsc: ENST00000518691.1:n.1038C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429770
  ensembl transcript: ENST00000523460
  gene symbol: ARFGAP1
  hgvsc: ENST00000523460.1:c.103-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000314615
  ensembl transcript: ENST00000353546
  gene symbol: ARFGAP1
  hgvsc: ENST00000353546.3:c.865-169C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359298
  ensembl transcript: ENST00000370275
  gene symbol: ARFGAP1
  hgvsc: ENST00000370275.4:c.1058C>A
  hgvsp: ENSP00000359298.4:p.Pro353Gln
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000429674
  ensembl transcript: ENST00000518601
  gene symbol: ARFGAP1
  hgvsc: ENST00000518601.2:c.700-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl transcript: ENST00000468975
  gene symbol: ARFGAP1
  hgvsc: ENST00000468975.2:n.339-163C>A
  variant of: http://identifiers.org/hgnc/15852
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000447037
  ensembl transcript: ENST00000549047
  gene symbol: ARFGAP1
  hgvsc: ENST00000549047.1:c.613-163C>A
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33441
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro353Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

20-61917555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61917555
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 61917555
    reference: chr 20
allele count: 1
allele frequency: 5.930494603249911e-5
allele num: 16862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101199
  ensembl protein: ENSP00000359306
  ensembl transcript: ENST00000370283
  gene symbol: ARFGAP1
  hgvsc: ENST00000370283.4:c.835-163C>T
  variant of: http://identifiers.org/hgnc/15852
canonical: false
consequence: missense
filter: PASS
hgvs: p.Pro353Leu
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 4587
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2719
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4314
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3635
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 971
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5325
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2642
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6311
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5677
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2045
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 319
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 3.41885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.525e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeDepth
all individuals: 2501
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2719
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4316
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5325
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6311
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5677
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 971
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2640
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 6701
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45672
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.223e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

DP
type: SiteQuality
SIO_000300: 3.419021e6

GenotypeDepth
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4587
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6311
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2506
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5677
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3735
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6377
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3635
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2719
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2643
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45674
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 1.817300702689605e-4
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European (Non-Finnish)
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8640
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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European (Finnish)
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num of homozygotes: 0

Latino
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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African
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QD
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.935359009096187e-4
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
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allele count: 74
allele frequency: 1.12070271088899e-3
allele num: 66030
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 5.92e1

FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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SIO_000300: -1.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -5.347e-1

ClippingRankSum
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MQRankSum
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DP
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QD
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65986
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.54e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 3.056e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.411357e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65978
num of homozygotes: 0

Latino
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allele count: 0
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European (Finnish)
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African
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East Asian
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South Asian
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ClippingRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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Latino
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South Asian
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European (Non-Finnish)
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African
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 8.48073661255149e-4
allele num: 16508
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

BaseQRankSum
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MQ
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SIO_000300: 5.97e1

QD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: -3.56e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516162290011523e-5
allele num: 65956
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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SIO_000300: -5.659999999999999e-1

MQRankSum
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MQ
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.032600454890068e-5
allele num: 65950
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.462603878116343e-4
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 49
allele frequency: 4.744384198295894e-3
allele num: 10328
num of homozygotes: 1

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQ
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SIO_000300: 5.966e1

ClippingRankSum
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SIO_000300: -4.0e-3

ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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SIO_000300: -2.12e0

FS
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SIO_000300: 1.418e0

DP
type: SiteQuality
SIO_000300: 3.410654e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQ
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FS
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DP
type: SiteQuality
SIO_000300: 3.407369e6

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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allele num: 65946
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South Asian
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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SIO_000300: -6.17e-1

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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QD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.464e-1

BaseQRankSum
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FS
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65842
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

South Asian
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European (Finnish)
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East Asian
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Other
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African
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InbreedingCoeff
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DP
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VQSLOD
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.858736059479554e-3
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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QD
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ReadPosRankSum
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MQRankSum
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SIO_000300: 7.31e-1

InbreedingCoeff
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SIO_000300: -8.23e-2

FS
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SIO_000300: 3.965e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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DP
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QD
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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FS
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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DP
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SIO_000300: 1.85679e5

ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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FS
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QD
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

African
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South Asian
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European (Finnish)
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Latino
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East Asian
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Other
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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Latino
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 3872
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.766e0

InbreedingCoeff
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SIO_000300: -5.56e-2

ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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SIO_000300: 5.53e-1

VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 5026
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

VQSLOD
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DP
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MQ
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

VQSLOD
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 7238
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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Latino
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African
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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allele frequency: 5.379236148466917e-4
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num of homozygotes: 0

Latino
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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MQ
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.645464809936018e-4
allele num: 5314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.54e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.33425e5

FS
type: SiteQuality
SIO_000300: 5.6e0

VQSLOD
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.86e0

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 15

GenotypeDepth
all individuals: 86
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variant carriers: 21

GenotypeDepth
all individuals: 3892
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variant carriers: 30

GenotypeDepth
all individuals: 102
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variant carriers: 93

GenotypeDepth
all individuals: 77
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variant carriers: 74

GenotypeDepth
all individuals: 9
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variant carriers: 8

GenotypeDepth
all individuals: 173
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variant carriers: 143

GenotypeDepth
all individuals: 16
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variant carriers: 15

GenotypeQuality
all individuals: 5097
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variant carriers: 8

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 584
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variant carriers: 17

GenotypeQuality
all individuals: 46
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variant carriers: 6

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
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variant carriers: 9

GenotypeQuality
all individuals: 49
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 32

GenotypeQuality
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bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 46
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variant carriers: 6

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 1174

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 222
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 9

European (Finnish)
type: Population
allele count: 196
allele frequency: 1.195121951219512e-1
allele num: 1640
num of homozygotes: 9

South Asian
type: Population
allele count: 614
allele frequency: 8.078947368421052e-2
allele num: 7600
num of homozygotes: 31

African
type: Population
allele count: 10
allele frequency: 1.079913606911447e-2
allele num: 926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 394
allele frequency: 7.356235997012696e-2
allele num: 5356
num of homozygotes: 14

Latino
type: Population
allele count: 18
allele frequency: 6.122448979591837e-2
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.0e-3
allele num: 500
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 4.411764705882353e-2
allele num: 204
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

DP
type: SiteQuality
SIO_000300: 2.5526e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeDepth
all individuals: 6782
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 46
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 9
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GenotypeDepth
all individuals: 5
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GenotypeDepth
all individuals: 2714
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 652
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 5947
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GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 827
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GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 52
bin: 3.25e1
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GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5802
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.077586206896552e-3
allele num: 928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.30828e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.73e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.188e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 4089
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variant carriers: 1

GenotypeDepth
all individuals: 86
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variant carriers: 0

GenotypeDepth
all individuals: 49
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 5801
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 796
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 1016
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GenotypeQuality
all individuals: 6018
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GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 272
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.25e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.077586206896552e-3
allele num: 928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.840490797546012e-3
allele num: 1630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.492537313432836e-3
allele num: 5360
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.854368932038835e-3
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

FS
type: SiteQuality
SIO_000300: 1.111e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.75e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 2.30912e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 11

GenotypeDepth
all individuals: 162
bin: 3.75e1
variant carriers: 5

GenotypeDepth
all individuals: 4068
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2
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variant carriers: 1

GenotypeDepth
all individuals: 157
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variant carriers: 1

GenotypeDepth
all individuals: 7
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variant carriers: 5

GenotypeDepth
all individuals: 23
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variant carriers: 7

GenotypeDepth
all individuals: 6
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variant carriers: 2

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 780
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variant carriers: 0

GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 52
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1001
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GenotypeQuality
all individuals: 665
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 332
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variant carriers: 86

GenotypeQuality
all individuals: 330
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 5793
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.687289088863892e-3
allele num: 5334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 4.347826086956522e-3
allele num: 1610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077586206896552e-3
allele num: 928
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 9.615384615384616e-3
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 66
allele frequency: 8.631964425843578e-3
allele num: 7646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 2.33735e5

QD
type: SiteQuality
SIO_000300: 1.408e1

GenotypeDepth
all individuals: 15
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 2675
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GenotypeDepth
all individuals: 803
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GenotypeDepth
all individuals: 798
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GenotypeDepth
all individuals: 1
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GenotypeDepth
all individuals: 9
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GenotypeDepth
all individuals: 5
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variant carriers: 2

GenotypeQuality
all individuals: 990
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 643
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 7230
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GenotypeQuality
all individuals: 1013
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 326
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 275
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 5749
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.606202762574928e-4
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.994e1

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

DP
type: SiteQuality
SIO_000300: 2.32592e5

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 210
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GenotypeDepth
all individuals: 4
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GenotypeDepth
all individuals: 49
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GenotypeDepth
all individuals: 8
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GenotypeDepth
all individuals: 101
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GenotypeDepth
all individuals: 2
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GenotypeDepth
all individuals: 1
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 7227
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GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 995
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 5747
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GenotypeQuality
all individuals: 326
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GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 1066
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GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 9.394964299135663e-4
allele num: 5322
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 6.418485237483953e-4
allele num: 1558
num of homozygotes: 0

African
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allele frequency: 1.070663811563169e-3
allele num: 934
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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MQ
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FS
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.976284584980237e-3
allele num: 506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.874062968515742e-4
allele num: 5336
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.874062968515742e-4
allele num: 5336
num of homozygotes: 0

African
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East Asian
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Latino
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.871958068139274e-4
allele num: 5342
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
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SIO_000300: -7.672e-1

MQRankSum
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SIO_000300: 4.48e-1

ClippingRankSum
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InbreedingCoeff
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SIO_000300: 4.68e-2

ReadPosRankSum
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SIO_000300: 1.7e0

MQ
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SIO_000300: 6.0e1

QD
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FS
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SIO_000300: 1.977e0

DP
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SIO_000300: 2.3305e5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.874062968515742e-4
allele num: 5336
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.53e-2

BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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FS
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ReadPosRankSum
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SIO_000300: 1.07e-1

MQ
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SIO_000300: 5.962e1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

Latino
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allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.34532e5

MQRankSum
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SIO_000300: -1.16e-1

InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.922e0

VQSLOD
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QD
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BaseQRankSum
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SIO_000300: -2.43e0

ClippingRankSum
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SIO_000300: -5.79e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 1
allele frequency: 1.295336787564767e-4
allele num: 7720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 2.37299e5

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -2.786e0

BaseQRankSum
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SIO_000300: 1.1e-1

FS
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SIO_000300: 1.378e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
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SIO_000300: -1.178e0

QD
type: SiteQuality
SIO_000300: 4.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 1
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allele num: 1000
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Latino
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South Asian
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num of homozygotes: 0

East Asian
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VQSLOD
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QD
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FS
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MQ
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 2.33e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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Other
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 7744
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Latino
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African
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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SIO_000300: 3.75e-1

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3997
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.882530120481928e-4
allele num: 5312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1342
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.291655902867476e-3
allele num: 7742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.49227e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeDepth
all individuals: 14
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 566
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 708
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2351
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18336
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.416195856873823e-4
allele num: 1062
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 2.929e0

VQSLOD
type: SiteQuality
SIO_000300: -1.973e0

DP
type: SiteQuality
SIO_000300: 2.54484e5

QD
type: SiteQuality
SIO_000300: 1.152e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.824e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19842
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.717472118959108e-3
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.58304e5

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.66e-2

QD
type: SiteQuality
SIO_000300: 1.395e1

FS
type: SiteQuality
SIO_000300: 1.989e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
all individuals: 2342
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1666
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23319
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3983
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 21073
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.585315408479835e-4
allele num: 7736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.62482e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

FS
type: SiteQuality
SIO_000300: 5.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

GenotypeDepth
all individuals: 18
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2335
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 23854
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 252
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 697
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21450
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 8.75e1
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GenotypeQuality
all individuals: 5307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 26

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 3.362648732540093e-3
allele num: 7732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

DP
type: SiteQuality
SIO_000300: 2.64557e5

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.920000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.277e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2260
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 16
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
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variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.567606136282554e-4
allele num: 5606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.06e-2

FS
type: SiteQuality
SIO_000300: 1.831e0

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 3.00652e5

QD
type: SiteQuality
SIO_000300: 1.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1