20-39831326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831326
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831326
    reference: chr 20
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2231C>T
  hgvsp: ENSP00000443783.2:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2231C>T
  hgvsp: ENSP00000454006.1:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1356C>T
  hgvsp: ENSP00000405421.1:p.Pro453Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2231C>T
  hgvsp: ENSP00000312222.4:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2231C>T
  hgvsp: ENSP00000415498.3:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1559C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2231C>T
  hgvsp: ENSP00000452965.1:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2231C>T
  hgvsp: ENSP00000442290.1:p.Pro744Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1559C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1732C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro744Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

20-39831330-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831330
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831330
    reference: chr 20
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2227A>G
  hgvsp: ENSP00000452965.1:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2227A>G
  hgvsp: ENSP00000442290.1:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1555A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1352A>G
  hgvsp: ENSP00000405421.1:p.Ile452Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2227A>G
  hgvsp: ENSP00000454006.1:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1728A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2227A>G
  hgvsp: ENSP00000415498.3:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2227A>G
  hgvsp: ENSP00000443783.2:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2227A>G
  hgvsp: ENSP00000312222.4:p.Ile743Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1555A>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile743Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

20-39831341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831341
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831341
    reference: chr 20
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2216G>A
  hgvsp: ENSP00000443783.2:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2216G>A
  hgvsp: ENSP00000454006.1:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1341G>A
  hgvsp: ENSP00000405421.1:p.Gly448Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1717G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2216G>A
  hgvsp: ENSP00000415498.3:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1544G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2216G>A
  hgvsp: ENSP00000452965.1:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2216G>A
  hgvsp: ENSP00000442290.1:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2216G>A
  hgvsp: ENSP00000312222.4:p.Gly739Asp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1544G>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly739Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-39831344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831344
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831344
    reference: chr 20
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2213A>G
  hgvsp: ENSP00000452965.1:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2213A>G
  hgvsp: ENSP00000312222.4:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1541A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2213A>G
  hgvsp: ENSP00000443783.2:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1338A>G
  hgvsp: ENSP00000405421.1:p.Asn447Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2213A>G
  hgvsp: ENSP00000442290.1:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1541A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2213A>G
  hgvsp: ENSP00000454006.1:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2213A>G
  hgvsp: ENSP00000415498.3:p.Asn738Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1714A>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn738Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

20-39831348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831348
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831348
    reference: chr 20
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1334G>C
  hgvsp: ENSP00000405421.1:p.Ala446Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1710G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1537G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2209G>C
  hgvsp: ENSP00000415498.3:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2209G>C
  hgvsp: ENSP00000312222.4:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2209G>C
  hgvsp: ENSP00000442290.1:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1537G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2209G>C
  hgvsp: ENSP00000452965.1:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2209G>C
  hgvsp: ENSP00000443783.2:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2209G>C
  hgvsp: ENSP00000454006.1:p.Ala737Pro
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala737Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

20-39831348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831348
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831348
    reference: chr 20
allele count: 107
allele frequency: 8.814564626410742e-4
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1710G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2209G>A
  hgvsp: ENSP00000442290.1:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2209G>A
  hgvsp: ENSP00000312222.4:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2209G>A
  hgvsp: ENSP00000454006.1:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2209G>A
  hgvsp: ENSP00000452965.1:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2209G>A
  hgvsp: ENSP00000415498.3:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2209G>A
  hgvsp: ENSP00000443783.2:p.Ala737Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1537G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1537G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1334G>A
  hgvsp: ENSP00000405421.1:p.Ala446Thr
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14095
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6447
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala737Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

20-39831350-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831350
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831350
    reference: chr 20
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1535A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2207A>C
  hgvsp: ENSP00000452965.1:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2207A>C
  hgvsp: ENSP00000312222.4:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2207A>C
  hgvsp: ENSP00000415498.3:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2207A>C
  hgvsp: ENSP00000443783.2:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1708A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2207A>C
  hgvsp: ENSP00000442290.1:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1535A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1332A>C
  hgvsp: ENSP00000405421.1:p.Glu445Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2207A>C
  hgvsp: ENSP00000454006.1:p.Glu736Ala
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu736Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/20-39831357-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831357
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831357
    reference: chr 20
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1528G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1325G>T
  hgvsp: ENSP00000405421.1:p.Val443Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2200G>T
  hgvsp: ENSP00000312222.4:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2200G>T
  hgvsp: ENSP00000415498.3:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1528G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2200G>T
  hgvsp: ENSP00000442290.1:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2200G>T
  hgvsp: ENSP00000452965.1:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2200G>T
  hgvsp: ENSP00000454006.1:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2200G>T
  hgvsp: ENSP00000443783.2:p.Val734Phe
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1701G>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val734Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

20-39831376-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831376
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831376
    reference: chr 20
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1306C>G
  hgvsp: ENSP00000405421.1:p.Ile436Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1509C>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2181C>G
  hgvsp: ENSP00000442290.1:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2181C>G
  hgvsp: ENSP00000415498.3:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2181C>G
  hgvsp: ENSP00000452965.1:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1682C>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2181C>G
  hgvsp: ENSP00000443783.2:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2181C>G
  hgvsp: ENSP00000454006.1:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2181C>G
  hgvsp: ENSP00000312222.4:p.Ile727Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1509C>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile727Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

20-39831388-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831388
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831388
    reference: chr 20
allele count: 4
allele frequency: 3.295272930980509e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2169C>A
  hgvsp: ENSP00000442290.1:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2169C>A
  hgvsp: ENSP00000312222.4:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2169C>A
  hgvsp: ENSP00000415498.3:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1497C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2169C>A
  hgvsp: ENSP00000452965.1:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1670C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1497C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2169C>A
  hgvsp: ENSP00000454006.1:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2169C>A
  hgvsp: ENSP00000443783.2:p.Ser723Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1294C>A
  hgvsp: ENSP00000405421.1:p.Ser432Arg
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser723Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

20-39831399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831399
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831399
    reference: chr 20
allele count: 6
allele frequency: 4.942909396470763e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2158C>T
  hgvsp: ENSP00000442290.1:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2158C>T
  hgvsp: ENSP00000415498.3:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2158C>T
  hgvsp: ENSP00000452965.1:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1486C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2158C>T
  hgvsp: ENSP00000443783.2:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2158C>T
  hgvsp: ENSP00000454006.1:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2158C>T
  hgvsp: ENSP00000312222.4:p.Arg720Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1283C>T
  hgvsp: ENSP00000405421.1:p.Arg429Cys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1659C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1486C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg720Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

20-39831407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831407
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831407
    reference: chr 20
allele count: 27
allele frequency: 2.224309228411843e-4
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1275T>C
  hgvsp: ENSP00000405421.1:p.Leu426Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1478T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2150T>C
  hgvsp: ENSP00000442290.1:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2150T>C
  hgvsp: ENSP00000415498.3:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1651T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2150T>C
  hgvsp: ENSP00000454006.1:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2150T>C
  hgvsp: ENSP00000312222.4:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2150T>C
  hgvsp: ENSP00000452965.1:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2150T>C
  hgvsp: ENSP00000443783.2:p.Leu717Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1478T>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu717Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

20-39831410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831410
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831410
    reference: chr 20
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1475T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2147T>C
  hgvsp: ENSP00000452965.1:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2147T>C
  hgvsp: ENSP00000415498.3:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1272T>C
  hgvsp: ENSP00000405421.1:p.Ile425Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1648T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2147T>C
  hgvsp: ENSP00000442290.1:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2147T>C
  hgvsp: ENSP00000454006.1:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2147T>C
  hgvsp: ENSP00000312222.4:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2147T>C
  hgvsp: ENSP00000443783.2:p.Ile716Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1475T>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile716Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

20-39831419-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831419
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831419
    reference: chr 20
allele count: 1591
allele frequency: 1.371480785476613e-2
allele num: 116006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2138G>C
  hgvsp: ENSP00000442290.1:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1639G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2138G>C
  hgvsp: ENSP00000452965.1:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2138G>C
  hgvsp: ENSP00000415498.3:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1263G>C
  hgvsp: ENSP00000405421.1:p.Ser422Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2138G>C
  hgvsp: ENSP00000443783.2:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2138G>C
  hgvsp: ENSP00000312222.4:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1466G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2138G>C
  hgvsp: ENSP00000454006.1:p.Ser713Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1466G>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 37490
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 9.75e1
  variant carriers: 1022
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 7
hgvs: p.Ser713Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-39831420-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831420
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831420
    reference: chr 20
allele count: 1342
allele frequency: 1.107845727116629e-2
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2137A>C
  hgvsp: ENSP00000443783.2:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2137A>C
  hgvsp: ENSP00000452965.1:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1465A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2137A>C
  hgvsp: ENSP00000454006.1:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2137A>C
  hgvsp: ENSP00000415498.3:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1262A>C
  hgvsp: ENSP00000405421.1:p.Ser422Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2137A>C
  hgvsp: ENSP00000442290.1:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1465A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2137A>C
  hgvsp: ENSP00000312222.4:p.Ser713Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1638A>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 37555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44066
  bin: 6.25e1
  variant carriers: 6
hgvs: p.Ser713Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

20-39831433-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831433
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831433
    reference: chr 20
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2124T>A
  hgvsp: ENST00000544979.2:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2124T>A
  hgvsp: ENST00000560361.1:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2124T>A
  hgvsp: ENST00000309060.3:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1625T>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2124T>A
  hgvsp: ENST00000540170.1:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1452T>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2124T>A
  hgvsp: ENST00000432768.2:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2124T>A
  hgvsp: ENST00000559234.1:c.2124T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1249T>A
  hgvsp: ENST00000421422.1:c.1249T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1452T>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser708Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-39831448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831448
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831448
    reference: chr 20
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2109T>C
  hgvsp: ENST00000432768.2:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1437T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2109T>C
  hgvsp: ENST00000544979.2:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2109T>C
  hgvsp: ENST00000560361.1:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2109T>C
  hgvsp: ENST00000540170.1:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1234T>C
  hgvsp: ENST00000421422.1:c.1234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2109T>C
  hgvsp: ENST00000559234.1:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1610T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1437T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2109T>C
  hgvsp: ENST00000309060.3:c.2109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser703Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

20-39831451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831451
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831451
    reference: chr 20
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2106C>T
  hgvsp: ENST00000544979.2:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2106C>T
  hgvsp: ENST00000560361.1:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1434C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1231C>T
  hgvsp: ENST00000421422.1:c.1231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2106C>T
  hgvsp: ENST00000432768.2:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2106C>T
  hgvsp: ENST00000540170.1:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2106C>T
  hgvsp: ENST00000559234.1:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1434C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1607C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2106C>T
  hgvsp: ENST00000309060.3:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val702Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

20-39831453-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831453
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831453
    reference: chr 20
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1605G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2104G>C
  hgvsp: ENSP00000415498.3:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2104G>C
  hgvsp: ENSP00000442290.1:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1229G>C
  hgvsp: ENSP00000405421.1:p.Val411Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1432G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2104G>C
  hgvsp: ENSP00000443783.2:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1432G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2104G>C
  hgvsp: ENSP00000454006.1:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2104G>C
  hgvsp: ENSP00000312222.4:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2104G>C
  hgvsp: ENSP00000452965.1:p.Val702Leu
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val702Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

20-39831467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831467
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831467
    reference: chr 20
allele count: 9
allele frequency: 7.413509060955519e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2090C>T
  hgvsp: ENSP00000415498.3:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2090C>T
  hgvsp: ENSP00000312222.4:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1418C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2090C>T
  hgvsp: ENSP00000442290.1:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2090C>T
  hgvsp: ENSP00000454006.1:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1591C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1215C>T
  hgvsp: ENSP00000405421.1:p.Ala406Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2090C>T
  hgvsp: ENSP00000443783.2:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1418C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2090C>T
  hgvsp: ENSP00000452965.1:p.Ala697Val
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala697Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

20-39831468-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831468
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831468
    reference: chr 20
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2089G>C
  hgvsp: ENSP00000442290.1:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2089G>C
  hgvsp: ENSP00000454006.1:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1417G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2089G>C
  hgvsp: ENSP00000443783.2:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1417G>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2089G>C
  hgvsp: ENSP00000452965.1:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1214G>C
  hgvsp: ENSP00000405421.1:p.Ala406Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2089G>C
  hgvsp: ENSP00000415498.3:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2089G>C
  hgvsp: ENSP00000312222.4:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1590G>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala697Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/20-39831485-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831485
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831485
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2072G>T
  hgvsp: ENSP00000415498.3:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1197G>T
  hgvsp: ENSP00000405421.1:p.Gly400Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1573G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2072G>T
  hgvsp: ENSP00000443783.2:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2072G>T
  hgvsp: ENSP00000452965.1:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2072G>T
  hgvsp: ENSP00000454006.1:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1400G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2072G>T
  hgvsp: ENSP00000312222.4:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2072G>T
  hgvsp: ENSP00000442290.1:p.Gly691Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1400G>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly691Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

20-39831487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831487
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831487
    reference: chr 20
allele count: 127
allele frequency: 1.046076800158147e-3
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1398G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2070G>A
  hgvsp: ENST00000559234.1:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2070G>A
  hgvsp: ENST00000432768.2:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2070G>A
  hgvsp: ENST00000309060.3:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2070G>A
  hgvsp: ENST00000544979.2:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2070G>A
  hgvsp: ENST00000560361.1:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1571G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1398G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1195G>A
  hgvsp: ENST00000421422.1:c.1195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2070G>A
  hgvsp: ENST00000540170.1:c.2070G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu690Glu
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

20-39831490-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831490
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831490
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1568T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2067T>C
  hgvsp: ENST00000560361.1:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2067T>C
  hgvsp: ENST00000559234.1:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2067T>C
  hgvsp: ENST00000544979.2:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1192T>C
  hgvsp: ENST00000421422.1:c.1192T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2067T>C
  hgvsp: ENST00000540170.1:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1395T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2067T>C
  hgvsp: ENST00000432768.2:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1395T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2067T>C
  hgvsp: ENST00000309060.3:c.2067T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp689Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-39831493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831493
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831493
    reference: chr 20
allele count: 9
allele frequency: 7.413020558777017e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2064G>A
  hgvsp: ENST00000540170.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2064G>A
  hgvsp: ENST00000432768.2:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2064G>A
  hgvsp: ENST00000560361.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2064G>A
  hgvsp: ENST00000544979.2:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2064G>A
  hgvsp: ENST00000559234.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1565G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2064G>A
  hgvsp: ENST00000309060.3:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1392G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1392G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1189G>A
  hgvsp: ENST00000421422.1:c.1189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu688Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

20-39831508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831508
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831508
    reference: chr 20
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1377A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2049A>G
  hgvsp: ENST00000559234.1:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2049A>G
  hgvsp: ENST00000560361.1:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2049A>G
  hgvsp: ENST00000544979.2:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1550A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1377A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2049A>G
  hgvsp: ENST00000432768.2:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1174A>G
  hgvsp: ENST00000421422.1:c.1174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2049A>G
  hgvsp: ENST00000540170.1:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2049A>G
  hgvsp: ENST00000309060.3:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu683Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

20-39831512-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831512
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831512
    reference: chr 20
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2045A>G
  hgvsp: ENSP00000452965.1:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2045A>G
  hgvsp: ENSP00000312222.4:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2045A>G
  hgvsp: ENSP00000454006.1:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1170A>G
  hgvsp: ENSP00000405421.1:p.Glu391Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2045A>G
  hgvsp: ENSP00000415498.3:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1373A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2045A>G
  hgvsp: ENSP00000442290.1:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2045A>G
  hgvsp: ENSP00000443783.2:p.Glu682Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1546A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1373A>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Glu682Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

20-39831517-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831517
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831517
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2040T>C
  hgvsp: ENST00000540170.1:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2040T>C
  hgvsp: ENST00000309060.3:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2040T>C
  hgvsp: ENST00000544979.2:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2040T>C
  hgvsp: ENST00000559234.1:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2040T>C
  hgvsp: ENST00000560361.1:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2040T>C
  hgvsp: ENST00000432768.2:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1541T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1368T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1368T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1165T>C
  hgvsp: ENST00000421422.1:c.1165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser680Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

20-39831524-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831524
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831524
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1361A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2033A>G
  hgvsp: ENSP00000452965.1:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1361A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1158A>G
  hgvsp: ENSP00000405421.1:p.Asn387Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2033A>G
  hgvsp: ENSP00000312222.4:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2033A>G
  hgvsp: ENSP00000442290.1:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2033A>G
  hgvsp: ENSP00000415498.3:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2033A>G
  hgvsp: ENSP00000454006.1:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1534A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2033A>G
  hgvsp: ENSP00000443783.2:p.Asn678Ser
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn678Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

20-39831539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831539
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831539
    reference: chr 20
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2018A>G
  hgvsp: ENSP00000415498.3:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2018A>G
  hgvsp: ENSP00000454006.1:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1346A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2018A>G
  hgvsp: ENSP00000442290.1:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2018A>G
  hgvsp: ENSP00000452965.1:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2018A>G
  hgvsp: ENSP00000312222.4:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1143A>G
  hgvsp: ENSP00000405421.1:p.Lys382Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1519A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1346A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2018A>G
  hgvsp: ENSP00000443783.2:p.Lys673Arg
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys673Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

20-39831546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831546
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831546
    reference: chr 20
allele count: 323
allele frequency: 2.660363061311897e-3
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1136G>A
  hgvsp: ENSP00000405421.1:p.Glu380Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2011G>A
  hgvsp: ENSP00000443783.2:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1339G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2011G>A
  hgvsp: ENSP00000415498.3:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2011G>A
  hgvsp: ENSP00000452965.1:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1339G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2011G>A
  hgvsp: ENSP00000454006.1:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2011G>A
  hgvsp: ENSP00000312222.4:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1512G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2011G>A
  hgvsp: ENSP00000442290.1:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu671Lys
num of homozygotes: 2
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum

20-39831546-CCTCAGCATTCACTTTTTTCCGTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831546
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831522
    reference: chr 20
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsp: ENSP00000452965.1:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsp: ENSP00000443783.2:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsp: ENSP00000454006.1:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsp: ENSP00000312222.4:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsp: ENSP00000442290.1:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsp: ENSP00000405421.1:p.Arg372_Glu379del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsp: ENSP00000415498.3:p.Arg663_Glu670del
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg663_Glu670del
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: CCTCAGCATTCACTTTTTTCCGTCT
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

20-39831549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831549
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831549
    reference: chr 20
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1509G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1336G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1133G>A
  hgvsp: ENSP00000405421.1:p.Glu379Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2008G>A
  hgvsp: ENSP00000415498.3:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2008G>A
  hgvsp: ENSP00000452965.1:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2008G>A
  hgvsp: ENSP00000312222.4:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2008G>A
  hgvsp: ENSP00000442290.1:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1336G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2008G>A
  hgvsp: ENSP00000443783.2:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2008G>A
  hgvsp: ENSP00000454006.1:p.Glu670Lys
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44432
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu670Lys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

20-39831550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831550
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831550
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1132T>C
  hgvsp: ENST00000421422.1:c.1132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1335T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1335T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2007T>C
  hgvsp: ENST00000540170.1:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2007T>C
  hgvsp: ENST00000432768.2:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2007T>C
  hgvsp: ENST00000544979.2:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2007T>C
  hgvsp: ENST00000559234.1:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2007T>C
  hgvsp: ENST00000560361.1:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1508T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2007T>C
  hgvsp: ENST00000309060.3:c.2007T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala669Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/20-39831557-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831557
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831557
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1125T>G
  hgvsp: ENSP00000405421.1:p.Val376Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1328T>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.2000T>G
  hgvsp: ENSP00000443783.2:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.2000T>G
  hgvsp: ENSP00000442290.1:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1328T>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.2000T>G
  hgvsp: ENSP00000454006.1:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.2000T>G
  hgvsp: ENSP00000312222.4:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.2000T>G
  hgvsp: ENSP00000452965.1:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.2000T>G
  hgvsp: ENSP00000415498.3:p.Val667Gly
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1501T>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val667Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

20-39831558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831558
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831558
    reference: chr 20
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1327G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1999G>A
  hgvsp: ENSP00000442290.1:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1124G>A
  hgvsp: ENSP00000405421.1:p.Val376Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1999G>A
  hgvsp: ENSP00000443783.2:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1999G>A
  hgvsp: ENSP00000452965.1:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1500G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1999G>A
  hgvsp: ENSP00000454006.1:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1327G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1999G>A
  hgvsp: ENSP00000312222.4:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1999G>A
  hgvsp: ENSP00000415498.3:p.Val667Met
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6138
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val667Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

20-39831563-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831563
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831563
    reference: chr 20
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1322A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1119A>C
  hgvsp: ENSP00000405421.1:p.Lys374Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1994A>C
  hgvsp: ENSP00000442290.1:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1994A>C
  hgvsp: ENSP00000312222.4:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1994A>C
  hgvsp: ENSP00000415498.3:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1994A>C
  hgvsp: ENSP00000454006.1:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1994A>C
  hgvsp: ENSP00000452965.1:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1495A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1322A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1994A>C
  hgvsp: ENSP00000443783.2:p.Lys665Thr
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys665Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

20-39831566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831566
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831566
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1991G>A
  hgvsp: ENSP00000442290.1:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1319G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1991G>A
  hgvsp: ENSP00000312222.4:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1116G>A
  hgvsp: ENSP00000405421.1:p.Arg373Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1991G>A
  hgvsp: ENSP00000454006.1:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1991G>A
  hgvsp: ENSP00000415498.3:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1991G>A
  hgvsp: ENSP00000443783.2:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1319G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1991G>A
  hgvsp: ENSP00000452965.1:p.Arg664Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1492G>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg664Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

20-39831567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831567
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831567
    reference: chr 20
allele count: 5
allele frequency: 4.11834475487612e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1990C>T
  hgvsp: ENSP00000454006.1:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1990C>T
  hgvsp: ENSP00000442290.1:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1318C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1318C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1115C>T
  hgvsp: ENSP00000405421.1:p.Arg373Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1990C>T
  hgvsp: ENSP00000443783.2:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1990C>T
  hgvsp: ENSP00000312222.4:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1491C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1990C>T
  hgvsp: ENSP00000452965.1:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1990C>T
  hgvsp: ENSP00000415498.3:p.Arg664Trp
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg664Trp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/20-39831581-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831581
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831580
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1975delT
  hgvsp: ENSP00000443783.2:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1476delT
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1303delT
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1100delT
  hgvsp: ENSP00000405421.1:p.Trp368GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1975delT
  hgvsp: ENSP00000415498.3:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1975delT
  hgvsp: ENSP00000312222.4:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1975delT
  hgvsp: ENSP00000454006.1:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1975delT
  hgvsp: ENSP00000442290.1:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1303delT
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1975delT
  hgvsp: ENSP00000452965.1:p.Trp659GlyfsTer9
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp659GlyfsTer9
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CA
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

20-39831596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831596
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831596
    reference: chr 20
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1961G>A
  hgvsp: ENSP00000312222.4:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1961G>A
  hgvsp: ENSP00000452965.1:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1961G>A
  hgvsp: ENSP00000442290.1:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1961G>A
  hgvsp: ENSP00000415498.3:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1462G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1289G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1961G>A
  hgvsp: ENSP00000454006.1:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1961G>A
  hgvsp: ENSP00000443783.2:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1086G>A
  hgvsp: ENSP00000405421.1:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1289G>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg654Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

20-39831602-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831602
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831602
    reference: chr 20
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1955C>T
  hgvsp: ENSP00000454006.1:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1456C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1283C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1955C>T
  hgvsp: ENSP00000443783.2:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1955C>T
  hgvsp: ENSP00000452965.1:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1955C>T
  hgvsp: ENSP00000312222.4:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1955C>T
  hgvsp: ENSP00000415498.3:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1955C>T
  hgvsp: ENSP00000442290.1:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1080C>T
  hgvsp: ENSP00000405421.1:p.Thr361Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1283C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr652Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

20-39831604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831604
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831604
    reference: chr 20
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1953G>A
  hgvsp: ENSP00000452965.1:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1281G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1953G>A
  hgvsp: ENSP00000415498.3:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1078G>A
  hgvsp: ENSP00000405421.1:p.Met360Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1953G>A
  hgvsp: ENSP00000312222.4:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1953G>A
  hgvsp: ENSP00000454006.1:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1953G>A
  hgvsp: ENSP00000443783.2:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1281G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1953G>A
  hgvsp: ENSP00000442290.1:p.Met651Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1454G>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met651Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum

20-39831616-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831616
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831616
    reference: chr 20
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1941T>A
  hgvsp: ENSP00000442290.1:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1269T>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1269T>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1941T>A
  hgvsp: ENSP00000452965.1:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1941T>A
  hgvsp: ENSP00000443783.2:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1941T>A
  hgvsp: ENSP00000415498.3:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1066T>A
  hgvsp: ENSP00000405421.1:p.Ser356Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1941T>A
  hgvsp: ENSP00000312222.4:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1941T>A
  hgvsp: ENSP00000454006.1:p.Ser647Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1442T>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser647Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/20-39831626-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831626
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831626
    reference: chr 20
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1931G>T
  hgvsp: ENSP00000415498.3:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1931G>T
  hgvsp: ENSP00000312222.4:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1931G>T
  hgvsp: ENSP00000442290.1:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1931G>T
  hgvsp: ENSP00000454006.1:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1432G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1056G>T
  hgvsp: ENSP00000405421.1:p.Arg353Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1931G>T
  hgvsp: ENSP00000452965.1:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1259G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1259G>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1931G>T
  hgvsp: ENSP00000443783.2:p.Arg644Leu
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg644Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

20-39831628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831628
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831628
    reference: chr 20
allele count: 15
allele frequency: 1.235605199426679e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1257C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1054C>T
  hgvsp: ENST00000421422.1:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1929C>T
  hgvsp: ENST00000544979.2:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1929C>T
  hgvsp: ENST00000540170.1:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1929C>T
  hgvsp: ENST00000309060.3:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1929C>T
  hgvsp: ENST00000432768.2:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1929C>T
  hgvsp: ENST00000559234.1:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1257C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1929C>T
  hgvsp: ENST00000560361.1:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp643Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

20-39831633-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831633
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831633
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1924C>G
  hgvsp: ENSP00000442290.1:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1924C>G
  hgvsp: ENSP00000443783.2:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1924C>G
  hgvsp: ENSP00000452965.1:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1924C>G
  hgvsp: ENSP00000415498.3:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1924C>G
  hgvsp: ENSP00000454006.1:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1252C>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1049C>G
  hgvsp: ENSP00000405421.1:p.Leu351Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1924C>G
  hgvsp: ENSP00000312222.4:p.Leu642Val
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1425C>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1252C>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu642Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

20-39831659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831659
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831659
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1226A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1898A>G
  hgvsp: ENSP00000312222.4:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1399A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1898A>G
  hgvsp: ENSP00000443783.2:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1898A>G
  hgvsp: ENSP00000415498.3:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1226A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1023A>G
  hgvsp: ENSP00000405421.1:p.Gln342Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1898A>G
  hgvsp: ENSP00000452965.1:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1898A>G
  hgvsp: ENSP00000442290.1:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1898A>G
  hgvsp: ENSP00000454006.1:p.Gln633Arg
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln633Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

20-39831665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831665
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831665
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1892T>C
  hgvsp: ENSP00000312222.4:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1892T>C
  hgvsp: ENSP00000415498.3:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1892T>C
  hgvsp: ENSP00000454006.1:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1220T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1220T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1892T>C
  hgvsp: ENSP00000442290.1:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1017T>C
  hgvsp: ENSP00000405421.1:p.Phe340Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1393T>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1892T>C
  hgvsp: ENSP00000452965.1:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1892T>C
  hgvsp: ENSP00000443783.2:p.Phe631Ser
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe631Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

20-39831670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831670
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831670
    reference: chr 20
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1887C>T
  hgvsp: ENST00000540170.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1215C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1887C>T
  hgvsp: ENST00000560361.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1887C>T
  hgvsp: ENST00000432768.2:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1388C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1887C>T
  hgvsp: ENST00000559234.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1887C>T
  hgvsp: ENST00000309060.3:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1012C>T
  hgvsp: ENST00000421422.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1215C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1887C>T
  hgvsp: ENST00000544979.2:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser629Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS

20-39831671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831671
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831671
    reference: chr 20
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1387G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1886G>A
  hgvsp: ENSP00000443783.2:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1886G>A
  hgvsp: ENSP00000442290.1:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1214G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1886G>A
  hgvsp: ENSP00000312222.4:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1886G>A
  hgvsp: ENSP00000415498.3:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1011G>A
  hgvsp: ENSP00000405421.1:p.Ser338Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1886G>A
  hgvsp: ENSP00000454006.1:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1886G>A
  hgvsp: ENSP00000452965.1:p.Ser629Asn
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1214G>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser629Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

20-39831679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831679
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831679
    reference: chr 20
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1878C>T
  hgvsp: ENST00000540170.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1003C>T
  hgvsp: ENST00000421422.1:c.1003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1206C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1878C>T
  hgvsp: ENST00000560361.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1878C>T
  hgvsp: ENST00000309060.3:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1878C>T
  hgvsp: ENST00000544979.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1379C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1878C>T
  hgvsp: ENST00000559234.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1878C>T
  hgvsp: ENST00000432768.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1206C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala626Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

20-39831682-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831682
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831682
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1875A>T
  hgvsp: ENSP00000443783.2:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1875A>T
  hgvsp: ENSP00000415498.3:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1875A>T
  hgvsp: ENSP00000454006.1:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1203A>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1875A>T
  hgvsp: ENSP00000312222.4:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1203A>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.1000A>T
  hgvsp: ENSP00000405421.1:p.Arg334Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1376A>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1875A>T
  hgvsp: ENSP00000442290.1:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1875A>T
  hgvsp: ENSP00000452965.1:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44451
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg625Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

20-39831683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831683
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831683
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1874G>A
  hgvsp: ENSP00000312222.4:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1874G>A
  hgvsp: ENSP00000452965.1:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1375G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1874G>A
  hgvsp: ENSP00000454006.1:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1202G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1874G>A
  hgvsp: ENSP00000415498.3:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1202G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1874G>A
  hgvsp: ENSP00000442290.1:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.999G>A
  hgvsp: ENSP00000405421.1:p.Arg334Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1874G>A
  hgvsp: ENSP00000443783.2:p.Arg625Lys
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg625Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

20-39831691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831691
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831691
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1866G>A
  hgvsp: ENST00000309060.3:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1866G>A
  hgvsp: ENST00000540170.1:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.991G>A
  hgvsp: ENST00000421422.1:c.991G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1194G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1367G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1866G>A
  hgvsp: ENST00000559234.1:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1866G>A
  hgvsp: ENST00000560361.1:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1866G>A
  hgvsp: ENST00000432768.2:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1194G>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1866G>A
  hgvsp: ENST00000544979.2:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu622Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

20-39831700-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831700
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831700
    reference: chr 20
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1857A>G
  hgvsp: ENST00000559234.1:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1857A>G
  hgvsp: ENST00000544979.2:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1857A>G
  hgvsp: ENST00000432768.2:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1857A>G
  hgvsp: ENST00000309060.3:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1358A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1185A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1185A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1857A>G
  hgvsp: ENST00000540170.1:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.982A>G
  hgvsp: ENST00000421422.1:c.982A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1857A>G
  hgvsp: ENST00000560361.1:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg619Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

20-39831700-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831700
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831700
    reference: chr 20
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1185A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1857A>C
  hgvsp: ENSP00000443783.2:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1358A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1857A>C
  hgvsp: ENSP00000415498.3:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1857A>C
  hgvsp: ENSP00000442290.1:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.982A>C
  hgvsp: ENSP00000405421.1:p.Arg328Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1857A>C
  hgvsp: ENSP00000312222.4:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1185A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1857A>C
  hgvsp: ENSP00000452965.1:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1857A>C
  hgvsp: ENSP00000454006.1:p.Arg619Ser
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg619Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD

20-39831732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831732
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831732
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1825C>T
  hgvsp: ENSP00000454006.1:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1326C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1153C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1825C>T
  hgvsp: ENSP00000442290.1:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1825C>T
  hgvsp: ENSP00000443783.2:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.950C>T
  hgvsp: ENSP00000405421.1:p.Pro318Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1153C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1825C>T
  hgvsp: ENSP00000312222.4:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1825C>T
  hgvsp: ENSP00000415498.3:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1825C>T
  hgvsp: ENSP00000452965.1:p.Pro609Ser
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro609Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

20-39831732-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831732
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831732
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1825C>A
  hgvsp: ENSP00000443783.2:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1825C>A
  hgvsp: ENSP00000452965.1:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1825C>A
  hgvsp: ENSP00000442290.1:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1153C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1825C>A
  hgvsp: ENSP00000415498.3:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1825C>A
  hgvsp: ENSP00000454006.1:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1326C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.950C>A
  hgvsp: ENSP00000405421.1:p.Pro318Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1825C>A
  hgvsp: ENSP00000312222.4:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1153C>A
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro609Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

20-39831734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831734
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831734
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.948C>T
  hgvsp: ENSP00000405421.1:p.Thr317Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1823C>T
  hgvsp: ENSP00000443783.2:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1823C>T
  hgvsp: ENSP00000415498.3:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1823C>T
  hgvsp: ENSP00000442290.1:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1823C>T
  hgvsp: ENSP00000454006.1:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1151C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1823C>T
  hgvsp: ENSP00000312222.4:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1823C>T
  hgvsp: ENSP00000452965.1:p.Thr608Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1324C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1151C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr608Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

20-39831735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831735
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831735
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1822A>G
  hgvsp: ENSP00000415498.3:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1150A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1822A>G
  hgvsp: ENSP00000443783.2:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.947A>G
  hgvsp: ENSP00000405421.1:p.Thr317Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1822A>G
  hgvsp: ENSP00000442290.1:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1822A>G
  hgvsp: ENSP00000312222.4:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1822A>G
  hgvsp: ENSP00000452965.1:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1822A>G
  hgvsp: ENSP00000454006.1:p.Thr608Ala
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1150A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1323A>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr608Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

20-39831737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831737
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831737
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1820A>C
  hgvsp: ENSP00000454006.1:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1820A>C
  hgvsp: ENSP00000312222.4:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1820A>C
  hgvsp: ENSP00000415498.3:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1321A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1820A>C
  hgvsp: ENSP00000452965.1:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1148A>C
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1820A>C
  hgvsp: ENSP00000442290.1:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1820A>C
  hgvsp: ENSP00000443783.2:p.Gln607Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.945A>C
  hgvsp: ENSP00000405421.1:p.Gln316Pro
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1148A>C
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln607Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

20-39831738-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831738
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831738
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1819C>A
  hgvsp: ENSP00000443783.2:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.944C>A
  hgvsp: ENSP00000405421.1:p.Gln316Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1147C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1320C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1819C>A
  hgvsp: ENSP00000454006.1:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1819C>A
  hgvsp: ENSP00000312222.4:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1819C>A
  hgvsp: ENSP00000415498.3:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1819C>A
  hgvsp: ENSP00000442290.1:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1147C>A
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1819C>A
  hgvsp: ENSP00000452965.1:p.Gln607Lys
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln607Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

20-39831741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831741
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831741
    reference: chr 20
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1816C>T
  hgvsp: ENSP00000454006.1:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1816C>T
  hgvsp: ENSP00000443783.2:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1816C>T
  hgvsp: ENSP00000312222.4:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1317C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1144C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1816C>T
  hgvsp: ENSP00000452965.1:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1816C>T
  hgvsp: ENSP00000442290.1:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1816C>T
  hgvsp: ENSP00000415498.3:p.His606Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.941C>T
  hgvsp: ENSP00000405421.1:p.His315Tyr
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1144C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His606Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/20-39831745-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831745
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831745
    reference: chr 20
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1812T>G
  hgvsp: ENST00000540170.1:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.937T>G
  hgvsp: ENST00000421422.1:c.937T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1812T>G
  hgvsp: ENST00000309060.3:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1140T>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1313T>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1812T>G
  hgvsp: ENST00000559234.1:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1812T>G
  hgvsp: ENST00000432768.2:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1812T>G
  hgvsp: ENST00000544979.2:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1812T>G
  hgvsp: ENST00000560361.1:c.1812T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1140T>G
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser604Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

20-39831753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831753
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831753
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1132C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1132C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.929C>T
  hgvsp: ENSP00000405421.1:p.Arg311Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1804C>T
  hgvsp: ENSP00000454006.1:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1804C>T
  hgvsp: ENSP00000443783.2:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1804C>T
  hgvsp: ENSP00000442290.1:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1804C>T
  hgvsp: ENSP00000452965.1:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1305C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1804C>T
  hgvsp: ENSP00000312222.4:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1804C>T
  hgvsp: ENSP00000415498.3:p.Arg602Ter
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg602Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

20-39831755-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831755
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831755
    reference: chr 20
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1802A>G
  hgvsp: ENSP00000415498.3:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.927A>G
  hgvsp: ENSP00000405421.1:p.Lys310Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1802A>G
  hgvsp: ENSP00000443783.2:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1802A>G
  hgvsp: ENSP00000454006.1:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1130A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1802A>G
  hgvsp: ENSP00000442290.1:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1303A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1130A>G
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1802A>G
  hgvsp: ENSP00000312222.4:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1802A>G
  hgvsp: ENSP00000452965.1:p.Lys601Arg
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys601Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

20-39831766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831766
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831766
    reference: chr 20
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1292C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1791C>T
  hgvsp: ENST00000309060.3:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1791C>T
  hgvsp: ENST00000540170.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1119C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1791C>T
  hgvsp: ENST00000559234.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1791C>T
  hgvsp: ENST00000432768.2:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1791C>T
  hgvsp: ENST00000544979.2:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1791C>T
  hgvsp: ENST00000560361.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1119C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.916C>T
  hgvsp: ENST00000421422.1:c.916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44435
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His597His
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

20-39831779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39831779
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 39831779
    reference: chr 20
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454006
  ensembl transcript: ENST00000560361
  gene symbol: ZHX3
  hgvsc: ENST00000560361.1:c.1778C>T
  hgvsp: ENSP00000454006.1:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000405421
  ensembl transcript: ENST00000421422
  gene symbol: ZHX3
  hgvsc: ENST00000421422.1:c.903C>T
  hgvsp: ENSP00000405421.1:p.Thr302Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000454208
  ensembl transcript: ENST00000558993
  gene symbol: ZHX3
  hgvsc: ENST00000558993.1:c.672+1106C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000312222
  ensembl transcript: ENST00000309060
  gene symbol: ZHX3
  hgvsc: ENST00000309060.3:c.1778C>T
  hgvsp: ENSP00000312222.4:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000443783
  ensembl transcript: ENST00000544979
  gene symbol: ZHX3
  hgvsc: ENST00000544979.2:c.1778C>T
  hgvsp: ENSP00000443783.2:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000442290
  ensembl transcript: ENST00000540170
  gene symbol: ZHX3
  hgvsc: ENST00000540170.1:c.1778C>T
  hgvsp: ENSP00000442290.1:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453548
  ensembl transcript: ENST00000557816
  gene symbol: ZHX3
  hgvsc: ENST00000557816.1:c.672+1106C>T
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000452965
  ensembl transcript: ENST00000559234
  gene symbol: ZHX3
  hgvsc: ENST00000559234.1:c.1778C>T
  hgvsp: ENSP00000452965.1:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000415498
  ensembl transcript: ENST00000432768
  gene symbol: ZHX3
  hgvsc: ENST00000432768.2:c.1778C>T
  hgvsp: ENSP00000415498.3:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/15935
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174306
  ensembl protein: ENSP00000453647
  ensembl transcript: ENST00000560364
  gene symbol: ZHX3
  hgvsc: ENST00000560364.1:c.*1279C>T
  variant of: http://identifiers.org/hgnc/15935
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr593Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1858
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.88e1

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.408e-1

FS
type: SiteQuality
SIO_000300: 6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

QD
type: SiteQuality
SIO_000300: 1.227e1

ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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African
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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East Asian
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Other
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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Other
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European (Finnish)
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East Asian
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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African
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East Asian
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South Asian
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allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 1.998e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 1.50581e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45620
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6460
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variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
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GenotypeQuality
all individuals: 44
bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.229e0

DP
type: SiteQuality
SIO_000300: 1.50639e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 2.452e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2065
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GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.341e1

FS
type: SiteQuality
SIO_000300: 1.101e0

DP
type: SiteQuality
SIO_000300: 1.506939e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 578
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 2063
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GenotypeQuality
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GenotypeQuality
all individuals: 1901
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variant carriers: 27

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2038
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variant carriers: 0

GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.297362110311751e-4
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.508586e6

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 1879
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variant carriers: 1

GenotypeQuality
all individuals: 6439
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 45507
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 1230
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
all individuals: 2056
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variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
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GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 4.475e0

VQSLOD
type: SiteQuality
SIO_000300: -4.322e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.181e0

DP
type: SiteQuality
SIO_000300: 1.507429e6

QD
type: SiteQuality
SIO_000300: 1.68e1

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 104
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variant carriers: 1

GenotypeQuality
all individuals: 2522
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variant carriers: 2

GenotypeQuality
all individuals: 76
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variant carriers: 6

GenotypeQuality
all individuals: 406
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variant carriers: 3

GenotypeQuality
all individuals: 118
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GenotypeQuality
all individuals: 1751
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variant carriers: 6

GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 5815
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GenotypeQuality
all individuals: 2630
bin: 9.75e1
variant carriers: 1523

GenotypeQuality
all individuals: 77
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variant carriers: 2

GenotypeQuality
all individuals: 105
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variant carriers: 5

GenotypeQuality
all individuals: 43634
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 435
bin: 8.75e1
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GenotypeQuality
all individuals: 1650
bin: 7.75e1
variant carriers: 6

African
type: Population
allele count: 216
allele frequency: 2.303262955854127e-2
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 4.235294117647058e-3
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031772980839195e-4
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 310
allele frequency: 5.300957592339262e-2
allele num: 5848
num of homozygotes: 0

Other
type: Population
allele count: 23
allele frequency: 2.764423076923077e-2
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.102680918170668e-3
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 977
allele frequency: 1.537565704573353e-2
allele num: 63542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.761769e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.54e0

QD
type: SiteQuality
SIO_000300: 4.18e0

MQ
type: SiteQuality
SIO_000300: 5.803e1

VQSLOD
type: SiteQuality
SIO_000300: -3.136e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

FS
type: SiteQuality
SIO_000300: 2.5566e2

MQRankSum
type: SiteQuality
SIO_000300: -6.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.056e0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 498
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variant carriers: 1

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 68
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variant carriers: 3

GenotypeQuality
all individuals: 1865
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variant carriers: 1

GenotypeQuality
all individuals: 67
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variant carriers: 2

GenotypeQuality
all individuals: 6014
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 1308

GenotypeQuality
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GenotypeQuality
all individuals: 1046
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variant carriers: 1

GenotypeQuality
all individuals: 106
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variant carriers: 3

GenotypeQuality
all individuals: 81
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variant carriers: 3

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 3

East Asian
type: Population
allele count: 27
allele frequency: 3.122109158186864e-3
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 171
allele frequency: 1.649305555555556e-2
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 2.439024390243903e-2
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.555747623163354e-3
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 271
allele frequency: 4.139932783379163e-2
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 829
allele frequency: 1.244782125589357e-2
allele num: 66598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.605e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 2.02329e2

MQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

MQ
type: SiteQuality
SIO_000300: 5.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 4.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.635e0

VQSLOD
type: SiteQuality
SIO_000300: -4.374e1

DP
type: SiteQuality
SIO_000300: 1.699743e6

GenotypeQuality
all individuals: 6114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
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GenotypeQuality
all individuals: 537
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
all individuals: 1888
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4212
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GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.676623e6

FS
type: SiteQuality
SIO_000300: 6.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1079
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 1888
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 536
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 6138
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 4218
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66722
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 6.4e-3

ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.678373e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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DP
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QD
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InbreedingCoeff
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SIO_000300: 5.4e-3

MQRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
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South Asian
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allele num: 16508
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: -6.1e-1

MQRankSum
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.348597458643011e-4
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 1.2e0

ClippingRankSum
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SIO_000300: -4.4e-1

BaseQRankSum
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QD
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.68042e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 5.6e-3

DP
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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European (Finnish)
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allele count: 0
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allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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East Asian
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 125

European (Finnish)
type: Population
allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 2.422480620155039e-4
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African
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allele count: 113
allele frequency: 1.085911973861234e-2
allele num: 10406
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European (Non-Finnish)
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allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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allele num: 66738
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East Asian
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DP
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.348516631705124e-4
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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Other
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 66740
num of homozygotes: 0

African
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South Asian
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East Asian
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Latino
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Other
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European (Finnish)
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Other
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African
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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QD
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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VQSLOD
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DP
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Latino
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Other
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East Asian
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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African
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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QD
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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QD
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VQSLOD
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DP
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ReadPosRankSum
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SIO_000300: -9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.378e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.568e0

FS
type: SiteQuality
SIO_000300: 2.129e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
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SIO_000300: 1.36e-1

DP
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SIO_000300: 1.682363e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

FS
type: SiteQuality
SIO_000300: 6.421e0

QD
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SIO_000300: 1.347e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
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SIO_000300: -5.715e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.682489e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

DP
type: SiteQuality
SIO_000300: 1.682143e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.581e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 1.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.507e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.682225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.96e-1

ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 9.085402786190188e-4
allele num: 16510
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: 8.3e-2

ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.683024e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQRankSum
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SIO_000300: -1.682e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.469e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.025e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: -1.543e0

VQSLOD
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SIO_000300: -1.516e0

QD
type: SiteQuality
SIO_000300: 1.001e1

DP
type: SiteQuality
SIO_000300: 1.682955e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.445e0

DP
type: SiteQuality
SIO_000300: 1.683391e6

InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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SIO_000300: 1.169e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

FS
type: SiteQuality
SIO_000300: 1.947e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.683018e6

BaseQRankSum
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SIO_000300: -2.243e0

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.526e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 2.865e0

DP
type: SiteQuality
SIO_000300: 1.683212e6

ClippingRankSum
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SIO_000300: -2.3e-2

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: -2.228e0

VQSLOD
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SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.458e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -8.695e0

ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.962e1

DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6137
bin: 6.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
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SIO_000300: -2.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

DP
type: SiteQuality
SIO_000300: 1.683569e6

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 2.0e-4

MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 2.0e-4

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -9.429999999999999e-1

MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.683521e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.079e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

FS
type: SiteQuality
SIO_000300: 8.401e0

BaseQRankSum
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SIO_000300: 1.24e-1

MQ
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SIO_000300: 5.877e1

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.683581e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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South Asian
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Other
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BaseQRankSum
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DP
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QD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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QD
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BaseQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.683482e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.936e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.166e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.683439e6

VQSLOD
type: SiteQuality
SIO_000300: -1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

FS
type: SiteQuality
SIO_000300: 6.661e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 1.683472e6

QD
type: SiteQuality
SIO_000300: 1.378e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1070
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

DP
type: SiteQuality
SIO_000300: 1.683537e6

QD
type: SiteQuality
SIO_000300: 1.465e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 1.268e0

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 5.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 1.683398e6

QD
type: SiteQuality
SIO_000300: 1.473e1